Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4233 and Psyr_4234 are separated by 96 nucleotides Psyr_4234 and Psyr_4235 are separated by 257 nucleotides
Psyr_4233: Psyr_4233 - PhcA, at 5,041,254 to 5,042,810
_4233
Psyr_4234: Psyr_4234 - extracellular solute-binding protein, family 5, at 5,042,907 to 5,044,514
_4234
Psyr_4235: Psyr_4235 - extracellular solute-binding protein, family 5, at 5,044,772 to 5,046,400
_4235
Position (kb) 5042
5043
5044
5045 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5042.024 kb on + strand, within Psyr_4233 at 5042.025 kb on - strand, within Psyr_4233 at 5042.148 kb on - strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.266 kb on - strand, within Psyr_4233 at 5042.390 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.726 kb on + strand at 5042.808 kb on + strand at 5042.808 kb on + strand at 5042.808 kb on + strand at 5042.808 kb on + strand at 5042.808 kb on + strand at 5042.808 kb on + strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.835 kb on + strand at 5042.836 kb on - strand at 5042.836 kb on - strand at 5042.836 kb on - strand at 5042.855 kb on - strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5043.036 kb on + strand at 5043.036 kb on + strand at 5043.037 kb on - strand at 5043.037 kb on - strand at 5043.168 kb on + strand, within Psyr_4234 at 5043.168 kb on + strand, within Psyr_4234 at 5043.168 kb on + strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.321 kb on + strand, within Psyr_4234 at 5043.322 kb on - strand, within Psyr_4234 at 5043.344 kb on + strand, within Psyr_4234 at 5043.406 kb on + strand, within Psyr_4234 at 5043.466 kb on - strand, within Psyr_4234 at 5043.574 kb on - strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.790 kb on - strand, within Psyr_4234 at 5044.003 kb on + strand, within Psyr_4234 at 5044.004 kb on - strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.134 kb on + strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.135 kb on - strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.149 kb on + strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.150 kb on - strand, within Psyr_4234 at 5044.191 kb on + strand, within Psyr_4234 at 5044.243 kb on - strand, within Psyr_4234 at 5044.243 kb on - strand, within Psyr_4234 at 5044.272 kb on + strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.273 kb on - strand, within Psyr_4234 at 5044.296 kb on + strand, within Psyr_4234 at 5044.357 kb on - strand at 5044.357 kb on - strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.485 kb on + strand at 5044.486 kb on - strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.512 kb on + strand at 5044.513 kb on - strand at 5044.513 kb on - strand at 5044.606 kb on + strand at 5044.606 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.704 kb on + strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.705 kb on - strand at 5044.708 kb on + strand at 5044.742 kb on + strand at 5044.901 kb on + strand at 5044.902 kb on - strand at 5044.902 kb on - strand at 5044.902 kb on - strand at 5044.902 kb on - strand at 5044.902 kb on - strand at 5044.912 kb on + strand at 5044.912 kb on + strand at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.033 kb on + strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.034 kb on - strand, within Psyr_4235 at 5045.078 kb on + strand, within Psyr_4235 at 5045.457 kb on - strand, within Psyr_4235 at 5045.457 kb on - strand, within Psyr_4235
