Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4937

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4935 and Psyr_4936 are separated by 80 nucleotidesPsyr_4936 and Psyr_4937 are separated by 164 nucleotidesPsyr_4937 and Psyr_4938 overlap by 4 nucleotides Psyr_4935: Psyr_4935 - dTDP-glucose 4,6-dehydratase, at 5,850,272 to 5,851,354 _4935 Psyr_4936: Psyr_4936 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 5,851,435 to 5,851,980 _4936 Psyr_4937: Psyr_4937 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,852,145 to 5,853,959 _4937 Psyr_4938: Psyr_4938 - Helix-turn-helix, Fis-type, at 5,853,956 to 5,855,347 _4938 Position (kb) 5852 5853 5854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5851.169 kb on + strand, within Psyr_4935at 5851.259 kb on + strandat 5851.305 kb on - strandat 5851.336 kb on + strandat 5851.410 kb on + strandat 5851.410 kb on + strandat 5851.410 kb on + strandat 5851.411 kb on - strandat 5851.411 kb on - strandat 5852.042 kb on - strandat 5852.042 kb on - strandat 5852.044 kb on + strandat 5852.044 kb on + strandat 5852.044 kb on + strandat 5852.045 kb on - strandat 5852.253 kb on + strandat 5852.254 kb on - strandat 5852.301 kb on + strandat 5852.301 kb on + strandat 5852.301 kb on + strandat 5852.301 kb on + strandat 5852.302 kb on - strandat 5852.302 kb on - strandat 5852.302 kb on - strandat 5852.302 kb on - strandat 5852.302 kb on - strandat 5852.302 kb on - strandat 5852.408 kb on + strand, within Psyr_4937at 5852.408 kb on + strand, within Psyr_4937at 5852.408 kb on + strand, within Psyr_4937at 5852.409 kb on - strand, within Psyr_4937at 5852.409 kb on - strand, within Psyr_4937at 5852.409 kb on - strand, within Psyr_4937at 5852.417 kb on - strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.472 kb on + strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.473 kb on - strand, within Psyr_4937at 5852.563 kb on - strand, within Psyr_4937at 5852.563 kb on - strand, within Psyr_4937at 5852.563 kb on - strand, within Psyr_4937at 5852.635 kb on - strand, within Psyr_4937at 5852.635 kb on - strand, within Psyr_4937at 5853.069 kb on + strand, within Psyr_4937at 5853.070 kb on - strand, within Psyr_4937at 5853.676 kb on + strand, within Psyr_4937at 5853.677 kb on - strand, within Psyr_4937at 5853.712 kb on - strand, within Psyr_4937at 5853.712 kb on - strand, within Psyr_4937at 5853.819 kb on - strandat 5854.068 kb on + strandat 5854.068 kb on + strandat 5854.068 kb on + strandat 5854.068 kb on + strandat 5854.069 kb on - strandat 5854.236 kb on + strand, within Psyr_4938at 5854.236 kb on + strand, within Psyr_4938at 5854.236 kb on + strand, within Psyr_4938at 5854.236 kb on + strand, within Psyr_4938at 5854.236 kb on + strand, within Psyr_4938at 5854.237 kb on - strand, within Psyr_4938at 5854.237 kb on - strand, within Psyr_4938at 5854.237 kb on - strand, within Psyr_4938at 5854.237 kb on - strand, within Psyr_4938at 5854.237 kb on - strand, within Psyr_4938at 5854.694 kb on - strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.883 kb on + strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938at 5854.884 kb on - strand, within Psyr_4938

