Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4476 and Psyr_4477 are separated by 153 nucleotides Psyr_4477 and Psyr_4478 are separated by 291 nucleotides
Psyr_4476: Psyr_4476 - dTDP-4-dehydrorhamnose reductase, at 5,336,427 to 5,337,311
_4476
Psyr_4477: Psyr_4477 - MscS Mechanosensitive ion channel, at 5,337,465 to 5,339,783
_4477
Psyr_4478: Psyr_4478 - Alpha/beta hydrolase fold protein, at 5,340,075 to 5,340,893
_4478
Position (kb) 5337
5338
5339
5340 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5336.681 kb on - strand, within Psyr_4476 at 5336.681 kb on - strand, within Psyr_4476 at 5336.681 kb on - strand, within Psyr_4476 at 5336.878 kb on - strand, within Psyr_4476 at 5336.878 kb on - strand, within Psyr_4476 at 5337.128 kb on - strand, within Psyr_4476 at 5337.128 kb on - strand, within Psyr_4476 at 5337.128 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.131 kb on - strand, within Psyr_4476 at 5337.466 kb on + strand at 5337.467 kb on - strand at 5337.522 kb on + strand at 5337.522 kb on + strand at 5337.523 kb on - strand at 5337.523 kb on - strand at 5337.632 kb on - strand at 5337.632 kb on - strand at 5337.709 kb on + strand, within Psyr_4477 at 5337.710 kb on - strand, within Psyr_4477 at 5337.728 kb on + strand, within Psyr_4477 at 5337.729 kb on - strand, within Psyr_4477 at 5337.729 kb on - strand, within Psyr_4477 at 5337.886 kb on + strand, within Psyr_4477 at 5337.886 kb on + strand, within Psyr_4477 at 5337.886 kb on + strand, within Psyr_4477 at 5337.887 kb on - strand, within Psyr_4477 at 5337.887 kb on - strand, within Psyr_4477 at 5337.887 kb on - strand, within Psyr_4477 at 5338.351 kb on - strand, within Psyr_4477 at 5338.351 kb on - strand, within Psyr_4477 at 5338.477 kb on - strand, within Psyr_4477 at 5338.477 kb on - strand, within Psyr_4477 at 5338.519 kb on + strand, within Psyr_4477 at 5338.519 kb on + strand, within Psyr_4477 at 5338.520 kb on - strand, within Psyr_4477 at 5338.520 kb on - strand, within Psyr_4477 at 5338.544 kb on + strand, within Psyr_4477 at 5338.544 kb on + strand, within Psyr_4477 at 5338.545 kb on - strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.546 kb on + strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.547 kb on - strand, within Psyr_4477 at 5338.635 kb on - strand, within Psyr_4477 at 5338.635 kb on - strand, within Psyr_4477 at 5338.749 kb on + strand, within Psyr_4477 at 5338.749 kb on + strand, within Psyr_4477 at 5338.749 kb on + strand, within Psyr_4477 at 5339.098 kb on + strand, within Psyr_4477 at 5339.155 kb on + strand, within Psyr_4477 at 5339.155 kb on + strand, within Psyr_4477 at 5339.155 kb on + strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.156 kb on - strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.206 kb on + strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.207 kb on - strand, within Psyr_4477 at 5339.253 kb on - strand, within Psyr_4477 at 5339.253 kb on - strand, within Psyr_4477 at 5339.265 kb on + strand, within Psyr_4477 at 5339.265 kb on + strand, within Psyr_4477 at 5339.265 kb on + strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.266 kb on - strand, within Psyr_4477 at 5339.316 kb on + strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.317 kb on - strand, within Psyr_4477 at 