Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4952 and Psyr_4953 are separated by 69 nucleotides Psyr_4953 and Psyr_4954 are separated by 14 nucleotides Psyr_4954 and Psyr_4955 are separated by 27 nucleotides Psyr_4955 and Psyr_4956 overlap by 1 nucleotides
Psyr_4952: Psyr_4952 - hypothetical protein, at 5,870,498 to 5,871,247
_4952
Psyr_4953: Psyr_4953 - Uncharacterized conserved protein UCP028301, at 5,871,317 to 5,871,850
_4953
Psyr_4954: Psyr_4954 - Protein of unknown function DUF877, at 5,871,865 to 5,873,367
_4954
Psyr_4955: Psyr_4955 - Protein of unknown function DUF1316, at 5,873,395 to 5,873,877
_4955
Psyr_4956: Psyr_4956 - protein of unknown function DUF879, at 5,873,877 to 5,875,709
_4956
Position (kb) 5871
5872
5873
5874 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5870.951 kb on + strand, within Psyr_4952 at 5870.951 kb on + strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.952 kb on - strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.955 kb on + strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.956 kb on - strand, within Psyr_4952 at 5870.963 kb on + strand, within Psyr_4952 at 5870.963 kb on + strand, within Psyr_4952 at 5870.963 kb on + strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.964 kb on - strand, within Psyr_4952 at 5870.978 kb on + strand, within Psyr_4952 at 5870.978 kb on + strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5870.979 kb on - strand, within Psyr_4952 at 5871.155 kb on - strand, within Psyr_4952 at 5871.245 kb on + strand at 5871.335 kb on - strand at 5871.335 kb on - strand at 5871.376 kb on + strand, within Psyr_4953 at 5871.383 kb on + strand, within Psyr_4953 at 5871.383 kb on + strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.384 kb on - strand, within Psyr_4953 at 5871.436 kb on - strand, within Psyr_4953 at 5871.436 kb on - strand, within Psyr_4953 at 5871.436 kb on - strand, within Psyr_4953 at 5871.848 kb on + strand at 5871.848 kb on + strand at 5871.873 kb on + strand at 5872.034 kb on + strand, within Psyr_4954 at 5872.034 kb on + strand, within Psyr_4954 at 5872.035 kb on - strand, within Psyr_4954 at 5872.035 kb on - strand, within Psyr_4954 at 5872.035 kb on - strand, within Psyr_4954 at 5872.187 kb on - strand, within Psyr_4954 at 5872.187 kb on - strand, within Psyr_4954 at 5872.315 kb on + strand, within Psyr_4954 at 5872.315 kb on + strand, within Psyr_4954 at 5872.316 kb on - strand, within Psyr_4954 at 5872.316 kb on - strand, within Psyr_4954 at 5872.328 kb on - strand, within Psyr_4954 at 5872.373 kb on - strand, within Psyr_4954 at 5872.373 kb on - strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.402 kb on + strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.403 kb on - strand, within Psyr_4954 at 5872.546 kb on + strand, within Psyr_4954 at 5872.547 kb on - strand, within Psyr_4954 at 5872.702 kb on + strand, within Psyr_4954 at 5872.702 kb on + strand, within Psyr_4954 at 5872.702 kb on + strand, within Psyr_4954 at 5872.703 kb on - strand, within Psyr_4954 at 5872.703 kb on - strand, within Psyr_4954 at 5872.703 kb on - strand, within Psyr_4954 at 5872.724 kb on - strand, within Psyr_4954 at 5872.827 kb on + strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.828 kb on - strand, within Psyr_4954 at 5872.955 kb on - strand, within Psyr_4954 at 5872.999 kb on + strand, within Psyr_4954 at 5872.999 kb on + strand, within Psyr_4954 at 5872.999 kb on + strand, within Psyr_4954 at 5872.999 kb on + strand, within Psyr_4954 at 5872.999 kb on + strand, within Psyr_4954 at 5873.000 kb on - strand, within Psyr_4954 at 5873.000 kb on - strand, within Psyr_4954 at 5873.000 kb on - strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.050 kb on + strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.051 kb on - strand, within Psyr_4954 at 5873.070 kb on + strand, within Psyr_4954 at 5873.080 kb on + strand, within Psyr_4954 at 5873.080 kb on + strand, within Psyr_4954 at 5873.080 kb on + strand, within Psyr_4954 at 5873.080 kb on + strand, within Psyr_4954 at 5873.081 kb on - strand, within Psyr_4954 at 5873.081 kb on - strand, within Psyr_4954 at 5873.081 kb on - strand, within Psyr_4954 at 5873.167 kb on + strand, within Psyr_4954 at 5873.167 kb on + strand, within Psyr_4954 at 5873.167 kb on + strand, within Psyr_4954 at 5873.167 kb on + strand, within Psyr_4954 at 5873.167 kb on + strand, within Psyr_4954 at 5873.167 kb on + strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.168 kb on - strand, within Psyr_4954 at 5873.269 kb on + strand at 5873.270 kb on - strand at 5873.284 kb on + strand at 5873.284 kb on + strand at 5873.284 kb on + strand at 5873.285 kb on - strand at 5873.285 kb on - strand at 5873.285 kb on - strand at 5873.285 kb on - strand at 5873.299 kb on + strand at 5873.299 kb on + strand at 5873.379 kb on + strand at 5873.380 kb on - strand at 5873.400 kb on + strand at 5873.400 kb on + strand at 5873.400 kb on + strand at 5873.401 kb on - strand at 5873.401 kb on - strand at 5873.401 kb on - strand at 5873.503 kb on + strand, within Psyr_4955 at 5873.503 kb on + strand, within Psyr_4955 at 5873.503 kb on + strand, within Psyr_4955 at 5873.504 kb on - strand, within Psyr_4955 at 5873.504 kb on - strand at 5873.611 kb on + strand, within Psyr_4955 at 5873.634 kb on + strand, within Psyr_4955 at 5873.786 kb on + strand, within Psyr_4955 at 5873.854 kb on + strand at 5873.854 kb on + strand at 5873.855 kb on - strand at 5873.855 kb on - strand at 5873.855 kb on - strand at 5873.898 kb on + strand at 5873.899 kb on - strand at 5873.899 kb on - strand at 5873.901 kb on + strand at 5873.901 kb on + strand at 5874.123 kb on + strand, within Psyr_4956 at 5874.123 kb on + strand, within Psyr_4956 at 5874.123 kb on + strand, within Psyr_4956 at 5874.123 kb on + strand, within Psyr_4956 at 5874.123 kb on + strand, within Psyr_4956 at 5874.123 kb on + strand, within Psyr_4956 at 5874.123 kb on + strand, within Psyr_4956 at 5874.124 kb on - strand, within Psyr_4956 at 5874.124 kb on - strand, within Psyr_4956 at 5874.124 kb on - strand, within Psyr_4956 at 5874.280 kb on + strand, within Psyr_4956 at 5874.280 kb on + strand, within Psyr_4956