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 5,042,024 + Psyr_4233 0.49 +0.4 5,042,025 - Psyr_4233 0.50 -0.3 5,042,148 - Psyr_4233 0.57 -0.8 5,042,265 + Psyr_4233 0.65 -0.0 5,042,265 + Psyr_4233 0.65 -1.6 5,042,265 + Psyr_4233 0.65 -2.1 5,042,265 + Psyr_4233 0.65 +1.4 5,042,266 - Psyr_4233 0.65 +0.6 5,042,390 + Psyr_4233 0.73 +0.7 5,042,497 + Psyr_4233 0.80 +0.6 5,042,498 - Psyr_4233 0.80 +1.0 5,042,498 - Psyr_4233 0.80 -0.2 5,042,498 - Psyr_4233 0.80 +1.0 5,042,498 - Psyr_4233 0.80 -0.4 5,042,498 - Psyr_4233 0.80 +0.2 5,042,498 - Psyr_4233 0.80 -0.1 5,042,726 + +3.9 5,042,808 + +0.6 5,042,808 + -1.1 5,042,808 + +0.1 5,042,808 + +2.2 5,042,808 + -2.3 5,042,808 + +1.1 5,042,809 - -0.1 5,042,809 - -0.5 5,042,809 - +0.9 5,042,809 - -1.1 5,042,809 - -0.7 5,042,809 - -1.1 5,042,809 - +0.7 5,042,809 - -1.5 5,042,814 + -0.2 5,042,814 + +0.2 5,042,835 + +0.4 5,042,836 - -0.3 5,042,836 - -0.9 5,042,836 - +1.9 5,042,855 - -2.3 5,042,994 + -0.3 5,042,994 + -1.2 5,042,994 + -1.5 5,042,994 + +0.2 5,042,994 + -0.1 5,042,994 + -0.3 5,042,995 - -1.5 5,042,995 - -0.1 5,042,995 - -0.4 5,042,995 - +0.5 5,042,995 - -0.5 5,042,995 - -0.8 5,043,036 + +1.4 5,043,036 + +0.5 5,043,037 - +1.1 5,043,037 - +0.6 5,043,168 + Psyr_4234 0.16 +0.6 5,043,168 + Psyr_4234 0.16 +0.3 5,043,168 + Psyr_4234 0.16 -1.1 5,043,169 - Psyr_4234 0.16 -0.9 5,043,169 - Psyr_4234 0.16 +1.4 5,043,169 - Psyr_4234 0.16 -0.7 5,043,213 + Psyr_4234 0.19 -1.6 5,043,213 + Psyr_4234 0.19 +0.7 5,043,321 + Psyr_4234 0.26 +0.6 5,043,322 - Psyr_4234 0.26 +0.7 5,043,344 + Psyr_4234 0.27 -2.0 5,043,406 + Psyr_4234 0.31 +0.6 5,043,466 - Psyr_4234 0.35 -3.1 5,043,574 - Psyr_4234 0.41 +0.4 5,043,789 + Psyr_4234 0.55 +2.4 5,043,790 - Psyr_4234 0.55 -1.1 5,044,003 + Psyr_4234 0.68 -2.5 5,044,004 - Psyr_4234 0.68 -0.3 5,044,134 + Psyr_4234 0.76 +0.9 5,044,134 + Psyr_4234 0.76 +0.7 5,044,134 + Psyr_4234 0.76 -0.4 5,044,135 - Psyr_4234 0.76 -0.4 5,044,135 - Psyr_4234 0.76 -0.1 5,044,135 - Psyr_4234 0.76 -2.3 5,044,135 - Psyr_4234 0.76 +0.9 5,044,135 - Psyr_4234 0.76 -0.3 5,044,149 + Psyr_4234 0.77 -2.0 5,044,149 + Psyr_4234 0.77 -0.6 5,044,149 + Psyr_4234 0.77 +0.9 5,044,149 + Psyr_4234 0.77 -2.1 5,044,149 + Psyr_4234 0.77 -0.7 5,044,149 + Psyr_4234 0.77 +0.1 5,044,150 - Psyr_4234 0.77 -1.3 5,044,150 - Psyr_4234 0.77 -1.1 5,044,150 - Psyr_4234 0.77 +0.2 5,044,191 + Psyr_4234 0.80 +1.2 5,044,243 - Psyr_4234 0.83 -1.3 5,044,243 - Psyr_4234 0.83 +0.4 5,044,272 + Psyr_4234 0.85 -2.2 5,044,273 - Psyr_4234 0.85 +0.4 5,044,273 - Psyr_4234 0.85 +0.2 5,044,273 - Psyr_4234 0.85 -3.0 5,044,296 + Psyr_4234 0.86 -0.9 5,044,357 - -1.9 5,044,357 - +0.9 5,044,485 + -0.6 5,044,485 + +1.4 5,044,485 + +0.0 5,044,485 + +0.7 5,044,485 + +0.2 5,044,486 - -1.1 5,044,512 + +0.3 5,044,512 + -0.4 5,044,512 + -0.1 5,044,512 + -0.1 5,044,513 - +0.7 5,044,513 - +0.7 5,044,606 + +0.9 5,044,606 + -0.8 5,044,704 + -1.8 5,044,704 + -0.9 5,044,704 + +0.9 5,044,704 + +0.8 5,044,704 + -2.3 5,044,704 + +1.7 5,044,705 - +0.1 5,044,705 - -1.5 5,044,705 - -1.7 5,044,705 - -1.0 5,044,705 - +0.6 5,044,705 - -1.7 5,044,705 - +1.4 5,044,705 - +1.0 5,044,705 - -0.2 5,044,705 - -1.1 5,044,705 - -1.5 5,044,705 - +0.9 5,044,708 + -2.6 5,044,742 + -1.7 5,044,901 + +1.3 5,044,902 - +0.4 5,044,902 - +2.1 5,044,902 - -2.0 5,044,902 - -3.0 5,044,902 - -2.5 5,044,912 + -0.7 5,044,912 + -0.6 5,045,033 + Psyr_4235 0.16 +0.4 5,045,033 + Psyr_4235 0.16 +1.5 5,045,033 + Psyr_4235 0.16 +0.2 5,045,033 + Psyr_4235 0.16 +0.0 5,045,034 - Psyr_4235 0.16 +1.3 5,045,034 - Psyr_4235 0.16 -1.9 5,045,034 - Psyr_4235 0.16 -2.0 5,045,034 - Psyr_4235 0.16 -1.6 5,045,034 - Psyr_4235 0.16 +0.4 5,045,034 - Psyr_4235 0.16 -0.0 5,045,078 + Psyr_4235 0.19 +0.9 5,045,457 - Psyr_4235 0.42 +0.1 5,045,457 - Psyr_4235 0.42 -2.0
Or see this region's nucleotide sequence