Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4501

Experiment: KB with Ferulic Acid 180 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4500 and Psyr_4501 are separated by 78 nucleotidesPsyr_4501 and Psyr_4502 are separated by 164 nucleotides Psyr_4500: Psyr_4500 - 4-phytase, at 5,363,481 to 5,364,764 _4500 Psyr_4501: Psyr_4501 - transcriptional regulator, MarR family, at 5,364,843 to 5,365,973 _4501 Psyr_4502: Psyr_4502 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 5,366,138 to 5,367,457 _4502 Position (kb) 5364 5365 5366Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.902 kb on + strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.903 kb on - strand, within Psyr_4500at 5363.908 kb on + strand, within Psyr_4500at 5363.908 kb on + strand, within Psyr_4500at 5363.908 kb on + strand, within Psyr_4500at 5363.908 kb on + strand, within Psyr_4500at 5363.908 kb on + strand, within Psyr_4500at 5363.909 kb on - strand, within Psyr_4500at 5363.909 kb on - strand, within Psyr_4500at 5363.909 kb on - strand, within Psyr_4500at 5363.909 kb on - strand, within Psyr_4500at 5363.909 kb on - strand, within Psyr_4500at 5364.217 kb on - strand, within Psyr_4500at 5364.277 kb on + strand, within Psyr_4500at 5364.278 kb on - strand, within Psyr_4500at 5364.309 kb on + strand, within Psyr_4500at 5364.310 kb on - strand, within Psyr_4500at 5364.310 kb on - strand, within Psyr_4500at 5364.328 kb on + strand, within Psyr_4500at 5364.328 kb on + strand, within Psyr_4500at 5364.328 kb on + strand, within Psyr_4500at 5364.328 kb on + strand, within Psyr_4500at 5364.329 kb on - strand, within Psyr_4500at 5364.329 kb on - strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.333 kb on + strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.334 kb on - strand, within Psyr_4500at 5364.433 kb on - strand, within Psyr_4500at 5364.433 kb on - strand, within Psyr_4500at 5364.436 kb on + strand, within Psyr_4500at 5364.436 kb on + strand, within Psyr_4500at 5364.437 kb on - strand, within Psyr_4500at 5364.591 kb on + strand, within Psyr_4500at 5364.591 kb on + strand, within Psyr_4500at 5364.591 kb on + strand, within Psyr_4500at 5364.592 kb on - strand, within Psyr_4500at 5364.592 kb on - strand, within Psyr_4500at 5364.592 kb on - strand, within Psyr_4500at 5364.663 kb on + strandat 5364.742 kb on + strandat 5364.742 kb on + strandat 5364.743 kb on - strandat 5364.751 kb on - strandat 5364.817 kb on + strandat 5364.817 kb on + strandat 5364.817 kb on + strandat 5364.818 kb on - strandat 5364.921 kb on + strandat 5364.921 kb on + strandat 5364.921 kb on + strandat 5364.921 kb on + strandat 