Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3908

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3907 and Psyr_3908 are separated by 260 nucleotidesPsyr_3908 and Psyr_3909 are separated by 128 nucleotidesPsyr_3909 and Psyr_3910 are separated by 0 nucleotides Psyr_3907: Psyr_3907 - homodimeric glycerol 3-phosphate dehydrogenase (quinone), at 4,649,268 to 4,650,806 _3907 Psyr_3908: Psyr_3908 - L-aspartate-binding protein / L-glutamate-binding protein, at 4,651,067 to 4,652,068 _3908 Psyr_3909: Psyr_3909 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,197 to 4,652,943 _3909 Psyr_3910: Psyr_3910 - L-aspartate ABC transporter membrane protein / L-glutamate ABC transporter membrane protein, at 4,652,944 to 4,653,609 _3910 Position (kb) 4651 4652 4653Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4650.759 kb on + strandat 4650.856 kb on - strandat 4650.856 kb on - strandat 4650.856 kb on - strandat 4651.026 kb on + strandat 4651.026 kb on + strandat 4651.026 kb on + strandat 4651.027 kb on - strandat 4651.307 kb on + strand, within Psyr_3908at 4651.307 kb on + strand, within Psyr_3908at 4651.307 kb on + strand, within Psyr_3908at 4651.308 kb on - strand, within Psyr_3908at 4651.308 kb on - strand, within Psyr_3908at 4651.311 kb on + strand, within Psyr_3908at 4651.311 kb on + strand, within Psyr_3908at 4651.311 kb on + strand, within Psyr_3908at 4651.311 kb on + strand, within Psyr_3908at 4651.312 kb on - strand, within Psyr_3908at 4651.329 kb on + strand, within Psyr_3908at 4651.330 kb on - strand, within Psyr_3908at 4651.330 kb on - strand, within Psyr_3908at 4651.330 kb on - strand, within Psyr_3908at 4651.330 kb on - strand, within Psyr_3908at 4651.330 kb on - strand, within Psyr_3908at 4651.330 kb on - strand, within Psyr_3908at 4651.415 kb on + strand, within Psyr_3908at 4651.415 kb on + strand, within Psyr_3908at 4651.415 kb on + strand, within Psyr_3908at 4651.415 kb on + strand, within Psyr_3908at 4651.415 kb on + strand, within Psyr_3908at 4651.415 kb on + strand, within Psyr_3908at 4651.416 kb on - strand, within Psyr_3908at 4651.416 kb on - strand, within Psyr_3908at 4651.416 kb on - strand, within Psyr_3908at 4651.416 kb on - strand, within Psyr_3908at 4651.416 kb on - strand, within Psyr_3908at 4651.416 kb on - strand, within Psyr_3908at 4651.580 kb on + strand, within Psyr_3908at 4651.581 kb on - strand, within Psyr_3908at 4651.633 kb on + strand, within Psyr_3908at 4651.634 kb on - strand, within Psyr_3908at 4651.634 kb on - strand, within Psyr_3908at 4651.634 kb on - strand, within Psyr_3908at 4651.838 kb on + strand, within Psyr_3908at 4651.846 kb on - strand, within Psyr_3908at 4651.846 kb on - strand, within Psyr_3908at 4651.846 kb on - strand, within Psyr_3908at 