Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4768

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4767 and Psyr_4768 overlap by 1 nucleotidesPsyr_4768 and Psyr_4769 are separated by 9 nucleotides Psyr_4767: Psyr_4767 - Peptidase U62, modulator of DNA gyrase, at 5,642,392 to 5,643,834 _4767 Psyr_4768: Psyr_4768 - conserved hypothetical protein, at 5,643,834 to 5,645,159 _4768 Psyr_4769: Psyr_4769 - Major facilitator superfamily, at 5,645,169 to 5,646,581 _4769 Position (kb) 5643 5644 5645 5646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5642.860 kb on + strand, within Psyr_4767at 5642.861 kb on - strand, within Psyr_4767at 5642.933 kb on - strand, within Psyr_4767at 5642.973 kb on + strand, within Psyr_4767at 5642.974 kb on - strand, within Psyr_4767at 5643.193 kb on + strand, within Psyr_4767at 5643.193 kb on + strand, within Psyr_4767at 5643.194 kb on - strand, within Psyr_4767at 5643.241 kb on + strand, within Psyr_4767at 5643.242 kb on - strand, within Psyr_4767at 5643.263 kb on + strand, within Psyr_4767at 5643.263 kb on + strand, within Psyr_4767at 5643.302 kb on - strand, within Psyr_4767at 5643.302 kb on - strand, within Psyr_4767at 5643.651 kb on + strand, within Psyr_4767at 5643.651 kb on + strand, within Psyr_4767at 5643.652 kb on - strand, within Psyr_4767at 5643.652 kb on - strand, within Psyr_4767at 5643.652 kb on - strand, within Psyr_4767at 5643.655 kb on + strand, within Psyr_4767at 5643.656 kb on - strand, within Psyr_4767at 5643.656 kb on - strand, within Psyr_4767at 5643.656 kb on - strand, within Psyr_4767at 5643.773 kb on + strandat 5643.773 kb on + strandat 5643.773 kb on + strandat 5643.774 kb on - strandat 5643.916 kb on - strandat 5644.257 kb on + strand, within Psyr_4768at 5644.383 kb on + strand, within Psyr_4768at 5644.383 kb on + strand, within Psyr_4768at 5644.383 kb on + strand, within Psyr_4768at 5644.492 kb on - strand, within Psyr_4768at 5644.500 kb on + strand, within Psyr_4768at 5644.501 kb on - strand, within Psyr_4768at 5644.602 kb on + strand, within Psyr_4768at 5644.603 kb on - strand, within Psyr_4768at 5644.603 kb on - strand, within Psyr_4768at 5644.767 kb on + strand, within Psyr_4768at 5644.820 kb on + strand, within Psyr_4768at 5644.821 kb on - strand, within Psyr_4768at 5644.821 kb on - strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.878 kb on + strand, within Psyr_4768at 5644.879 kb on - strand, within Psyr_4768at 5644.879 kb on - strand, within Psyr_4768at 5645.020 kb on - strand, within Psyr_4768at 5645.084 kb on + strandat 5645.085 kb on - strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.088 kb on + strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.089 kb on - strandat 5645.113 kb on + strandat 5645.113 kb on + strandat 5645.155 kb on + strandat 5645.156 kb on - strandat 5645.156 kb on - strandat 5645.156 kb on - strandat 5645.157 kb on + strandat 5645.157 kb on + strandat 5645.157 kb on + strandat 5645.158 kb on - strandat 5645.168 kb on + strandat 5645.169 kb on - strandat 5645.346 kb on + strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.347 kb on - strand, within Psyr_4769at 5645.555 kb on - strand, within Psyr_4769at 5645.600 kb on + strand, within Psyr_4769at 5645.664 kb on + strand, within Psyr_4769at 5645.665 kb on - strand, within Psyr_4769at 5645.665 kb on - strand, within Psyr_4769at 5645.722 kb on - strand, within Psyr_4769at 5645.722 kb on - strand, within Psyr_4769at 5645.722 kb on - strand, within Psyr_4769at 5645.813 kb on - strand, within Psyr_4769at 5645.873 kb on - strand, within Psyr_4769at 5645.911 kb on - strand, within Psyr_4769at 5645.987 kb on + strand, within Psyr_4769