5364.921 kb on + strandat 5364.921 kb on + strandat 5364.921 kb on + strandat 5364.922 kb on - strandat 5364.922 kb on - strandat 5364.922 kb on - strandat 5364.922 kb on - strandat 5364.922 kb on - strandat 5364.950 kb on - strandat 5364.950 kb on - strandat 5364.950 kb on - strandat 5365.195 kb on + strand, within Psyr_4501at 5365.234 kb on + strand, within Psyr_4501at 5365.234 kb on + strand, within Psyr_4501at 5365.234 kb on + strand, within Psyr_4501at 5365.234 kb on + strand, within Psyr_4501at 5365.235 kb on - strand, within Psyr_4501at 5365.273 kb on + strand, within Psyr_4501at 5365.273 kb on + strand, within Psyr_4501at 5365.274 kb on - strand, within Psyr_4501at 5365.274 kb on - strand, within Psyr_4501at 5365.274 kb on - strand, within Psyr_4501at 5365.274 kb on - strand, within Psyr_4501at 5365.274 kb on - strand, within Psyr_4501at 5365.327 kb on + strand, within Psyr_4501at 5365.327 kb on + strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.328 kb on - strand, within Psyr_4501at 5365.704 kb on + strand, within Psyr_4501at 5365.717 kb on + strand, within Psyr_4501at 5365.717 kb on + strand, within Psyr_4501at 5365.717 kb on + strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.718 kb on - strand, within Psyr_4501at 5365.869 kb on - strandat 5365.997 kb on + strandat 5365.997 kb on + strandat 5365.998 kb on - strandat 5366.063 kb on + strandat 5366.088 kb on + strandat 5366.089 kb on - strandat 5366.092 kb on - strandat 5366.107 kb on + strandat 5366.153 kb on - strandat 5366.226 kb on - strandat 5366.330 kb on + strand, within Psyr_4502at 5366.331 kb on - strand, within Psyr_4502at 5366.331 kb on - strand, within Psyr_4502at 5366.331 kb on - strand, within Psyr_4502at 5366.331 kb on - strand, within Psyr_4502at 5366.399 kb on + strand, within Psyr_4502at 5366.400 kb on - strand, within Psyr_4502at 5366.492 kb on - strand, within Psyr_4502at 5366.516 kb on + strand, within Psyr_4502at 5366.520 kb on - strand, within Psyr_4502at 5366.579 kb on + strand, within Psyr_4502at 5366.579 kb on + strand, within Psyr_4502at 5366.579 kb on + strand, within Psyr_4502at 5366.580 kb on - strand, within Psyr_4502at 5366.580 kb on - strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
remove
5,363,902 + Psyr_4500 0.33 -3.5
5,363,902 + Psyr_4500 0.33 +0.7
5,363,902 + Psyr_4500 0.33 -0.7
5,363,902 + Psyr_4500 0.33 -0.3
5,363,902 + Psyr_4500 0.33 +0.1
5,363,902 + Psyr_4500 0.33 +0.6
5,363,902 + Psyr_4500 0.33 +0.4
5,363,902 + Psyr_4500 0.33 +1.4
5,363,902 + Psyr_4500 0.33 -0.8
5,363,903 - Psyr_4500 0.33 -1.1
5,363,903 - Psyr_4500 0.33 +1.5
5,363,903 - Psyr_4500 0.33 +0.4
