Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4764 and Psyr_4765 are separated by 489 nucleotides Psyr_4765 and Psyr_4766 are separated by 99 nucleotides
Psyr_4764: Psyr_4764 - SAM-dependent methyltransferase, at 5,638,696 to 5,639,892
_4764
Psyr_4765: Psyr_4765 - TraX, at 5,640,382 to 5,641,128
_4765
Psyr_4766: Psyr_4766 - L-threonine aldolase, at 5,641,228 to 5,642,268
_4766
Position (kb) 5640
5641
5642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.383 kb on + strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.384 kb on - strand, within Psyr_4764 at 5639.851 kb on + strand at 5639.852 kb on - strand at 5639.945 kb on - strand at 5639.945 kb on - strand at 5639.950 kb on + strand at 5639.950 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.231 kb on + strand at 5640.276 kb on + strand at 5640.276 kb on + strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.277 kb on - strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.280 kb on + strand at 5640.281 kb on - strand at 5640.281 kb on - strand at 5640.705 kb on - strand, within Psyr_4765 at 5640.899 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.001 kb on + strand, within Psyr_4765 at 5641.002 kb on - strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.028 kb on + strand, within Psyr_4765 at 5641.029 kb on - strand, within Psyr_4765 at 5641.029 kb on - strand, within Psyr_4765 at 5641.050 kb on + strand, within Psyr_4765 at 5641.051 kb on - strand, within Psyr_4765 at 5641.051 kb on - strand, within Psyr_4765 at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.128 kb on + strand at 5641.129 kb on - strand at 5641.129 kb on - strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.180 kb on + strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.181 kb on - strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.182 kb on + strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.183 kb on - strand at 5641.192 kb on - strand at 5641.206 kb on - strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.264 kb on + strand at 5641.265 kb on - strand at 5641.265 kb on - strand at 5641.265 kb on - strand at 5641.330 kb on + strand at 5641.330 kb on + strand at 5641.331 kb on - strand at 5641.331 kb on - strand at 5641.331 kb on - strand at 5641.462 kb on + strand, within Psyr_4766 at 5641.462 kb on + strand, within Psyr_4766 at 5641.463 kb on - strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.682 kb on - strand, within Psyr_4766
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,639,383 + Psyr_4764 0.57 -0.0 5,639,383 + Psyr_4764 0.57 -1.9 5,639,383 + Psyr_4764 0.57 -1.1 5,639,383 + Psyr_4764 0.57 -1.6 5,639,383 + Psyr_4764 0.57 +1.4 5,639,383 + Psyr_4764 0.57 +0.2 5,639,383 + Psyr_4764 0.57 +1.0 5,639,383 + Psyr_4764 0.57 +0.3 5,639,383 + Psyr_4764 0.57 -3.5 5,639,383 + Psyr_4764 0.57 +0.5 5,639,383 + Psyr_4764 0.57 +1.3 5,639,383 + Psyr_4764 0.57 -1.8 5,639,383 + Psyr_4764 0.57 -0.0 5,639,383 + Psyr_4764 