Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4778 and Psyr_4779 are separated by 2 nucleotides Psyr_4779 and Psyr_4780 overlap by 11 nucleotides Psyr_4780 and Psyr_4781 overlap by 1 nucleotides
Psyr_4778: Psyr_4778 - hypothetical protein, at 5,658,739 to 5,665,875
_4778
Psyr_4779: Psyr_4779 - electron transfer flavoprotein, beta subunit, at 5,665,878 to 5,666,675
_4779
Psyr_4780: Psyr_4780 - Electron transfer flavoprotein, alpha subunit, at 5,666,665 to 5,667,885
_4780
Psyr_4781: Psyr_4781 - 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, at 5,667,885 to 5,669,849
_4781
Position (kb) 5666
5667
5668 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5665.797 kb on + strand at 5665.797 kb on + strand at 5665.797 kb on + strand at 5665.798 kb on - strand at 5665.798 kb on - strand at 5665.798 kb on - strand at 5665.804 kb on + strand at 5665.804 kb on + strand at 5665.804 kb on + strand at 5665.810 kb on + strand at 5665.810 kb on + strand at 5665.810 kb on + strand at 5665.811 kb on - strand at 5665.851 kb on + strand at 5665.852 kb on - strand at 5665.852 kb on - strand at 5665.879 kb on + strand at 5665.879 kb on + strand at 5665.879 kb on + strand at 5665.880 kb on - strand at 5665.880 kb on - strand at 5665.880 kb on - strand at 5665.880 kb on - strand at 5665.880 kb on - strand at 5665.880 kb on - strand at 5665.880 kb on - strand at 5666.079 kb on + strand, within Psyr_4779 at 5666.080 kb on - strand, within Psyr_4779 at 5666.640 kb on + strand at 5666.640 kb on + strand at 5666.651 kb on + strand at 5666.651 kb on + strand at 5666.728 kb on + strand at 5666.729 kb on - strand at 5666.755 kb on + strand at 5666.756 kb on - strand at 5666.870 kb on + strand, within Psyr_4780 at 5666.870 kb on + strand, within Psyr_4780 at 5666.870 kb on + strand, within Psyr_4780 at 5666.870 kb on + strand, within Psyr_4780 at 5666.870 kb on + strand, within Psyr_4780 at 5666.870 kb on + strand, within Psyr_4780 at 5666.870 kb on + strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.871 kb on - strand, within Psyr_4780 at 5666.905 kb on + strand, within Psyr_4780 at 5666.905 kb on + strand, within Psyr_4780 at 5666.906 kb on - strand, within Psyr_4780 at 5667.248 kb on - strand, within Psyr_4780 at 5667.248 kb on - strand, within Psyr_4780 at 5667.248 kb on - strand, within Psyr_4780 at 5667.615 kb on + strand, within Psyr_4780 at 5667.616 kb on - strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.617 kb on + strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.618 kb on - strand, within Psyr_4780 at 5667.650 kb on - strand, within Psyr_4780 at 5667.714 kb on + strand, within Psyr_4780 at 5667.715 kb on - strand, within Psyr_4780 at 5668.249 kb on + strand, within Psyr_4781 at 5668.265 kb on - strand, within Psyr_4781 at 5668.265 kb on - strand, within Psyr_4781 at 5668.265 kb on - strand, within Psyr_4781 at 5668.265 kb on - strand, within Psyr_4781 at 5668.355 kb on - strand, within Psyr_4781 at 5668.375 kb on + strand, within Psyr_4781 at 5668.389 kb on + strand, within Psyr_4781 at 5668.389 kb on + strand, within Psyr_4781 at 5668.389 kb on + strand, within Psyr_4781 at 5668.390 kb on - strand, within Psyr_4781 at 5668.390 kb on - strand, within Psyr_4781 at 5668.435 kb on + strand, within Psyr_4781