5,363,903 - Psyr_4500 0.33 -0.8
5,363,903 - Psyr_4500 0.33 +0.3
5,363,903 - Psyr_4500 0.33 +1.1
5,363,903 - Psyr_4500 0.33 +0.3
5,363,903 - Psyr_4500 0.33 +0.4
5,363,908 + Psyr_4500 0.33 +0.0
5,363,908 + Psyr_4500 0.33 +0.0
5,363,908 + Psyr_4500 0.33 +0.1
5,363,908 + Psyr_4500 0.33 -0.7
5,363,908 + Psyr_4500 0.33 +0.9
5,363,909 - Psyr_4500 0.33 -0.2
5,363,909 - Psyr_4500 0.33 -1.1
5,363,909 - Psyr_4500 0.33 -0.1
5,363,909 - Psyr_4500 0.33 +0.1
5,363,909 - Psyr_4500 0.33 +1.3
5,364,217 - Psyr_4500 0.57 -0.3
5,364,277 + Psyr_4500 0.62 -0.1
5,364,278 - Psyr_4500 0.62 -0.8
5,364,309 + Psyr_4500 0.64 +0.7
5,364,310 - Psyr_4500 0.65 -1.5
5,364,310 - Psyr_4500 0.65 +0.2
5,364,328 + Psyr_4500 0.66 +0.1
5,364,328 + Psyr_4500 0.66 -1.4
5,364,328 + Psyr_4500 0.66 +0.0
5,364,328 + Psyr_4500 0.66 -3.0
5,364,329 - Psyr_4500 0.66 -0.1
5,364,329 - Psyr_4500 0.66 -0.7
5,364,333 + Psyr_4500 0.66 -0.3
5,364,333 + Psyr_4500 0.66 +0.5
5,364,333 + Psyr_4500 0.66 -1.3
5,364,333 + Psyr_4500 0.66 +0.1
5,364,333 + Psyr_4500 0.66 +0.6
5,364,333 + Psyr_4500 0.66 +1.6
5,364,333 + Psyr_4500 0.66 -0.7
5,364,333 + Psyr_4500 0.66 -1.3
5,364,333 + Psyr_4500 0.66 -0.3
5,364,333 + Psyr_4500 0.66 -2.5
5,364,333 + Psyr_4500 0.66 +0.1
5,364,333 + Psyr_4500 0.66 -0.9
5,364,333 + Psyr_4500 0.66 -2.2
5,364,333 + Psyr_4500 0.66 +3.0
5,364,333 + Psyr_4500 0.66 -0.9
5,364,334 - Psyr_4500 0.66 -1.5
5,364,334 - Psyr_4500 0.66 -0.1
5,364,334 - Psyr_4500 0.66 -1.0
5,364,334 - Psyr_4500 0.66 +1.6
5,364,334 - Psyr_4500 0.66 -0.0
5,364,334 - Psyr_4500 0.66 -1.7
5,364,334 - Psyr_4500 0.66 -0.7
5,364,334 - Psyr_4500 0.66 +0.3
5,364,334 - Psyr_4500 0.66 +0.7
5,364,334 - Psyr_4500 0.66 +1.1
5,364,334 - Psyr_4500 0.66 +0.8
5,364,334 - Psyr_4500 0.66 +0.1
5,364,334 - Psyr_4500 0.66 +0.7
5,364,334 - Psyr_4500 0.66 -1.3
5,364,334 - Psyr_4500 0.66 -0.7
5,364,334 - Psyr_4500 0.66 -0.9
5,364,334 - Psyr_4500 0.66 +0.6
5,364,433 - Psyr_4500 0.74 -1.5
5,364,433 - Psyr_4500 0.74 +0.2
5,364,436 + Psyr_4500 0.74 +0.2
5,364,436 + Psyr_4500 0.74 +0.6
5,364,437 - Psyr_4500 0.74 +0.6
5,364,591 + Psyr_4500 0.86 +1.2
5,364,591 + Psyr_4500 0.86 +0.6
5,364,591 + Psyr_4500 0.86 -0.1
5,364,592 - Psyr_4500 0.87 -1.0
5,364,592 - Psyr_4500 0.87 +0.5
5,364,592 - Psyr_4500 0.87 -0.2
5,364,663 + +1.8
5,364,742 + -0.6
5,364,742 + -1.1
5,364,743 - +1.6
5,364,751 - +0.4
5,364,817 + +1.3
5,364,817 + -1.3
5,364,817 + -0.4
5,364,818 - +0.1
5,364,921 + -0.7
5,364,921 + +3.5
5,364,921 + +4.0
5,364,921 + +0.0
5,364,921 + +0.3
5,364,921 + +0.8
5,364,921 + -0.4
5,364,922 - +1.9
5,364,922 - +1.7
5,364,922 - -0.4
5,364,922 - -0.6
5,364,922 - +0.9
5,364,950 - -0.9
5,364,950 - +1.0
5,364,950 - -1.1
