Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3581 and Psyr_3582 are separated by 184 nucleotides Psyr_3582 and Psyr_3583 are separated by 304 nucleotides Psyr_3583 and Psyr_3584 are separated by 15 nucleotides Psyr_3584 and Psyr_3585 overlap by 1 nucleotides
Psyr_3581: Psyr_3581 - ribosomal large subunit pseudouridine synthase B, at 4,264,625 to 4,265,854
_3581
Psyr_3582: Psyr_3582 - Protein of unknown function DUF1289, at 4,266,039 to 4,266,230
_3582
Psyr_3583: Psyr_3583 - condensin subunit ScpB, at 4,266,535 to 4,267,302
_3583
Psyr_3584: Psyr_3584 - condensin subunit ScpA, at 4,267,318 to 4,268,136
_3584
Psyr_3585: Psyr_3585 - Sua5/YciO/YrdC/YwlC, at 4,268,136 to 4,268,804
_3585
Position (kb) 4266
4267
4268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.604 kb on + strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.605 kb on - strand, within Psyr_3581 at 4265.944 kb on - strand at 4265.944 kb on - strand at 4265.944 kb on - strand at 4265.944 kb on - strand at 4265.944 kb on - strand at 4266.355 kb on + strand at 4266.355 kb on + strand at 4266.356 kb on - strand at 4266.383 kb on + strand at 4266.383 kb on + strand at 4266.384 kb on - strand at 4266.384 kb on - strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.387 kb on + strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.388 kb on - strand at 4266.444 kb on - strand at 4266.498 kb on - strand at 4266.498 kb on - strand at 4266.498 kb on - strand at 4266.529 kb on - strand at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.214 kb on + strand, within Psyr_3583 at 4267.215 kb on - strand, within Psyr_3583 at 4267.215 kb on - strand, within Psyr_3583 at 4267.313 kb on + strand at 4267.313 kb on + strand at 4267.314 kb on - strand at 4267.319 kb on + strand at 4267.319 kb on + strand at 4267.320 kb on - strand at 4267.731 kb on - strand, within Psyr_3584 at 4267.731 kb on - strand, within Psyr_3584 at 4267.895 kb on + strand, within Psyr_3584 at 4267.895 kb on + strand, within Psyr_3584 at 4267.896 kb on - strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.904 kb on + strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4267.905 kb on - strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.033 kb on + strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.034 kb on - strand, within Psyr_3584 at 4268.070 kb on - strand at 4268.231 kb on + strand, within Psyr_3585 at 4268.231 kb on + strand, within Psyr_3585 at 4268.294 kb on - strand, within Psyr_3585
