Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4326 and Psyr_4327 are separated by 122 nucleotides Psyr_4327 and Psyr_4328 are separated by 161 nucleotides Psyr_4328 and Psyr_4329 are separated by 236 nucleotides Psyr_4329 and Psyr_4330 are separated by 9 nucleotides
Psyr_4326: Psyr_4326 - type III effector HopI1, at 5,178,780 to 5,179,790
_4326
Psyr_4327: Psyr_4327 - Endoribonuclease L-PSP, at 5,179,913 to 5,180,296
_4327
Psyr_4328: Psyr_4328 - Protein of unknown function DUF633, at 5,180,458 to 5,181,159
_4328
Psyr_4329: Psyr_4329 - conserved hypothetical protein, at 5,181,396 to 5,181,935
_4329
Psyr_4330: Psyr_4330 - conserved domain protein, at 5,181,945 to 5,182,838
_4330
Position (kb) 5180
5181
5182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5179.720 kb on - strand at 5179.720 kb on - strand at 5179.907 kb on + strand at 5180.025 kb on + strand, within Psyr_4327 at 5180.025 kb on + strand, within Psyr_4327 at 5180.025 kb on + strand, within Psyr_4327 at 5180.025 kb on + strand, within Psyr_4327 at 5180.025 kb on + strand, within Psyr_4327 at 5180.025 kb on + strand, within Psyr_4327 at 5180.026 kb on - strand, within Psyr_4327 at 5180.026 kb on - strand, within Psyr_4327 at 5180.026 kb on - strand, within Psyr_4327 at 5180.067 kb on + strand, within Psyr_4327 at 5180.067 kb on + strand, within Psyr_4327 at 5180.067 kb on + strand, within Psyr_4327 at 5180.067 kb on + strand, within Psyr_4327 at 5180.068 kb on - strand, within Psyr_4327 at 5180.068 kb on - strand, within Psyr_4327 at 5180.068 kb on - strand, within Psyr_4327 at 5180.068 kb on - strand, within Psyr_4327 at 5180.068 kb on - strand, within Psyr_4327 at 5180.404 kb on + strand at 5180.878 kb on + strand, within Psyr_4328 at 5180.962 kb on + strand, within Psyr_4328 at 5180.962 kb on + strand, within Psyr_4328 at 5180.963 kb on - strand, within Psyr_4328 at 5180.963 kb on - strand, within Psyr_4328 at 5180.963 kb on - strand, within Psyr_4328 at 5180.963 kb on - strand, within Psyr_4328 at 5180.963 kb on - strand, within Psyr_4328 at 5180.963 kb on - strand, within Psyr_4328 at 5180.980 kb on + strand, within Psyr_4328 at 5180.980 kb on + strand, within Psyr_4328 at 5180.981 kb on - strand, within Psyr_4328 at 5180.981 kb on - strand, within Psyr_4328 at 5181.217 kb on + strand at 5181.227 kb on + strand at 5181.227 kb on + strand at 5181.227 kb on + strand at 5181.227 kb on + strand at 5181.227 kb on + strand at 5181.227 kb on + strand at 5181.228 kb on - strand at 5181.228 kb on - strand at 5181.228 kb on - strand at 5181.228 kb on - strand at 5181.348 kb on + strand at 5181.368 kb on + strand at 5181.368 kb on + strand at 5181.368 kb on + strand at 5181.368 kb on + strand at 5181.368 kb on + strand at 5181.368 kb on + strand at 5181.368 kb on + strand at 5181.369 kb on - strand at 