Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3754

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3753 and Psyr_3754 are separated by 33 nucleotidesPsyr_3754 and Psyr_3755 are separated by 313 nucleotidesPsyr_3755 and Psyr_3756 are separated by 119 nucleotides Psyr_3753: Psyr_3753 - Short-chain dehydrogenase/reductase SDR, at 4,470,616 to 4,471,500 _3753 Psyr_3754: Psyr_3754 - conserved hypothetical protein, at 4,471,534 to 4,471,914 _3754 Psyr_3755: Psyr_3755 - conserved hypothetical protein, at 4,472,228 to 4,472,386 _3755 Psyr_3756: Psyr_3756 - Na+/solute symporter, at 4,472,506 to 4,474,164 _3756 Position (kb) 4471 4472Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.677 kb on + strandat 4470.678 kb on - strandat 4470.678 kb on - strandat 4470.983 kb on + strand, within Psyr_3753at 4470.983 kb on + strand, within Psyr_3753at 4470.983 kb on + strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4470.984 kb on - strand, within Psyr_3753at 4471.062 kb on + strand, within Psyr_3753at 4471.063 kb on - strand, within Psyr_3753at 4471.063 kb on - strand, within Psyr_3753at 4471.244 kb on + strand, within Psyr_3753at 4471.294 kb on + strand, within Psyr_3753at 4471.294 kb on + strand, within Psyr_3753at 4471.294 kb on + strand, within Psyr_3753at 4471.295 kb on - strand, within Psyr_3753at 4471.295 kb on - strand, within Psyr_3753at 4471.295 kb on - strand, within Psyr_3753at 4471.410 kb on + strand, within Psyr_3753at 4471.410 kb on + strand, within Psyr_3753at 4471.469 kb on + strandat 4471.469 kb on + strandat 4471.469 kb on + strandat 4471.470 kb on - strandat 4471.470 kb on - strandat 4471.470 kb on - strandat 4471.559 kb on + strandat 4471.559 kb on + strandat 4471.580 kb on + strand, within Psyr_3754at 4471.580 kb on + strand, within Psyr_3754at 4471.580 kb on + strand, within Psyr_3754at 4471.580 kb on + strand, within Psyr_3754at 4471.627 kb on + strand, within Psyr_3754at 4471.670 kb on + strand, within Psyr_3754at 4471.670 kb on + strand, within Psyr_3754at 4471.695 kb on - strand, within Psyr_3754at 4471.751 kb on + strand, within Psyr_3754at 4471.751 kb on + strand, within Psyr_3754at 4471.752 kb on - strand, within Psyr_3754at 4471.828 kb on + strand, within Psyr_3754at 4471.867 kb on + strand, within Psyr_3754at 4471.867 kb on + strand, within Psyr_3754at 4471.867 kb on + strand, within Psyr_3754at 4471.868 kb on - strand, within Psyr_3754at 4471.868 kb on - strand, within Psyr_3754at 4472.196 kb on + strandat 4472.201 kb on - strandat 4472.201 kb on - strandat 4472.207 kb on - strandat 4472.207 kb on - strandat 4472.211 kb on + strandat 4472.212 kb on - strandat 4472.248 kb on + strand, within Psyr_3755at 4472.272 kb on - strand, within Psyr_3755at 4472.315 kb on + strand, within Psyr_3755at 4472.382 kb on + strandat 4472.382 kb on + strandat 4472.382 kb on + strandat 4472.382 kb on + strandat 4472.383 kb on - strandat 4472.411 kb on + strandat 4472.412 kb on - strandat 4472.412 kb on - strandat 4472.412 kb on - strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.413 kb on + strandat 4472.414 kb on - strandat 4472.414 kb on - strandat 4472.414 kb on - strandat 4472.421 kb on - strandat 4472.507 kb on + strandat 4472.508 kb on - strandat 4472.508 kb on - strandat 4472.565 kb on - strandat 4472.625 kb on + strandat 4472.625 kb on + strandat 4472.630 kb on - strandat 4472.630 kb on - strandat 4472.801 kb on + strand, within Psyr_3756at 4472.801 kb on + strand, within Psyr_3756at 4472.801 kb on + strand, within Psyr_3756at 4472.801 kb on + strand, within Psyr_3756at 4472.802 kb on - strand, within Psyr_3756