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,665,797 + -1.1 5,665,797 + -0.2 5,665,797 + -0.0 5,665,798 - -0.0 5,665,798 - +1.3 5,665,798 - -0.0 5,665,804 + +0.5 5,665,804 + -0.0 5,665,804 + -0.3 5,665,810 + -0.3 5,665,810 + -0.0 5,665,810 + +2.6 5,665,811 - -0.0 5,665,851 + +0.3 5,665,852 - +0.8 5,665,852 - +0.4 5,665,879 + -2.4 5,665,879 + +0.3 5,665,879 + -0.2 5,665,880 - -2.0 5,665,880 - +0.9 5,665,880 - +1.2 5,665,880 - -0.1 5,665,880 - -1.0 5,665,880 - +0.3 5,665,880 - -0.0 5,666,079 + Psyr_4779 0.25 +1.2 5,666,080 - Psyr_4779 0.25 -0.4 5,666,640 + -2.4 5,666,640 + +0.4 5,666,651 + +0.9 5,666,651 + +0.5 5,666,728 + +1.0 5,666,729 - -1.2 5,666,755 + +1.0 5,666,756 - +1.4 5,666,870 + Psyr_4780 0.17 -0.7 5,666,870 + Psyr_4780 0.17 -0.8 5,666,870 + Psyr_4780 0.17 +0.5 5,666,870 + Psyr_4780 0.17 +1.0 5,666,870 + Psyr_4780 0.17 +1.1 5,666,870 + Psyr_4780 0.17 +1.1 5,666,870 + Psyr_4780 0.17 +0.3 5,666,871 - Psyr_4780 0.17 +1.2 5,666,871 - Psyr_4780 0.17 +1.5 5,666,871 - Psyr_4780 0.17 +0.0 5,666,871 - Psyr_4780 0.17 +1.2 5,666,871 - Psyr_4780 0.17 +1.7 5,666,871 - Psyr_4780 0.17 -0.5 5,666,871 - Psyr_4780 0.17 +2.1 5,666,871 - Psyr_4780 0.17 +1.4 5,666,871 - Psyr_4780 0.17 -0.6 5,666,905 + Psyr_4780 0.20 -0.0 5,666,905 + Psyr_4780 0.20 +0.6 5,666,906 - Psyr_4780 0.20 -0.2 5,667,248 - Psyr_4780 0.48 -0.9 5,667,248 - Psyr_4780 0.48 +0.4 5,667,248 - Psyr_4780 0.48 +1.1 5,667,615 + Psyr_4780 0.78 -0.1 5,667,616 - Psyr_4780 0.78 -0.2 5,667,617 + Psyr_4780 0.78 +1.4 5,667,617 + Psyr_4780 0.78 -0.2 5,667,617 + Psyr_4780 0.78 -0.0 5,667,617 + Psyr_4780 0.78 -0.5 5,667,617 + Psyr_4780 0.78 +0.1 5,667,617 + Psyr_4780 0.78 -0.2 5,667,617 + Psyr_4780 0.78 +1.0 5,667,617 + Psyr_4780 0.78 -1.2 5,667,617 + Psyr_4780 0.78 +1.2 5,667,617 + Psyr_4780 0.78 -0.1 5,667,617 + Psyr_4780 0.78 +0.7 5,667,617 + Psyr_4780 0.78 +0.2 5,667,617 + Psyr_4780 0.78 -1.6 5,667,618 - Psyr_4780 0.78 +0.0 5,667,618 - Psyr_4780 0.78 +0.9 5,667,618 - Psyr_4780 0.78 +1.0 5,667,618 - Psyr_4780 0.78 +1.9 5,667,618 - Psyr_4780 0.78 +0.4 5,667,618 - Psyr_4780 0.78 -2.9 5,667,618 - Psyr_4780 0.78 +0.8 5,667,618 - Psyr_4780 0.78 +0.8 5,667,618 - Psyr_4780 0.78 +1.1 5,667,618 - Psyr_4780 0.78 +1.6 5,667,618 - Psyr_4780 0.78 -0.5 5,667,650 - Psyr_4780 0.81 +1.3 5,667,714 + Psyr_4780 0.86 -0.2 5,667,715 - Psyr_4780 0.86 +0.9 5,668,249 + Psyr_4781 0.19 -1.5 5,668,265 - Psyr_4781 0.19 +0.3 5,668,265 - Psyr_4781 0.19 -0.8 5,668,265 - Psyr_4781 0.19 -0.5 5,668,265 - Psyr_4781 0.19 -0.2 5,668,355 - Psyr_4781 0.24 -0.0 5,668,375 + Psyr_4781 0.25 +0.4 5,668,389 + Psyr_4781 0.26 -0.2 5,668,389 + Psyr_4781 0.26 +1.7 5,668,389 + Psyr_4781 0.26 -0.0 5,668,390 - Psyr_4781 0.26 +1.0 5,668,390 - Psyr_4781 0.26 +0.3 5,668,435 + Psyr_4781 0.28 -2.2
Or see this region's nucleotide sequence