5,365,195 + Psyr_4501 0.31 -0.7
5,365,234 + Psyr_4501 0.35 +0.3
5,365,234 + Psyr_4501 0.35 -0.5
5,365,234 + Psyr_4501 0.35 +1.3
5,365,234 + Psyr_4501 0.35 -0.4
5,365,235 - Psyr_4501 0.35 -0.1
5,365,273 + Psyr_4501 0.38 +0.2
5,365,273 + Psyr_4501 0.38 -1.4
5,365,274 - Psyr_4501 0.38 +0.4
5,365,274 - Psyr_4501 0.38 +0.7
5,365,274 - Psyr_4501 0.38 -0.1
5,365,274 - Psyr_4501 0.38 +0.8
5,365,274 - Psyr_4501 0.38 -1.4
5,365,327 + Psyr_4501 0.43 -2.3
5,365,327 + Psyr_4501 0.43 +1.3
5,365,328 - Psyr_4501 0.43 +0.1
5,365,328 - Psyr_4501 0.43 +1.9
5,365,328 - Psyr_4501 0.43 +0.1
5,365,328 - Psyr_4501 0.43 -1.1
5,365,328 - Psyr_4501 0.43 +0.4
5,365,328 - Psyr_4501 0.43 +0.3
5,365,328 - Psyr_4501 0.43 +1.0
5,365,328 - Psyr_4501 0.43 -1.3
5,365,704 + Psyr_4501 0.76 +0.4
5,365,717 + Psyr_4501 0.77 +1.0
5,365,717 + Psyr_4501 0.77 +3.0
5,365,717 + Psyr_4501 0.77 +0.7
5,365,718 - Psyr_4501 0.77 +2.6
5,365,718 - Psyr_4501 0.77 +1.2
5,365,718 - Psyr_4501 0.77 -0.5
5,365,718 - Psyr_4501 0.77 +0.1
5,365,718 - Psyr_4501 0.77 -0.8
5,365,718 - Psyr_4501 0.77 +0.6
5,365,718 - Psyr_4501 0.77 +0.3
5,365,718 - Psyr_4501 0.77 -0.4
5,365,718 - Psyr_4501 0.77 +1.1
5,365,718 - Psyr_4501 0.77 +0.8
5,365,869 - +1.3
5,365,997 + -2.9
5,365,997 + +0.1
5,365,998 - -0.2
5,366,063 + +0.0
5,366,088 + -0.4
5,366,089 - +1.0
5,366,092 - -1.4
5,366,107 + -1.1
5,366,153 - +0.3
5,366,226 - +0.2
5,366,330 + Psyr_4502 0.15 +0.5
5,366,331 - Psyr_4502 0.15 -0.5
5,366,331 - Psyr_4502 0.15 +1.1
5,366,331 - Psyr_4502 0.15 -2.9
5,366,331 - Psyr_4502 0.15 +0.6
5,366,399 + Psyr_4502 0.20 +1.5
5,366,400 - Psyr_4502 0.20 +1.1
5,366,492 - Psyr_4502 0.27 +0.5
5,366,516 + Psyr_4502 0.29 +0.1
5,366,520 - Psyr_4502 0.29 -0.4
5,366,579 + Psyr_4502 0.33 +0.8
5,366,579 + Psyr_4502 0.33 -0.0
5,366,579 + Psyr_4502 0.33 +0.4
5,366,580 - Psyr_4502 0.33 +0.7
5,366,580 - Psyr_4502 0.33 +0.0
5,366,581 + Psyr_4502 0.34 +1.0
5,366,581 + Psyr_4502 0.34 +0.6
5,366,581 + Psyr_4502 0.34 -2.4
5,366,581 + Psyr_4502 0.34 +1.1
5,366,581 + Psyr_4502 0.34 +1.8
5,366,582 - Psyr_4502 0.34 +1.4
5,366,582 - Psyr_4502 0.34 +0.6
5,366,582 - Psyr_4502 0.34 -0.6
5,366,582 - Psyr_4502 0.34 -0.7
5,366,582 - Psyr_4502 0.34 +0.8
5,366,582 - Psyr_4502 0.34 +0.3
5,366,582 - Psyr_4502 0.34 -0.2
5,366,952 + Psyr_4502 0.62 +1.9
5,366,952 + Psyr_4502 0.62 +0.5
5,366,952 + Psyr_4502 0.62 -0.0
5,366,952 + Psyr_4502 0.62 -1.0
5,366,952 + Psyr_4502 0.62 -0.5
5,366,952 + Psyr_4502 0.62 +0.9
5,366,953 - Psyr_4502 0.62 -1.0
5,366,953 - Psyr_4502 0.62 -0.1
5,366,953 - Psyr_4502 0.62 -0.6
5,366,953 - Psyr_4502 0.62 +0.2
5,366,953 - Psyr_4502 0.62 +0.4

Or see this region's nucleotide sequence