5181.369 kb on - strand at 5181.369 kb on - strand at 5181.369 kb on - strand at 5181.369 kb on - strand at 5181.822 kb on + strand, within Psyr_4329 at 5181.822 kb on + strand, within Psyr_4329 at 5181.822 kb on + strand, within Psyr_4329 at 5181.823 kb on - strand, within Psyr_4329 at 5181.841 kb on + strand, within Psyr_4329 at 5181.841 kb on + strand, within Psyr_4329 at 5181.841 kb on + strand, within Psyr_4329 at 5181.842 kb on - strand, within Psyr_4329 at 5181.842 kb on - strand, within Psyr_4329 at 5181.928 kb on + strand at 5181.928 kb on + strand at 5181.928 kb on + strand at 5181.928 kb on + strand at 5181.929 kb on - strand at 5181.929 kb on - strand at 5181.929 kb on - strand at 5181.929 kb on - strand at 5181.929 kb on - strand at 5181.929 kb on - strand at 5181.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,179,720 - -1.3 5,179,720 - +0.2 5,179,907 + -0.7 5,180,025 + Psyr_4327 0.29 +0.9 5,180,025 + Psyr_4327 0.29 +1.3 5,180,025 + Psyr_4327 0.29 +1.6 5,180,025 + Psyr_4327 0.29 +2.4 5,180,025 + Psyr_4327 0.29 -1.6 5,180,025 + Psyr_4327 0.29 -1.3 5,180,026 - Psyr_4327 0.29 +0.9 5,180,026 - Psyr_4327 0.29 +0.4 5,180,026 - Psyr_4327 0.29 +0.2 5,180,067 + Psyr_4327 0.40 +0.4 5,180,067 + Psyr_4327 0.40 +0.6 5,180,067 + Psyr_4327 0.40 +0.4 5,180,067 + Psyr_4327 0.40 -0.1 5,180,068 - Psyr_4327 0.40 -0.4 5,180,068 - Psyr_4327 0.40 -0.2 5,180,068 - Psyr_4327 0.40 +0.9 5,180,068 - Psyr_4327 0.40 -1.6 5,180,068 - Psyr_4327 0.40 -1.1 5,180,404 + +2.3 5,180,878 + Psyr_4328 0.60 -1.6 5,180,962 + Psyr_4328 0.72 +0.9 5,180,962 + Psyr_4328 0.72 -1.1 5,180,963 - Psyr_4328 0.72 -1.3 5,180,963 - Psyr_4328 0.72 -1.1 5,180,963 - Psyr_4328 0.72 -1.0 5,180,963 - Psyr_4328 0.72 +0.7 5,180,963 - Psyr_4328 0.72 -0.7 5,180,963 - Psyr_4328 0.72 +0.9 5,180,980 + Psyr_4328 0.74 -1.0 5,180,980 + Psyr_4328 0.74 +0.7 5,180,981 - Psyr_4328 0.75 -0.1 5,180,981 - Psyr_4328 0.75 -1.0 5,181,217 + -0.4 5,181,227 + +0.5 5,181,227 + -0.7 5,181,227 + -0.7 5,181,227 + -1.1 5,181,227 + -1.7 5,181,227 + -0.4 5,181,228 - -1.6 5,181,228 - +0.9 5,181,228 - -0.1 5,181,228 - +0.7 5,181,348 + -0.7 5,181,368 + -0.5 5,181,368 + -3.2 5,181,368 + -0.4 5,181,368 + -0.5 5,181,368 + -0.5 5,181,368 + +0.8 5,181,368 + -0.7 5,181,369 - +0.4 5,181,369 - +0.2 5,181,369 - -1.1 5,181,369 - -1.7 5,181,369 - +0.1 5,181,822 + Psyr_4329 0.79 -0.1 5,181,822 + Psyr_4329 0.79 +0.5 5,181,822 + Psyr_4329 0.79 +0.7 5,181,823 - Psyr_4329 0.79 -0.1 5,181,841 + Psyr_4329 0.82 +0.7 5,181,841 + Psyr_4329 0.82 +0.2 5,181,841 + Psyr_4329 0.82 -0.4 5,181,842 - Psyr_4329 0.83 -1.4 5,181,842 - Psyr_4329 0.83 -0.4 5,181,928 + +0.1 5,181,928 + +0.0 5,181,928 + -0.2 5,181,928 + +0.0 5,181,929 - -0.5 5,181,929 - +0.3 5,181,929 - +0.3 5,181,929 - -1.0 5,181,929 - -1.1 5,181,929 - +0.4 5,181,929 - +1.7
Or see this region's nucleotide sequence