4651.847 kb on + strand, within Psyr_3908at 4651.848 kb on - strand, within Psyr_3908at 4651.916 kb on + strand, within Psyr_3908at 4651.916 kb on + strand, within Psyr_3908at 4651.916 kb on + strand, within Psyr_3908at 4651.917 kb on - strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.943 kb on + strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4651.944 kb on - strand, within Psyr_3908at 4652.167 kb on - strandat 4652.177 kb on - strandat 4652.203 kb on + strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.222 kb on + strandat 4652.223 kb on - strandat 4652.257 kb on + strandat 4652.257 kb on + strandat 4652.257 kb on + strandat 4652.258 kb on - strandat 4652.258 kb on - strandat 4652.258 kb on - strandat 4652.258 kb on - strandat 4652.306 kb on + strand, within Psyr_3909at 4652.306 kb on + strand, within Psyr_3909at 4652.306 kb on + strand, within Psyr_3909at 4652.306 kb on + strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.307 kb on - strand, within Psyr_3909at 4652.397 kb on - strand, within Psyr_3909at 4652.397 kb on - strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.398 kb on + strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.399 kb on - strand, within Psyr_3909at 4652.449 kb on + strand, within Psyr_3909at 4652.449 kb on + strand, within Psyr_3909at 4652.450 kb on - strand, within Psyr_3909at 4652.494 kb on + strand, within Psyr_3909at 4652.494 kb on + strand, within Psyr_3909at 4652.538 kb on - strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.851 kb on + strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.852 kb on - strand, within Psyr_3909at 4652.941 kb on + strandat 4652.941 kb on + strandat 4652.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,650,759 + -4.0
4,650,856 - +0.1
4,650,856 - +0.3
4,650,856 - -0.0
4,651,026 + +0.8
4,651,026 + -2.3
4,651,026 + +0.7
4,651,027 - -0.3
4,651,307 + Psyr_3908 0.24 +0.9
4,651,307 + Psyr_3908 0.24 -2.3
4,651,307 + Psyr_3908 0.24 +3.2
4,651,308 - Psyr_3908 0.24 -0.5
4,651,308 - Psyr_3908 0.24 -2.3
4,651,311 + Psyr_3908 0.24 -1.3
4,651,311 + Psyr_3908 0.24 -0.3
4,651,311 + Psyr_3908 0.24 -1.1
4,651,311 + Psyr_3908 0.24 -0.9
4,651,312 - Psyr_3908 0.24 -0.6
4,651,329 + Psyr_3908 0.26 -0.7
4,651,330 - Psyr_3908 0.26 +1.1
4,651,330 - Psyr_3908 0.26 +1.5
4,651,330 - Psyr_3908 0.26 -0.4
4,651,330 - Psyr_3908 0.26 +0.6
4,651,330 - Psyr_3908 0.26 -1.8
4,651,330 - Psyr_3908 0.26 +1.8
4,651,415 + Psyr_3908 0.35 +0.5
4,651,415 + Psyr_3908 0.35 +0.9
4,651,415 + Psyr_3908 0.35 +1.1
4,651,415 + Psyr_3908 0.35 +1.6
4,651,415 + Psyr_3908 0.35 +0.6
4,651,415 + Psyr_3908 0.35 -0.2
4,651,416 - Psyr_3908 0.35 +0.4
4,651,416 - Psyr_3908 0.35 -2.3
4,651,416 - Psyr_3908 0.35 +0.1
4,651,416 - Psyr_3908 0.35 -0.3