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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5,851,169 + Psyr_4935 0.83 +0.6
5,851,259 + +0.2
5,851,305 - -1.4
5,851,336 + -0.9
5,851,410 + -0.6
5,851,410 + -1.3
5,851,410 + -2.2
5,851,411 - -0.6
5,851,411 - -1.8
5,852,042 - +0.2
5,852,042 - +1.1
5,852,044 + -0.7
5,852,044 + -0.3
5,852,044 + +1.0
5,852,045 - -0.5
5,852,253 + +0.7
5,852,254 - +0.6
5,852,301 + +0.5
5,852,301 + -0.2
5,852,301 + -2.5
5,852,301 + -1.6
5,852,302 - +0.4
5,852,302 - -0.5
5,852,302 - +0.0
5,852,302 - -0.1
5,852,302 - -1.5
5,852,302 - +0.2
5,852,408 + Psyr_4937 0.14 +0.2
5,852,408 + Psyr_4937 0.14 -3.2
5,852,408 + Psyr_4937 0.14 +0.0
5,852,409 - Psyr_4937 0.15 -0.4
5,852,409 - Psyr_4937 0.15 +0.0
5,852,409 - Psyr_4937 0.15 -1.4
5,852,417 - Psyr_4937 0.15 +0.2
5,852,472 + Psyr_4937 0.18 -0.1
5,852,472 + Psyr_4937 0.18 -0.9
5,852,472 + Psyr_4937 0.18 -0.4
5,852,472 + Psyr_4937 0.18 -0.8
5,852,472 + Psyr_4937 0.18 -0.3
5,852,472 + Psyr_4937 0.18 -0.3
5,852,472 + Psyr_4937 0.18 -1.3
5,852,472 + Psyr_4937 0.18 -1.1
5,852,473 - Psyr_4937 0.18 +0.6
5,852,473 - Psyr_4937 0.18 -0.1
5,852,473 - Psyr_4937 0.18 +0.1
5,852,473 - Psyr_4937 0.18 -0.9
5,852,473 - Psyr_4937 0.18 -3.2
5,852,473 - Psyr_4937 0.18 -0.7
5,852,473 - Psyr_4937 0.18 -0.9
5,852,473 - Psyr_4937 0.18 +0.8
5,852,473 - Psyr_4937 0.18 +1.0
5,852,473 - Psyr_4937 0.18 -0.6
5,852,473 - Psyr_4937 0.18 +0.6
5,852,473 - Psyr_4937 0.18 +0.3
5,852,563 - Psyr_4937 0.23 +0.3
5,852,563 - Psyr_4937 0.23 -0.8
5,852,563 - Psyr_4937 0.23 +1.1
5,852,635 - Psyr_4937 0.27 -0.4
5,852,635 - Psyr_4937 0.27 +0.9
5,853,069 + Psyr_4937 0.51 -0.7
5,853,070 - Psyr_4937 0.51 -0.5
5,853,676 + Psyr_4937 0.84 +0.9
5,853,677 - Psyr_4937 0.84 +0.4
5,853,712 - Psyr_4937 0.86 +0.8
5,853,712 - Psyr_4937 0.86 -2.5
5,853,819 - -0.8
5,854,068 + -0.0
5,854,068 + -0.2
5,854,068 + +0.3
5,854,068 + -1.1
5,854,069 - -0.2
5,854,236 + Psyr_4938 0.20 +0.3
5,854,236 + Psyr_4938 0.20 -1.6
5,854,236 + Psyr_4938 0.20 -1.3
5,854,236 + Psyr_4938 0.20 +0.5
5,854,236 + Psyr_4938 0.20 +0.1
5,854,237 - Psyr_4938 0.20 -0.1
5,854,237 - Psyr_4938 0.20 +0.3
5,854,237 - Psyr_4938 0.20 +0.0
5,854,237 - Psyr_4938 0.20 -1.2
5,854,237 - Psyr_4938 0.20 -0.8
5,854,694 - Psyr_4938 0.53 +0.6
5,854,883 + Psyr_4938 0.67 -0.7
5,854,883 + Psyr_4938 0.67 +0.8
5,854,883 + Psyr_4938 0.67 +0.1
5,854,883 + Psyr_4938 0.67 -0.5
5,854,883 + Psyr_4938 0.67 +1.2
5,854,883 + Psyr_4938 0.67 +0.6
5,854,883 + Psyr_4938 0.67 +0.2
5,854,883 + Psyr_4938 0.67 +0.5
5,854,883 + Psyr_4938 0.67 -0.9
5,854,884 - Psyr_4938 0.67 +0.6
5,854,884 - Psyr_4938 0.67 +1.9
5,854,884 - Psyr_4938 0.67 +1.8
5,854,884 - Psyr_4938 0.67 +0.6
5,854,884 - Psyr_4938 0.67 +1.4
5,854,884 - Psyr_4938 0.67 -0.3
5,854,884 - Psyr_4938 0.67 -0.1

Or see this region's nucleotide sequence