5339.366 kb on + strand, within Psyr_4477 at 5339.367 kb on - strand, within Psyr_4477 at 5339.367 kb on - strand, within Psyr_4477 at 5339.484 kb on - strand, within Psyr_4477 at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.703 kb on + strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.704 kb on - strand at 5339.892 kb on + strand at 5339.893 kb on - strand at 5339.893 kb on - strand at 5339.893 kb on - strand at 5339.933 kb on - strand at 5339.956 kb on + strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.957 kb on - strand at 5339.981 kb on + strand at 5339.982 kb on - strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.002 kb on + strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.003 kb on - strand at 5340.036 kb on - strand at 5340.036 kb on - strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.111 kb on + strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.112 kb on - strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.114 kb on + strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.115 kb on - strand at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.198 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.282 kb on + strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.283 kb on - strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.396 kb on + strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.397 kb on - strand, within Psyr_4478 at 5340.564 kb on + strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478 at 5340.565 kb on - strand, within Psyr_4478
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,336,681 - Psyr_4476 0.29 -3.3 5,336,681 - Psyr_4476 0.29 +2.0 5,336,681 - Psyr_4476 0.29 +0.6 5,336,878 - Psyr_4476 0.51 -3.4 5,336,878 - Psyr_4476 0.51 -0.3 5,337,128 - Psyr_4476 0.79 -0.9 5,337,128 - Psyr_4476 0.79 -1.2 5,337,128 - Psyr_4476 0.79 -3.9 5,337,131 - Psyr_4476 0.80 -2.4 5,337,131 - Psyr_4476 0.80 +0.5 5,337,131 - Psyr_4476 0.80 -0.1 5,337,131 - Psyr_4476 0.80 -1.1 5,337,131 - Psyr_4476 0.80 -1.1 5,337,131 - Psyr_4476 0.80 -3.3 5,337,131 - Psyr_4476 0.80 +0.5 5,337,131 - Psyr_4476 0.80 -0.0 5,337,466 + +1.7 5,337,467 - -0.1 5,337,522 + +0.3 5,337,522 + -1.7 5,337,523 - -0.7 5,337,523 - -2.4 5,337,632 - +0.5 5,337,632 - -0.0 5,337,709 + Psyr_4477 0.11 +1.5 5,337,710 - Psyr_4477 0.11 -1.5 5,337,728 + Psyr_4477 0.11 +1.3 5,337,729 - Psyr_4477 0.11 -0.5 5,337,729 - Psyr_4477 0.11 -1.4 5,337,886 + Psyr_4477 0.18 -1.8 5,337,886 + Psyr_4477 0.18 +1.5 5,337,886 + Psyr_4477 0.18 +1.6 5,337,887 - Psyr_4477 0.18 +1.2 5,337,887 - Psyr_4477 0.18 -1.2 5,337,887 - Psyr_4477 0.18 +0.9 5,338,351 - Psyr_4477 0.38 +0.2 5,338,351 - Psyr_4477 0.38 -0.4 5,338,477 - Psyr_4477 0.44 +1.0 5,338,477 - Psyr_4477 0.44 -0.7 5,338,519 + Psyr_4477 0.45 -0.1 5,338,519 + Psyr_4477 0.45 +1.0 5,338,520 - Psyr_4477 0.45 -0.7 5,338,520 - Psyr_4477 0.45 -0.7 5,338,544 + Psyr_4477 0.47 +0.4 5,338,544 + Psyr_4477 0.47 -0.7 5,338,545 - Psyr_4477 0.47 +0.0 5,338,546 + Psyr_4477 0.47 +2.1 5,338,546 + Psyr_4477 0.47 +2.3 5,338,546 + Psyr_4477 0.47 +1.0 5,338,546 + Psyr_4477 0.47 -0.5 5,338,546 + Psyr_4477 0.47 +1.3 5,338,546 + Psyr_4477 0.47 +0.0 5,338,546 + Psyr_4477 0.47 +2.0 5,338,546 + Psyr_4477 0.47 -1.1 5,338,547 - Psyr_4477 0.47 +0.5 5,338,547 - Psyr_4477 0.47 +0.9 5,338,547 - Psyr_4477 