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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5,642,860 + Psyr_4767 0.32 -1.1
5,642,861 - Psyr_4767 0.33 +0.5
5,642,933 - Psyr_4767 0.37 +0.6
5,642,973 + Psyr_4767 0.40 +1.5
5,642,974 - Psyr_4767 0.40 +1.2
5,643,193 + Psyr_4767 0.56 +0.3
5,643,193 + Psyr_4767 0.56 +0.8
5,643,194 - Psyr_4767 0.56 -1.4
5,643,241 + Psyr_4767 0.59 -1.6
5,643,242 - Psyr_4767 0.59 +1.3
5,643,263 + Psyr_4767 0.60 -0.6
5,643,263 + Psyr_4767 0.60 +0.0
5,643,302 - Psyr_4767 0.63 -0.2
5,643,302 - Psyr_4767 0.63 +0.6
5,643,651 + Psyr_4767 0.87 -0.1
5,643,651 + Psyr_4767 0.87 -0.1
5,643,652 - Psyr_4767 0.87 -0.9
5,643,652 - Psyr_4767 0.87 +1.1
5,643,652 - Psyr_4767 0.87 +0.7
5,643,655 + Psyr_4767 0.88 +0.5
5,643,656 - Psyr_4767 0.88 -0.2
5,643,656 - Psyr_4767 0.88 +0.8
5,643,656 - Psyr_4767 0.88 -1.5
5,643,773 + -0.1
5,643,773 + +1.3
5,643,773 + +0.3
5,643,774 - -1.1
5,643,916 - -0.6
5,644,257 + Psyr_4768 0.32 +0.0
5,644,383 + Psyr_4768 0.41 +1.0
5,644,383 + Psyr_4768 0.41 +1.9
5,644,383 + Psyr_4768 0.41 -2.8
5,644,492 - Psyr_4768 0.50 +0.9
5,644,500 + Psyr_4768 0.50 +0.6
5,644,501 - Psyr_4768 0.50 -0.1
5,644,602 + Psyr_4768 0.58 +0.0
5,644,603 - Psyr_4768 0.58 -0.1
5,644,603 - Psyr_4768 0.58 +0.4
5,644,767 + Psyr_4768 0.70 -0.1
5,644,820 + Psyr_4768 0.74 -0.1
5,644,821 - Psyr_4768 0.74 +1.5
5,644,821 - Psyr_4768 0.74 +0.4
5,644,878 + Psyr_4768 0.79 +0.9
5,644,878 + Psyr_4768 0.79 +2.4
5,644,878 + Psyr_4768 0.79 +0.2
5,644,878 + Psyr_4768 0.79 +1.4
5,644,879 - Psyr_4768 0.79 +1.4
5,644,879 - Psyr_4768 0.79 +0.2
5,645,020 - Psyr_4768 0.89 +0.4
5,645,084 + -0.9
5,645,085 - -3.2
5,645,088 + -2.3
5,645,088 + +1.1
5,645,088 + +0.0
5,645,088 + +0.4
5,645,088 + +0.9
5,645,088 + +1.5
5,645,089 - +2.8
5,645,089 - +0.9
5,645,089 - -1.4
5,645,089 - -0.4
5,645,089 - +0.4
5,645,089 - +2.3
5,645,113 + -1.6
5,645,113 + +1.2
5,645,155 + +0.8
5,645,156 - +0.9
5,645,156 - -1.3
5,645,156 - +1.9
5,645,157 + +0.2
5,645,157 + +0.6
5,645,157 + -0.1
5,645,158 - -0.6
5,645,168 + +1.2
5,645,169 - -1.0
5,645,346 + Psyr_4769 0.13 +0.4
5,645,347 - Psyr_4769 0.13 -1.2
5,645,347 - Psyr_4769 0.13 +0.7
5,645,347 - Psyr_4769 0.13 -0.6
5,645,347 - Psyr_4769 0.13 -0.2
5,645,555 - Psyr_4769 0.27 -2.4
5,645,600 + Psyr_4769 0.31 +1.8
5,645,664 + Psyr_4769 0.35 -1.4
5,645,665 - Psyr_4769 0.35 +0.3
5,645,665 - Psyr_4769 0.35 +0.5
5,645,722 - Psyr_4769 0.39 +0.2
5,645,722 - Psyr_4769 0.39 -0.9
5,645,722 - Psyr_4769 0.39 -3.6
5,645,813 - Psyr_4769 0.46 +0.5
5,645,873 - Psyr_4769 0.50 +0.5
5,645,911 - Psyr_4769 0.53 +4.1
5,645,987 + Psyr_4769 0.58 -1.4

Or see this region's nucleotide sequence