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 4,265,604 + Psyr_3581 0.80 -0.4 4,265,604 + Psyr_3581 0.80 -1.5 4,265,604 + Psyr_3581 0.80 -1.7 4,265,604 + Psyr_3581 0.80 -0.2 4,265,604 + Psyr_3581 0.80 -1.0 4,265,604 + Psyr_3581 0.80 -2.4 4,265,604 + Psyr_3581 0.80 -2.7 4,265,604 + Psyr_3581 0.80 -1.7 4,265,604 + Psyr_3581 0.80 -1.0 4,265,605 - Psyr_3581 0.80 -2.5 4,265,605 - Psyr_3581 0.80 -3.5 4,265,605 - Psyr_3581 0.80 -1.4 4,265,605 - Psyr_3581 0.80 -2.0 4,265,605 - Psyr_3581 0.80 -1.3 4,265,605 - Psyr_3581 0.80 -0.8 4,265,605 - Psyr_3581 0.80 -3.3 4,265,605 - Psyr_3581 0.80 -2.7 4,265,605 - Psyr_3581 0.80 -1.4 4,265,944 - -1.4 4,265,944 - +0.3 4,265,944 - +0.3 4,265,944 - +0.1 4,265,944 - -1.4 4,266,355 + +1.2 4,266,355 + -0.5 4,266,356 - +1.6 4,266,383 + -0.4 4,266,383 + +1.9 4,266,384 - -0.9 4,266,384 - -2.4 4,266,387 + +0.6 4,266,387 + +2.0 4,266,387 + +0.8 4,266,387 + +2.4 4,266,387 + -2.0 4,266,387 + +0.2 4,266,387 + +0.7 4,266,387 + +0.6 4,266,387 + -0.9 4,266,387 + +2.2 4,266,388 - -1.0 4,266,388 - +1.0 4,266,388 - +1.0 4,266,388 - +0.8 4,266,388 - +1.0 4,266,388 - +1.5 4,266,388 - +0.5 4,266,388 - -0.6 4,266,388 - +3.0 4,266,388 - +0.1 4,266,388 - +0.7 4,266,388 - -0.6 4,266,388 - +0.4 4,266,388 - -2.2 4,266,388 - +1.5 4,266,388 - +1.5 4,266,388 - -0.5 4,266,388 - +0.4 4,266,388 - -2.5 4,266,388 - -0.7 4,266,388 - -1.8 4,266,444 - -0.5 4,266,498 - +0.6 4,266,498 - +1.0 4,266,498 - -0.2 4,266,529 - -0.3 4,267,214 + Psyr_3583 0.88 +0.9 4,267,214 + Psyr_3583 0.88 -0.0 4,267,214 + Psyr_3583 0.88 -0.5 4,267,214 + Psyr_3583 0.88 +0.2 4,267,214 + Psyr_3583 0.88 +0.3 4,267,215 - Psyr_3583 0.89 -1.0 4,267,215 - Psyr_3583 0.89 -0.0 4,267,313 + -1.4 4,267,313 + +2.1 4,267,314 - +2.2 4,267,319 + +0.5 4,267,319 + +1.0 4,267,320 - +2.4 4,267,731 - Psyr_3584 0.50 -0.7 4,267,731 - Psyr_3584 0.50 +1.1 4,267,895 + Psyr_3584 0.70 -0.5 4,267,895 + Psyr_3584 0.70 +0.7 4,267,896 - Psyr_3584 0.71 +0.3 4,267,904 + Psyr_3584 0.72 +0.8 4,267,904 + Psyr_3584 0.72 -0.4 4,267,904 + Psyr_3584 0.72 -1.4 4,267,904 + Psyr_3584 0.72 +0.9 4,267,904 + Psyr_3584 0.72 -1.6 4,267,904 + Psyr_3584 0.72 +0.9 4,267,904 + Psyr_3584 0.72 +0.0 4,267,904 + Psyr_3584 0.72 +1.8 4,267,905 - Psyr_3584 0.72 +0.6 4,267,905 - Psyr_3584 0.72 -2.8 4,267,905 - Psyr_3584 0.72 -1.5 4,267,905 - Psyr_3584 0.72 -0.8 4,267,905 - Psyr_3584 0.72 -0.1 4,268,033 + Psyr_3584 0.87 -0.1 4,268,033 + Psyr_3584 0.87 +0.5 4,268,033 + Psyr_3584 0.87 +0.2 4,268,033 + Psyr_3584 0.87 +1.1 4,268,033 + Psyr_3584 0.87 -0.2 4,268,033 + Psyr_3584 0.87 +1.1 4,268,033 + Psyr_3584 0.87 +1.3 4,268,034 - Psyr_3584 0.87 -1.0 4,268,034 - Psyr_3584 0.87 -0.7 4,268,034 - Psyr_3584 0.87 +3.0 4,268,034 - Psyr_3584 0.87 +0.5 4,268,034 - Psyr_3584 0.87 +1.8 4,268,070 - +1.0 4,268,231 + Psyr_3585 0.14 +1.0 4,268,231 + Psyr_3585 0.14 -0.1 4,268,294 - Psyr_3585 0.24 -2.0
Or see this region's nucleotide sequence