Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3847 and Psyr_3848 overlap by 4 nucleotides Psyr_3848 and Psyr_3849 are separated by 0 nucleotides Psyr_3849 and Psyr_3850 are separated by 256 nucleotides
Psyr_3847: Psyr_3847 - L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein, at 4,585,993 to 4,587,258
_3847
Psyr_3848: Psyr_3848 - L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein, at 4,587,255 to 4,588,022
_3848
Psyr_3849: Psyr_3849 - L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein / L-valine ABC transporter ATP-binding protein, at 4,588,023 to 4,588,724
_3849
Psyr_3850: Psyr_3850 - lipoprotein, putative, at 4,588,981 to 4,589,661
_3850
Position (kb) 4588
4589 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4587.269 kb on - strand at 4587.506 kb on + strand, within Psyr_3848 at 4587.507 kb on - strand, within Psyr_3848 at 4587.507 kb on - strand, within Psyr_3848 at 4587.507 kb on - strand, within Psyr_3848 at 4587.651 kb on + strand, within Psyr_3848 at 4587.720 kb on + strand, within Psyr_3848 at 4587.720 kb on + strand, within Psyr_3848 at 4587.721 kb on - strand, within Psyr_3848 at 4587.721 kb on - strand, within Psyr_3848 at 4588.006 kb on - strand at 4588.020 kb on + strand at 4588.020 kb on + strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.021 kb on - strand at 4588.054 kb on - strand at 4588.093 kb on + strand at 4588.093 kb on + strand at 4588.094 kb on - strand, within Psyr_3849 at 4588.094 kb on - strand, within Psyr_3849 at 4588.194 kb on - strand, within Psyr_3849 at 4588.200 kb on + strand, within Psyr_3849 at 4588.200 kb on + strand, within Psyr_3849 at 4588.200 kb on + strand, within Psyr_3849 at 4588.201 kb on - strand, within Psyr_3849 at 4588.201 kb on - strand, within Psyr_3849 at 4588.348 kb on - strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.632 kb on + strand, within Psyr_3849 at 4588.637 kb on - strand, within Psyr_3849 at 4588.711 kb on - strand at 4588.817 kb on + strand at 4588.817 kb on + strand at 4588.818 kb on - strand at 4588.862 kb on + strand at 4588.863 kb on - strand at 4588.863 kb on - strand at 4589.007 kb on - strand at 4589.007 kb on - strand at 4589.007 kb on - strand at 4589.007 kb on - strand at 4589.018 kb on + strand at 4589.019 kb on - strand at 4589.161 kb on + strand, within Psyr_3850 at 4589.311 kb on + strand, within Psyr_3850 at 4589.464 kb on + strand, within Psyr_3850 at 4589.464 kb on + strand, within Psyr_3850 at 4589.534 kb on + strand, within Psyr_3850 at 4589.534 kb on + strand, within Psyr_3850 at 4589.535 kb on - strand, within Psyr_3850 at 4589.697 kb on - strand at 4589.698 kb on + strand at 4589.698 kb on + strand at 4589.698 kb on + strand at 4589.699 kb on - strand at 4589.699 kb on - strand at 4589.699 kb on - strand at 4589.714 kb on + strand at 4589.715 kb on - strand at 4589.715 kb on - strand at 4589.715 kb on - strand at 4589.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 4,587,269 - -0.4 4,587,506 + Psyr_3848 0.33 +0.6 4,587,507 - Psyr_3848 0.33 -2.3 4,587,507 - Psyr_3848 0.33 -1.6 4,587,507 - Psyr_3848 0.33 -2.6 4,587,651 + Psyr_3848 0.52 +1.3 4,587,720 + Psyr_3848 0.61 +0.9 4,587,720 + Psyr_3848 0.61 -2.6 4,587,721 - Psyr_3848 0.61 -2.1 4,587,721 - Psyr_3848 0.61 -1.1 4,588,006 - -1.3 4,588,020 + +0.5 4,588,020 + +1.4 4,588,021 - +2.3 4,588,021 - -0.6 4,588,021 - -0.0 4,588,021 - +1.3 4,588,021 - +1.1 4,588,021 - +1.1 4,588,054 - +0.4 4,588,093 + +2.2 4,588,093 + -0.3 4,588,094 - Psyr_3849 0.10 -2.2 4,588,094 - Psyr_3849 0.10 -0.7 4,588,194 - Psyr_3849 0.24 +1.8 4,588,200 + Psyr_3849 0.25 -0.7 4,588,200 + Psyr_3849 0.25 -1.2 4,588,200 + Psyr_3849 0.25 +0.3 4,588,201 - Psyr_3849 0.25 +0.6 4,588,201 - Psyr_3849 0.25 +1.0 4,588,348 - Psyr_3849 0.46 +1.0 4,588,632 + Psyr_3849 0.87 +0.3 4,588,632 + Psyr_3849 0.87 +0.5 4,588,632 + Psyr_3849 0.87 +1.4 4,588,632 + Psyr_3849 0.87 +0.4 4,588,637 - Psyr_3849 0.87 +1.9 4,588,711 - +0.6 4,588,817 + -0.9 4,588,817 + +0.0 4,588,818 - -0.9 4,588,862 + -0.5 4,588,863 - -0.6 4,588,863 - -0.1 4,589,007 - -1.5 4,589,007 - -0.2 4,589,007 - +0.3 4,589,007 - -1.6 4,589,018 + -1.8 4,589,019 - -0.0 4,589,161 + Psyr_3850 0.26 -1.7 4,589,311 + Psyr_3850 0.48 -1.0 4,589,464 + Psyr_3850 0.71 -0.1 4,589,464 + Psyr_3850 0.71 +1.1 4,589,534 + Psyr_3850 0.81 -0.6 4,589,534 + Psyr_3850 0.81 -1.2 4,589,535 - Psyr_3850 0.81 -0.2 4,589,697 - -0.9 4,589,698 + +1.2 4,589,698 + +1.4 4,589,698 + +0.1 4,589,699 - -2.0 4,589,699 - -0.9 4,589,699 - +0.7 4,589,714 + -0.8 4,589,715 - -1.6 4,589,715 - -0.2 4,589,715 - +0.4 4,589,715 - +0.6
Or see this region's nucleotide sequence