0.57 +0.8 5,639,383 + Psyr_4764 0.57 +1.3 5,639,384 - Psyr_4764 0.57 -1.6 5,639,384 - Psyr_4764 0.57 -0.2 5,639,384 - Psyr_4764 0.57 +0.5 5,639,384 - Psyr_4764 0.57 +0.2 5,639,384 - Psyr_4764 0.57 -0.1 5,639,384 - Psyr_4764 0.57 -1.0 5,639,384 - Psyr_4764 0.57 +2.2 5,639,384 - Psyr_4764 0.57 -0.6 5,639,384 - Psyr_4764 0.57 +0.2 5,639,384 - -2.0 5,639,384 - Psyr_4764 0.57 +1.2 5,639,384 - Psyr_4764 0.57 +0.1 5,639,384 - Psyr_4764 0.57 +0.1 5,639,384 - Psyr_4764 0.57 -0.2 5,639,384 - Psyr_4764 0.57 +0.2 5,639,384 - Psyr_4764 0.57 +0.4 5,639,384 - Psyr_4764 0.57 +2.0 5,639,384 - Psyr_4764 0.57 -0.2 5,639,384 - Psyr_4764 0.57 +3.8 5,639,851 + -0.3 5,639,852 - +1.6 5,639,945 - +1.9 5,639,945 - -0.0 5,639,950 + -1.3 5,639,950 + +0.2 5,640,231 + +0.5 5,640,231 + -0.4 5,640,231 + +0.7 5,640,276 + +0.0 5,640,276 + +0.1 5,640,277 - +0.7 5,640,277 - -1.0 5,640,277 - -1.3 5,640,277 - -0.1 5,640,280 + -0.5 5,640,280 + -0.8 5,640,280 + -0.6 5,640,281 - +1.2 5,640,281 - +3.0 5,640,705 - Psyr_4765 0.43 -1.9 5,640,899 + Psyr_4765 0.69 -2.5 5,641,001 + Psyr_4765 0.83 +0.5 5,641,001 + Psyr_4765 0.83 -0.3 5,641,001 + Psyr_4765 0.83 -1.0 5,641,002 - Psyr_4765 0.83 -2.4 5,641,028 + Psyr_4765 0.86 -0.2 5,641,028 + Psyr_4765 0.86 -2.9 5,641,028 + Psyr_4765 0.86 +0.5 5,641,029 - Psyr_4765 0.87 -0.0 5,641,029 - Psyr_4765 0.87 -0.3 5,641,050 + Psyr_4765 0.89 -0.3 5,641,051 - Psyr_4765 0.90 -1.0 5,641,051 - Psyr_4765 0.90 +1.6 5,641,128 + -0.0 5,641,128 + -2.4 5,641,128 + -1.6 5,641,128 + +0.2 5,641,129 - +0.0 5,641,129 - -0.6 5,641,180 + -0.8 5,641,180 + -0.5 5,641,180 + -0.0 5,641,180 + +0.1 5,641,180 + +0.6 5,641,180 + -1.8 5,641,180 + -2.2 5,641,180 + -1.0 5,641,180 + +0.8 5,641,180 + -0.2 5,641,181 - -0.5 5,641,181 - +1.3 5,641,181 - -0.4 5,641,181 - +0.0 5,641,181 - -0.2 5,641,181 - -0.2 5,641,181 - -0.6 5,641,181 - +0.2 5,641,181 - -0.9 5,641,181 - -0.6 5,641,181 - +0.4 5,641,181 - -0.7 5,641,181 - +0.3 5,641,181 - +0.7 5,641,181 - +0.5 5,641,181 - -0.3 5,641,181 - +2.1 5,641,181 - -3.8 5,641,181 - -0.0 5,641,181 - +1.1 5,641,181 - -2.4 5,641,182 + -0.5 5,641,182 + +0.1 5,641,182 + -1.5 5,641,182 + +0.1 5,641,182 + +1.6 5,641,182 + +1.5 5,641,182 + -0.2 5,641,182 + -0.4 5,641,182 + +0.7 5,641,182 + -0.9 5,641,183 - +1.0 5,641,183 - +0.3 5,641,183 - -0.9 5,641,183 - -0.9 5,641,183 - -1.0 5,641,183 - -0.1 5,641,183 - -2.0 5,641,183 - +0.5 5,641,183 - +0.7 5,641,183 - +0.2 5,641,192 - +0.5 5,641,206 - -1.4 5,641,264 + +1.9 5,641,264 + -0.4 5,641,264 + +0.6 5,641,264 + +0.1 5,641,264 + +1.1 5,641,264 + -0.1 5,641,265 - +0.4 5,641,265 - -0.1 5,641,265 - +0.6 5,641,330 + -2.8 5,641,330 + +1.4 5,641,331 - -0.3 5,641,331 - +1.4 5,641,331 - +1.4 5,641,462 + Psyr_4766 0.22 -1.4 5,641,462 + Psyr_4766 0.22 -0.9 5,641,463 - Psyr_4766 0.23 +0.5 5,641,681 + Psyr_4766 0.44 -0.6 5,641,681 + Psyr_4766 0.44 +1.0 5,641,681 + Psyr_4766 0.44 -0.6 5,641,681 + Psyr_4766 0.44 -0.8 5,641,682 - Psyr_4766 0.44 +1.4
Or see this region's nucleotide sequence