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,470,677 + +0.5
4,470,677 + +0.3
4,470,677 + -2.4
4,470,677 + -1.5
4,470,678 - +0.5
4,470,678 - -1.3
4,470,983 + Psyr_3753 0.41 -1.1
4,470,983 + Psyr_3753 0.41 -0.4
4,470,983 + Psyr_3753 0.41 +1.7
4,470,984 - Psyr_3753 0.42 -0.1
4,470,984 - Psyr_3753 0.42 +0.1
4,470,984 - Psyr_3753 0.42 +0.6
4,470,984 - Psyr_3753 0.42 +1.7
4,471,062 + Psyr_3753 0.50 +1.0
4,471,063 - Psyr_3753 0.51 -0.0
4,471,063 - Psyr_3753 0.51 -0.3
4,471,244 + Psyr_3753 0.71 +1.3
4,471,294 + Psyr_3753 0.77 +0.1
4,471,294 + Psyr_3753 0.77 +0.3
4,471,294 + Psyr_3753 0.77 +0.7
4,471,295 - Psyr_3753 0.77 -0.7
4,471,295 - Psyr_3753 0.77 -1.7
4,471,295 - Psyr_3753 0.77 -1.0
4,471,410 + Psyr_3753 0.90 +0.7
4,471,410 + Psyr_3753 0.90 +0.7
4,471,469 + +0.1
4,471,469 + -0.9
4,471,469 + +0.7
4,471,470 - -0.0
4,471,470 - -0.9
4,471,470 - -1.0
4,471,559 + +1.3
4,471,559 + +0.9
4,471,580 + Psyr_3754 0.12 -0.4
4,471,580 + Psyr_3754 0.12 -0.7
4,471,580 + Psyr_3754 0.12 +1.1
4,471,580 + Psyr_3754 0.12 -0.9
4,471,627 + Psyr_3754 0.24 +0.3
4,471,670 + Psyr_3754 0.36 -1.2
4,471,670 + Psyr_3754 0.36 -0.1
4,471,695 - Psyr_3754 0.42 +0.6
4,471,751 + Psyr_3754 0.57 -1.0
4,471,751 + Psyr_3754 0.57 +0.8
4,471,752 - Psyr_3754 0.57 -2.1
4,471,828 + Psyr_3754 0.77 -0.4
4,471,867 + Psyr_3754 0.87 +0.4
4,471,867 + Psyr_3754 0.87 +0.5
4,471,867 + Psyr_3754 0.87 -0.8
4,471,868 - Psyr_3754 0.88 -0.3
4,471,868 - Psyr_3754 0.88 -1.1
4,472,196 + -0.2
4,472,201 - -0.4
4,472,201 - -0.3
4,472,207 - -1.2
4,472,207 - -1.8
4,472,211 + +0.8
4,472,212 - +0.2
4,472,248 + Psyr_3755 0.13 -1.6
4,472,272 - Psyr_3755 0.28 -0.3
4,472,315 + Psyr_3755 0.55 -1.1
4,472,382 + +0.2
4,472,382 + -0.9
4,472,382 + -0.1
4,472,382 + +1.5
4,472,383 - +0.3
4,472,411 + -0.5
4,472,412 - -1.3
4,472,412 - +0.3
4,472,412 - +0.3
4,472,413 + -0.5
4,472,413 + -0.0
4,472,413 + +2.3
4,472,413 + +1.2
4,472,413 + -0.6
4,472,413 + -0.2
4,472,414 - +1.1
4,472,414 - -0.5
4,472,414 - -3.4
4,472,421 - -1.0
4,472,507 + -0.4
4,472,508 - +1.3
4,472,508 - -0.3
4,472,565 - +1.2
4,472,625 + -0.7
4,472,625 + -0.3
4,472,630 - -0.1
4,472,630 - +0.9
4,472,801 + Psyr_3756 0.18 -0.2
4,472,801 + Psyr_3756 0.18 +0.2
4,472,801 + Psyr_3756 0.18 +0.5
4,472,801 + Psyr_3756 0.18 +0.9
4,472,802 - Psyr_3756 0.18 +0.7

Or see this region's nucleotide sequence