0.47 -3.1 5,338,547 - Psyr_4477 0.47 +1.1 5,338,547 - Psyr_4477 0.47 +1.1 5,338,547 - Psyr_4477 0.47 +1.0 5,338,547 - Psyr_4477 0.47 -1.6 5,338,547 - Psyr_4477 0.47 +0.7 5,338,635 - Psyr_4477 0.50 -2.3 5,338,635 - Psyr_4477 0.50 -2.9 5,338,749 + Psyr_4477 0.55 -1.3 5,338,749 + Psyr_4477 0.55 +1.6 5,338,749 + Psyr_4477 0.55 -1.0 5,339,098 + Psyr_4477 0.70 -0.7 5,339,155 + Psyr_4477 0.73 -0.7 5,339,155 + Psyr_4477 0.73 +1.1 5,339,155 + Psyr_4477 0.73 -0.7 5,339,156 - Psyr_4477 0.73 -0.3 5,339,156 - Psyr_4477 0.73 +0.3 5,339,156 - Psyr_4477 0.73 -1.3 5,339,156 - Psyr_4477 0.73 -0.0 5,339,206 + Psyr_4477 0.75 +0.6 5,339,206 + Psyr_4477 0.75 -1.4 5,339,206 + Psyr_4477 0.75 +0.6 5,339,206 + Psyr_4477 0.75 -1.9 5,339,207 - Psyr_4477 0.75 -0.8 5,339,207 - Psyr_4477 0.75 -0.0 5,339,207 - Psyr_4477 0.75 -0.7 5,339,207 - Psyr_4477 0.75 +0.7 5,339,207 - Psyr_4477 0.75 +1.6 5,339,207 - Psyr_4477 0.75 +1.1 5,339,207 - Psyr_4477 0.75 -0.3 5,339,207 - Psyr_4477 0.75 +0.1 5,339,253 - Psyr_4477 0.77 +0.5 5,339,253 - Psyr_4477 0.77 -0.4 5,339,265 + Psyr_4477 0.78 -1.8 5,339,265 + Psyr_4477 0.78 +0.5 5,339,265 + Psyr_4477 0.78 +0.1 5,339,266 - Psyr_4477 0.78 +0.3 5,339,266 - Psyr_4477 0.78 -2.2 5,339,266 - Psyr_4477 0.78 +0.1 5,339,266 - Psyr_4477 0.78 +0.6 5,339,316 + Psyr_4477 0.80 +0.1 5,339,317 - Psyr_4477 0.80 +0.6 5,339,317 - Psyr_4477 0.80 -0.3 5,339,317 - Psyr_4477 0.80 -0.0 5,339,317 - Psyr_4477 0.80 +0.1 5,339,317 - Psyr_4477 0.80 -1.0 5,339,366 + Psyr_4477 0.82 +0.9 5,339,367 - Psyr_4477 0.82 +1.1 5,339,367 - Psyr_4477 0.82 +0.2 5,339,484 - Psyr_4477 0.87 -0.9 5,339,703 + -0.1 5,339,703 + -0.8 5,339,703 + +0.1 5,339,703 + +0.4 5,339,703 + -0.3 5,339,704 - +0.2 5,339,704 - -0.0 5,339,704 - +1.4 5,339,704 - +0.2 5,339,704 - +0.1 5,339,704 - -1.7 5,339,704 - +0.2 5,339,704 - +1.2 5,339,704 - -1.1 5,339,704 - +0.6 5,339,704 - -0.3 5,339,892 + -0.8 5,339,893 - -0.3 5,339,893 - +0.1 5,339,893 - -1.4 5,339,933 - -0.0 5,339,956 + +1.5 5,339,957 - +0.2 5,339,957 - -1.1 5,339,957 - +0.1 5,339,957 - +1.6 5,339,957 - +0.2 5,339,981 + -3.4 5,339,982 - -2.7 5,340,002 + +1.1 5,340,002 + -0.1 5,340,002 + -0.2 5,340,002 + -1.9 5,340,002 + -0.6 5,340,002 + +0.2 5,340,003 - -0.1 5,340,003 - -0.7 5,340,003 - +2.2 5,340,003 - +0.1 5,340,003 - +0.1 5,340,036 - -1.4 5,340,036 - -1.4 5,340,111 + +0.9 5,340,111 + -0.6 5,340,111 + +0.2 5,340,112 - +1.0 5,340,112 - -0.6 5,340,112 - +0.9 5,340,112 - +0.6 5,340,112 - +0.9 5,340,112 - +0.5 5,340,112 - +0.5 5,340,112 - +0.7 5,340,114 + +0.2 5,340,114 + -2.3 5,340,114 + -1.9 5,340,114 + -0.1 5,340,114 + +0.5 5,340,114 + -1.0 5,340,115 - -1.7 5,340,115 - -0.2 5,340,115 - -1.2 5,340,115 - +1.4 5,340,115 - -1.9 5,340,115 - +0.4 5,340,115 - +0.3 5,340,115 - +0.2 5,340,198 + Psyr_4478 0.15 +2.2 5,340,198 + Psyr_4478 0.15 +0.4 5,340,198 + Psyr_4478 0.15 +0.5 5,340,282 + Psyr_4478 0.25 +1.5 5,340,282 + Psyr_4478 0.25 +1.2 5,340,283 - Psyr_4478 0.25 -0.6 5,340,283 - Psyr_4478 0.25 -1.4 5,340,283 - Psyr_4478 0.25 +0.8 5,340,396 + Psyr_4478 0.39 -0.4 5,340,396 + Psyr_4478 0.39 -0.6 5,340,396 + Psyr_4478 0.39 +0.4 5,340,397 - Psyr_4478 0.39 -1.0 5,340,397 - Psyr_4478 0.39 -0.5 5,340,397 - Psyr_4478 0.39 +2.2 5,340,564 + Psyr_4478 0.60 -1.3 5,340,565 - Psyr_4478 0.60 +1.6 5,340,565 - Psyr_4478 0.60 -1.0
Or see this region's nucleotide sequence