4,651,416 - Psyr_3908 0.35 -0.9
4,651,416 - Psyr_3908 0.35 -0.0
4,651,580 + Psyr_3908 0.51 -2.9
4,651,581 - Psyr_3908 0.51 +0.2
4,651,633 + Psyr_3908 0.56 -0.3
4,651,634 - Psyr_3908 0.57 -0.8
4,651,634 - Psyr_3908 0.57 +0.4
4,651,634 - Psyr_3908 0.57 +0.6
4,651,838 + Psyr_3908 0.77 +1.7
4,651,846 - Psyr_3908 0.78 +0.3
4,651,846 - Psyr_3908 0.78 +0.8
4,651,846 - Psyr_3908 0.78 -0.7
4,651,847 + Psyr_3908 0.78 +1.0
4,651,848 - Psyr_3908 0.78 +0.7
4,651,916 + Psyr_3908 0.85 +0.7
4,651,916 + Psyr_3908 0.85 +1.0
4,651,916 + Psyr_3908 0.85 -1.3
4,651,917 - Psyr_3908 0.85 +1.4
4,651,943 + Psyr_3908 0.87 +1.7
4,651,943 + Psyr_3908 0.87 +0.3
4,651,943 + Psyr_3908 0.87 +0.0
4,651,943 + Psyr_3908 0.87 +0.2
4,651,943 + Psyr_3908 0.87 -0.1
4,651,943 + Psyr_3908 0.87 +3.2
4,651,943 + Psyr_3908 0.87 -0.4
4,651,943 + Psyr_3908 0.87 +2.4
4,651,944 - Psyr_3908 0.88 +1.1
4,651,944 - Psyr_3908 0.88 +1.5
4,651,944 - Psyr_3908 0.88 -0.6
4,651,944 - Psyr_3908 0.88 +0.4
4,652,167 - -0.4
4,652,177 - +0.1
4,652,203 + -0.6
4,652,204 - +1.3
4,652,204 - -0.2
4,652,204 - -2.1
4,652,204 - -0.0
4,652,204 - +0.8
4,652,222 + -1.6
4,652,223 - +1.2
4,652,257 + -2.0
4,652,257 + +0.2
4,652,257 + -0.7
4,652,258 - -2.1
4,652,258 - +1.9
4,652,258 - +0.5
4,652,258 - +0.0
4,652,306 + Psyr_3909 0.15 +0.4
4,652,306 + Psyr_3909 0.15 +1.1
4,652,306 + Psyr_3909 0.15 -1.2
4,652,306 + Psyr_3909 0.15 -0.3
4,652,307 - Psyr_3909 0.15 -0.3
4,652,307 - Psyr_3909 0.15 +0.6
4,652,307 - Psyr_3909 0.15 -1.7
4,652,307 - Psyr_3909 0.15 +1.9
4,652,397 - Psyr_3909 0.27 -1.0
4,652,397 - Psyr_3909 0.27 +1.6
4,652,398 + Psyr_3909 0.27 -1.7
4,652,398 + Psyr_3909 0.27 -0.3
4,652,398 + Psyr_3909 0.27 -1.1
4,652,398 + Psyr_3909 0.27 -2.1
4,652,398 + Psyr_3909 0.27 -0.2
4,652,398 + Psyr_3909 0.27 +2.7
4,652,398 + Psyr_3909 0.27 -0.9
4,652,398 + Psyr_3909 0.27 +1.7
4,652,399 - Psyr_3909 0.27 +0.1
4,652,399 - Psyr_3909 0.27 -1.1
4,652,399 - Psyr_3909 0.27 +1.2
4,652,399 - Psyr_3909 0.27 -4.5
4,652,399 - Psyr_3909 0.27 +1.0
4,652,399 - Psyr_3909 0.27 -0.1
4,652,399 - Psyr_3909 0.27 +0.8
4,652,399 - Psyr_3909 0.27 +0.9
4,652,449 + Psyr_3909 0.34 +0.7
4,652,449 + Psyr_3909 0.34 -2.9
4,652,450 - Psyr_3909 0.34 +2.3
4,652,494 + Psyr_3909 0.40 -0.7
4,652,494 + Psyr_3909 0.40 +0.4
4,652,538 - Psyr_3909 0.46 +0.3
4,652,851 + Psyr_3909 0.88 +0.4
4,652,851 + Psyr_3909 0.88 +0.1
4,652,851 + Psyr_3909 0.88 +0.0
4,652,851 + Psyr_3909 0.88 -0.0
4,652,851 + Psyr_3909 0.88 +0.1
4,652,851 + Psyr_3909 0.88 +0.7
4,652,851 + Psyr_3909 0.88 +0.3
4,652,851 + Psyr_3909 0.88 +0.3
4,652,852 - Psyr_3909 0.88 -0.3
4,652,852 - Psyr_3909 0.88 -0.8
4,652,852 - Psyr_3909 0.88 +0.7
4,652,852 - Psyr_3909 0.88 -0.9
4,652,941 + -0.3
4,652,941 + -3.2
4,652,942 - +2.3

Or see this region's nucleotide sequence