Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3704

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3702 and Psyr_3703 overlap by 4 nucleotidesPsyr_3703 and Psyr_3704 are separated by 99 nucleotidesPsyr_3704 and Psyr_3705 are separated by 6 nucleotides Psyr_3702: Psyr_3702 - Arsenate reductase, at 4,389,992 to 4,390,345 _3702 Psyr_3703: Psyr_3703 - Flavodoxin/nitric oxide synthase, at 4,390,342 to 4,390,947 _3703 Psyr_3704: Psyr_3704 - conserved hypothetical protein, at 4,391,047 to 4,391,718 _3704 Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549 _3705 Position (kb) 4391 4392Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4390.187 kb on + strand, within Psyr_3702at 4390.187 kb on + strand, within Psyr_3702at 4390.187 kb on + strand, within Psyr_3702at 4390.188 kb on - strand, within Psyr_3702at 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.354 kb on + strandat 4390.355 kb on - strandat 4390.355 kb on - strandat 4390.355 kb on - strandat 4390.355 kb on - strandat 4390.355 kb on - strandat 4390.369 kb on + strandat 4390.369 kb on + strandat 4390.370 kb on - strandat 4390.370 kb on - strandat 4390.372 kb on + strandat 4390.373 kb on - strandat 4390.522 kb on + strand, within Psyr_3703at 4390.609 kb on + strand, within Psyr_3703at 4390.609 kb on + strand, within Psyr_3703at 4390.609 kb on + strand, within Psyr_3703at 4390.610 kb on - strand, within Psyr_3703at 4390.610 kb on - strand, within Psyr_3703at 4390.610 kb on - strand, within Psyr_3703at 4390.677 kb on + strand, within Psyr_3703at 4391.056 kb on + strandat 4391.056 kb on + strandat 4391.074 kb on + strandat 4391.074 kb on + strandat 4391.178 kb on + strand, within Psyr_3704at 4391.179 kb on - strand, within Psyr_3704at 4391.179 kb on - strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.467 kb on + strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.468 kb on - strand, within Psyr_3704at 4391.731 kb on - strandat 4391.975 kb on + strand, within Psyr_3705at 4391.976 kb on - strand, within Psyr_3705at 4391.976 kb on - strand, within Psyr_3705at 4392.002 kb on + strand, within Psyr_3705at 4392.170 kb on + strand, within Psyr_3705at 4392.170 kb on + strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.248 kb on + strand, within Psyr_3705at 4392.248 kb on + strand, within Psyr_3705at 4392.248 kb on + strandat 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.297 kb on - strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.551 kb on + strandat 4392.551 kb on + strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.617 kb on + strandat 4392.618 kb on - strandat 4392.618 kb on - strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.701 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,390,187 + Psyr_3702 0.55 -0.5
4,390,187 + Psyr_3702 0.55 -0.9
4,390,187 + Psyr_3702 0.55 +1.2
4,390,188 - Psyr_3702 0.55 +0.7
4,390,354 + -1.2
4,390,354 + -2.3
4,390,354 + +0.3
4,390,354 + +0.7
4,390,354 + -2.8
4,390,354 + +0.2
4,390,354 + +1.0
4,390,354 + +0.6
4,390,354 + -1.2
4,390,355 - +0.7
4,390,355 - +0.1
4,390,355 - +0.4
4,390,355 - +1.7
4,390,355 - +0.7
4,390,369 + -0.2
4,390,369 + +0.7
4,390,370 - +3.6
4,390,370 - +0.3
4,390,372 + +0.6
4,390,373 - -0.3
4,390,522 + Psyr_3703 0.30 +2.1
4,390,609 + Psyr_3703 0.44 +0.2
4,390,609 + Psyr_3703 0.44 -2.8
4,390,609 + Psyr_3703 0.44 -1.4
4,390,610 - Psyr_3703 0.44 -1.5
4,390,610 - Psyr_3703 0.44 -2.1
4,390,610 - Psyr_3703 0.44 -2.5
4,390,677 + Psyr_3703 0.55 -2.0
4,391,056 + +1.5
4,391,056 + +0.4
4,391,074 + +0.2
4,391,074 + +0.7
4,391,178 + Psyr_3704 0.19 +0.2
4,391,179 - Psyr_3704 0.20 -0.3
4,391,179 - Psyr_3704 0.20 -0.1
4,391,467 + Psyr_3704 0.62 +1.3
4,391,467 + Psyr_3704 0.62 +0.8
4,391,467 + Psyr_3704 0.62 +2.2
4,391,467 + Psyr_3704 0.62 -0.2
4,391,467 + Psyr_3704 0.62 +0.1
4,391,467 + Psyr_3704 0.62 +0.0
4,391,468 - Psyr_3704 0.63 -0.3
4,391,468 - Psyr_3704 0.63 +0.9
4,391,468 - Psyr_3704 0.63 +1.8
4,391,468 - Psyr_3704 0.63 +0.1
4,391,468 - Psyr_3704 0.63 +1.8
4,391,731 - -1.0
4,391,975 + Psyr_3705 0.30 +0.0
4,391,976 - Psyr_3705 0.30 -0.1
4,391,976 - Psyr_3705 0.30 +2.3
4,392,002 + Psyr_3705 0.34 -0.7
4,392,170 + Psyr_3705 0.54 +0.8
4,392,170 + Psyr_3705 0.54 -2.1
4,392,171 - Psyr_3705 0.54 -2.1
4,392,171 - Psyr_3705 0.54 +2.7
4,392,171 - Psyr_3705 0.54 -1.5
4,392,171 - Psyr_3705 0.54 -1.1
4,392,248 + Psyr_3705 0.63 +1.5
4,392,248 + Psyr_3705 0.63 +1.1
4,392,248 + +1.2
4,392,249 - Psyr_3705 0.64 +1.0
4,392,249 - Psyr_3705 0.64 -0.9
4,392,249 - Psyr_3705 0.64 +2.2
4,392,249 - Psyr_3705 0.64 +0.7
4,392,297 - Psyr_3705 0.69 -0.3
4,392,413 + Psyr_3705 0.83 +0.4
4,392,413 + Psyr_3705 0.83 -0.5
4,392,413 + Psyr_3705 0.83 +0.8
4,392,413 + Psyr_3705 0.83 -4.2
4,392,413 + Psyr_3705 0.83 -2.3
4,392,413 + Psyr_3705 0.83 +0.9
4,392,414 - Psyr_3705 0.84 +1.1
4,392,414 - Psyr_3705 0.84 +1.7
4,392,414 - Psyr_3705 0.84 +0.0
4,392,414 - Psyr_3705 0.84 +1.5
4,392,414 - Psyr_3705 0.84 -2.7
4,392,414 - Psyr_3705 0.84 +0.5
4,392,414 - Psyr_3705 0.84 -1.0
4,392,551 + -2.4
4,392,551 + -2.4
4,392,552 - -0.2
4,392,552 - +0.2
4,392,552 - -1.8
4,392,552 - -0.1
4,392,552 - -0.3
4,392,617 + -0.4
4,392,618 - +1.2
4,392,618 - +0.4
4,392,621 + -1.0
4,392,621 + -0.4
4,392,621 + -0.3
4,392,621 + +0.6
4,392,621 + -1.3
4,392,622 - -1.1
4,392,622 - -1.9
4,392,622 - +1.0
4,392,622 - -0.7
4,392,622 - -1.3
4,392,701 - +0.1
4,392,717 - +0.1
4,392,717 - -2.1
4,392,717 - +2.2
4,392,717 - +0.5
4,392,717 - +0.5
4,392,717 - -1.8

Or see this region's nucleotide sequence