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,870,951 + Psyr_4952 0.60 +0.1 5,870,951 + Psyr_4952 0.60 -0.4 5,870,952 - Psyr_4952 0.61 -1.4 5,870,952 - Psyr_4952 0.61 +0.0 5,870,952 - Psyr_4952 0.61 +0.0 5,870,952 - Psyr_4952 0.61 +1.3 5,870,952 - Psyr_4952 0.61 -0.2 5,870,952 - Psyr_4952 0.61 +0.3 5,870,955 + Psyr_4952 0.61 -0.2 5,870,955 + Psyr_4952 0.61 -0.1 5,870,955 + Psyr_4952 0.61 -0.4 5,870,955 + Psyr_4952 0.61 +0.9 5,870,955 + Psyr_4952 0.61 -0.2 5,870,955 + Psyr_4952 0.61 -1.1 5,870,955 + Psyr_4952 0.61 -0.8 5,870,956 - Psyr_4952 0.61 +0.5 5,870,956 - Psyr_4952 0.61 -0.3 5,870,956 - Psyr_4952 0.61 +1.0 5,870,956 - Psyr_4952 0.61 +1.3 5,870,956 - Psyr_4952 0.61 -0.3 5,870,956 - Psyr_4952 0.61 +1.1 5,870,956 - Psyr_4952 0.61 +1.0 5,870,956 - Psyr_4952 0.61 +0.1 5,870,956 - Psyr_4952 0.61 +0.5 5,870,963 + Psyr_4952 0.62 -1.1 5,870,963 + Psyr_4952 0.62 -0.9 5,870,963 + Psyr_4952 0.62 +1.0 5,870,964 - Psyr_4952 0.62 +0.2 5,870,964 - Psyr_4952 0.62 +1.1 5,870,964 - Psyr_4952 0.62 +0.3 5,870,964 - Psyr_4952 0.62 -0.5 5,870,964 - Psyr_4952 0.62 +0.8 5,870,978 + Psyr_4952 0.64 +0.5 5,870,978 + Psyr_4952 0.64 +1.3 5,870,979 - Psyr_4952 0.64 +0.2 5,870,979 - Psyr_4952 0.64 -1.5 5,870,979 - Psyr_4952 0.64 -0.8 5,870,979 - Psyr_4952 0.64 +1.0 5,870,979 - Psyr_4952 0.64 +0.1 5,871,155 - Psyr_4952 0.88 +2.1 5,871,245 + +0.4 5,871,335 - -0.1 5,871,335 - +0.1 5,871,376 + Psyr_4953 0.11 +1.6 5,871,383 + Psyr_4953 0.12 +1.4 5,871,383 + Psyr_4953 0.12 +0.3 5,871,384 - Psyr_4953 0.13 +0.3 5,871,384 - Psyr_4953 0.13 +1.6 5,871,384 - Psyr_4953 0.13 +0.6 5,871,384 - Psyr_4953 0.13 +2.3 5,871,384 - Psyr_4953 0.13 +0.0 5,871,384 - Psyr_4953 0.13 -1.8 5,871,436 - Psyr_4953 0.22 -1.4 5,871,436 - Psyr_4953 0.22 +0.8 5,871,436 - Psyr_4953 0.22 -4.0 5,871,848 + +0.3 5,871,848 + +0.7 5,871,873 + +1.3 5,872,034 + Psyr_4954 0.11 -0.1 5,872,034 + Psyr_4954 0.11 -1.5 5,872,035 - Psyr_4954 0.11 +0.8 5,872,035 - Psyr_4954 0.11 -0.8 5,872,035 - Psyr_4954 0.11 +0.6 5,872,187 - Psyr_4954 0.21 +0.0 5,872,187 - Psyr_4954 0.21 +1.1 5,872,315 + Psyr_4954 0.30 -0.3 5,872,315 + Psyr_4954 0.30 -0.3 5,872,316 - Psyr_4954 0.30 -1.5 5,872,316 - Psyr_4954 0.30 +0.8 5,872,328 - Psyr_4954 0.31 +0.3 5,872,373 - Psyr_4954 0.34 -0.2 5,872,373 - Psyr_4954 0.34 +0.4 5,872,402 + Psyr_4954 0.36 -1.7 5,872,402 + Psyr_4954 0.36 +0.9 5,872,402 + Psyr_4954 0.36 +0.8 5,872,402 + Psyr_4954 0.36 -0.7 5,872,402 + Psyr_4954 0.36 +1.7 5,872,402 + Psyr_4954 0.36 +1.0 5,872,402 + Psyr_4954 0.36 +2.9 5,872,402 + Psyr_4954 0.36 +0.9 5,872,403 - Psyr_4954 0.36 -0.4 5,872,403 - Psyr_4954 0.36 +1.1 5,872,403 - Psyr_4954 0.36 +0.4 5,872,403 - Psyr_4954 0.36 -2.3 5,872,403 - Psyr_4954 0.36 +1.6 5,872,403 - Psyr_4954 0.36 +1.4 5,872,403 - Psyr_4954 0.36 +1.1 5,872,403 - Psyr_4954 0.36 -0.6 5,872,403 - Psyr_4954 0.36 -0.6 5,872,403 - Psyr_4954 0.36 +0.4 5,872,403 - Psyr_4954 0.36 +0.4 5,872,403 - Psyr_4954 0.36 +0.4 5,872,403 - Psyr_4954 0.36 +1.2 5,872,403 - Psyr_4954 0.36 +0.9 5,872,403 - Psyr_4954 0.36 +0.2 5,872,546 + Psyr_4954 0.45 +0.5 5,872,547 - Psyr_4954 0.45 +1.4 5,872,702 + Psyr_4954 0.56 +1.3 5,872,702 + Psyr_4954 0.56 +2.7 5,872,702 + Psyr_4954 0.56 +0.6 5,872,703 - Psyr_4954 0.56 +1.4 5,872,703 - Psyr_4954 0.56 -0.7 5,872,703 - Psyr_4954 0.56 +0.5 5,872,724 - Psyr_4954 0.57 +0.2 5,872,827 + Psyr_4954 0.64 +0.6 5,872,828 - Psyr_4954 0.64 +0.0 5,872,828 - Psyr_4954 0.64 +0.0 5,872,828 - Psyr_4954 0.64 +1.5 5,872,828 - Psyr_4954 0.64 +0.0 5,872,828 - Psyr_4954 0.64 -0.1 5,872,828 - Psyr_4954 0.64 +0.1 5,872,955 - Psyr_4954 0.73 -0.1 5,872,999 + Psyr_4954 0.75 +1.2 5,872,999 + Psyr_4954 0.75 +0.2 5,872,999 + Psyr_4954 0.75 -0.4 5,872,999 + Psyr_4954 0.75 +1.1 5,872,999 + Psyr_4954 0.75 +2.0 5,873,000 - Psyr_4954 0.76 -0.4 5,873,000 - Psyr_4954 0.76 -0.4 5,873,000 - Psyr_4954 0.76 -0.2 5,873,050 + Psyr_4954 0.79 -0.6 5,873,050 + Psyr_4954 0.79 -1.3 5,873,050 + Psyr_4954 0.79 +0.3 5,873,050 + Psyr_4954 0.79 +1.0 5,873,050 + Psyr_4954 0.79 +0.8 5,873,050 + Psyr_4954 0.79 +1.6 5,873,050 + Psyr_4954 0.79 +1.7 5,873,050 + Psyr_4954 0.79 -2.3 5,873,050 + Psyr_4954 0.79 +0.2 5,873,051 - Psyr_4954 0.79 +2.5 5,873,051 - Psyr_4954 0.79 -0.7 5,873,051 - Psyr_4954 0.79 +0.8 5,873,051 - Psyr_4954 0.79 -0.5 5,873,051 - Psyr_4954 0.79 -0.6 5,873,051 - Psyr_4954 0.79 -0.1 5,873,051 - Psyr_4954 0.79 +2.2 5,873,051 - Psyr_4954 0.79 -1.6 5,873,051 - Psyr_4954 0.79 +0.3 5,873,051 - Psyr_4954 0.79 +0.7 5,873,051 - Psyr_4954 0.79 +0.2 5,873,051 - Psyr_4954 0.79 -0.5 5,873,051 - Psyr_4954 0.79 -1.1 5,873,051 - Psyr_4954 0.79 -1.0 5,873,051 - Psyr_4954 0.79 +1.2 5,873,051 - Psyr_4954 0.79 +0.4 5,873,051 - Psyr_4954 0.79 +0.6 5,873,051 - Psyr_4954 0.79 -0.8 5,873,051 - Psyr_4954 0.79 +0.6 5,873,051 - Psyr_4954 0.79 +0.4 5,873,051 - Psyr_4954 0.79 +0.6 5,873,070 + Psyr_4954 0.80 -1.1 5,873,080 + Psyr_4954 0.81 -0.5 5,873,080 + Psyr_4954 0.81 -1.2 5,873,080 + Psyr_4954 0.81 -1.7 5,873,080 + Psyr_4954 0.81 -2.6 5,873,081 - Psyr_4954 0.81 -1.3 5,873,081 - Psyr_4954 0.81 +1.0 5,873,081 - Psyr_4954 0.81 +1.0 5,873,167 + Psyr_4954 0.87 -0.0 5,873,167 + Psyr_4954 0.87 -0.8 5,873,167 + Psyr_4954 0.87 +1.6 5,873,167 + Psyr_4954 0.87 -1.2 5,873,167 + Psyr_4954 0.87 -1.4 5,873,167 + Psyr_4954 0.87 -0.6 5,873,168 - Psyr_4954 0.87 -0.6 5,873,168 - Psyr_4954 0.87 -1.7 5,873,168 - Psyr_4954 0.87 +0.1 5,873,168 - Psyr_4954 0.87 -0.5 5,873,168 - Psyr_4954 0.87 -0.1 5,873,168 - Psyr_4954 0.87 -0.2 5,873,168 - Psyr_4954 0.87 +1.2 5,873,269 + +0.3 5,873,270 - -0.7 5,873,284 + +1.3 5,873,284 + -1.9 5,873,284 + +0.4 5,873,285 - +0.6 5,873,285 - +1.3 5,873,285 - -1.2 5,873,285 - -1.1 5,873,299 + +0.6 5,873,299 + -3.8 5,873,379 + +0.6 5,873,380 - +0.5 5,873,400 + -0.2 5,873,400 + +1.3 5,873,400 + -0.2 5,873,401 - -0.7 5,873,401 - +0.7 5,873,401 - +0.4 5,873,503 + Psyr_4955 0.22 +1.4 5,873,503 + Psyr_4955 0.22 +0.5 5,873,503 + Psyr_4955 0.22 -1.1 5,873,504 - Psyr_4955 0.23 -0.1 5,873,504 - +1.0 5,873,611 + Psyr_4955 0.45 -0.4 5,873,634 + Psyr_4955 0.49 +0.1 5,873,786 + Psyr_4955 0.81 -2.3 5,873,854 + +0.8 5,873,854 + +0.8 5,873,855 - -0.7 5,873,855 - +0.3 5,873,855 - -0.6 5,873,898 + -1.6 5,873,899 - -0.7 5,873,899 - -2.7 5,873,901 + +2.2 5,873,901 + -2.0 5,874,123 + Psyr_4956 0.13 +0.9 5,874,123 + Psyr_4956 0.13 -0.1 5,874,123 + Psyr_4956 0.13 -1.3 5,874,123 + Psyr_4956 0.13 -0.2 5,874,123 + Psyr_4956 0.13 +0.6 5,874,123 + Psyr_4956 0.13 -0.9 5,874,123 + Psyr_4956 0.13 -0.4 5,874,124 - Psyr_4956 0.13 +2.2 5,874,124 - Psyr_4956 0.13 +0.6 5,874,124 - Psyr_4956 0.13 +1.2 5,874,280 + Psyr_4956 0.22 +1.2 5,874,280 + Psyr_4956 0.22 -0.8
Or see this region's nucleotide sequence