Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3581

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3580 and Psyr_3581 are separated by 271 nucleotidesPsyr_3581 and Psyr_3582 are separated by 184 nucleotidesPsyr_3582 and Psyr_3583 are separated by 304 nucleotides Psyr_3580: Psyr_3580 - aromatic amino acid:proton symporter, AAT family, at 4,262,944 to 4,264,353 _3580 Psyr_3581: Psyr_3581 - ribosomal large subunit pseudouridine synthase B, at 4,264,625 to 4,265,854 _3581 Psyr_3582: Psyr_3582 - Protein of unknown function DUF1289, at 4,266,039 to 4,266,230 _3582 Psyr_3583: Psyr_3583 - condensin subunit ScpB, at 4,266,535 to 4,267,302 _3583 Position (kb) 4264 4265 4266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4263.626 kb on + strand, within Psyr_3580at 4263.626 kb on + strand, within Psyr_3580at 4263.627 kb on - strand, within Psyr_3580at 4263.656 kb on - strand, within Psyr_3580at 4263.656 kb on - strand, within Psyr_3580at 4263.836 kb on + strand, within Psyr_3580at 4263.836 kb on + strand, within Psyr_3580at 4263.836 kb on + strand, within Psyr_3580at 4263.836 kb on + strand, within Psyr_3580at 4263.836 kb on + strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4263.837 kb on - strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.004 kb on + strand, within Psyr_3580at 4264.005 kb on - strand, within Psyr_3580at 4264.005 kb on - strand, within Psyr_3580at 4264.005 kb on - strand, within Psyr_3580at 4264.005 kb on - strand, within Psyr_3580at 4264.005 kb on - strand, within Psyr_3580at 4264.046 kb on + strand, within Psyr_3580at 4264.046 kb on + strand, within Psyr_3580at 4264.046 kb on + strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.047 kb on - strand, within Psyr_3580at 4264.097 kb on + strand, within Psyr_3580at 4264.098 kb on - strand, within Psyr_3580at 4264.098 kb on - strand, within Psyr_3580at 4264.098 kb on - strand, within Psyr_3580at 4264.391 kb on + strandat 4264.391 kb on + strandat 4264.391 kb on + strandat 4264.392 kb on - strandat 4264.392 kb on - strandat 4264.491 kb on + strandat 4264.491 kb on + strandat 4264.491 kb on + strandat 4264.491 kb on + strandat 4264.492 kb on - strandat 4265.228 kb on + strand, within Psyr_3581at 4265.228 kb on + strand, within Psyr_3581at 4265.228 kb on + strand, within Psyr_3581at 4265.229 kb on - strand, within Psyr_3581at 4265.229 kb on - strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.604 kb on + strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.605 kb on - strand, within Psyr_3581at 4265.944 kb on - strandat 4265.944 kb on - strandat 4265.944 kb on - strandat 4265.944 kb on - strandat 4265.944 kb on - strandat 4266.355 kb on + strandat 4266.355 kb on + strandat 4266.356 kb on - strandat 4266.383 kb on + strandat 4266.383 kb on + strandat 4266.384 kb on - strandat 4266.384 kb on - strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.387 kb on + strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.388 kb on - strandat 4266.444 kb on - strandat 4266.498 kb on - strandat 4266.498 kb on - strandat 4266.498 kb on - strandat 4266.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,263,626 + Psyr_3580 0.48 +0.6
4,263,626 + Psyr_3580 0.48 -0.4
4,263,627 - Psyr_3580 0.48 +0.9
4,263,656 - Psyr_3580 0.50 -0.1
4,263,656 - Psyr_3580 0.50 +1.2
4,263,836 + Psyr_3580 0.63 +1.0
4,263,836 + Psyr_3580 0.63 +2.0
4,263,836 + Psyr_3580 0.63 +0.6
4,263,836 + Psyr_3580 0.63 +1.0
4,263,836 + Psyr_3580 0.63 +0.6
4,263,837 - Psyr_3580 0.63 +1.0
4,263,837 - Psyr_3580 0.63 -1.0
4,263,837 - Psyr_3580 0.63 -2.0
4,263,837 - Psyr_3580 0.63 +0.5
4,263,837 - Psyr_3580 0.63 +0.2
4,263,837 - Psyr_3580 0.63 +0.6
4,263,837 - Psyr_3580 0.63 +0.8
4,263,837 - Psyr_3580 0.63 +0.3
4,263,837 - Psyr_3580 0.63 +0.7
4,264,004 + Psyr_3580 0.75 +0.6
4,264,004 + Psyr_3580 0.75 +1.5
4,264,004 + Psyr_3580 0.75 -0.8
4,264,004 + Psyr_3580 0.75 +0.6
4,264,004 + Psyr_3580 0.75 -0.7
4,264,004 + Psyr_3580 0.75 -0.6
4,264,004 + Psyr_3580 0.75 -0.6
4,264,005 - Psyr_3580 0.75 +0.7
4,264,005 - Psyr_3580 0.75 +1.0
4,264,005 - Psyr_3580 0.75 +1.5
4,264,005 - Psyr_3580 0.75 -1.0
4,264,005 - Psyr_3580 0.75 -0.3
4,264,046 + Psyr_3580 0.78 -0.2
4,264,046 + Psyr_3580 0.78 -0.2
4,264,046 + Psyr_3580 0.78 -2.6
4,264,047 - Psyr_3580 0.78 +0.3
4,264,047 - Psyr_3580 0.78 -2.5
4,264,047 - Psyr_3580 0.78 +1.3
4,264,047 - Psyr_3580 0.78 +0.4
4,264,047 - Psyr_3580 0.78 -2.5
4,264,047 - Psyr_3580 0.78 -0.3
4,264,047 - Psyr_3580 0.78 -1.3
4,264,047 - Psyr_3580 0.78 -1.3
4,264,047 - Psyr_3580 0.78 -1.0
4,264,097 + Psyr_3580 0.82 +1.9
4,264,098 - Psyr_3580 0.82 -1.2
4,264,098 - Psyr_3580 0.82 -0.7
4,264,098 - Psyr_3580 0.82 -0.8
4,264,391 + +1.6
4,264,391 + -0.1
4,264,391 + +0.3
4,264,392 - -1.3
4,264,392 - +0.2
4,264,491 + -2.0
4,264,491 + -1.8
4,264,491 + -1.0
4,264,491 + +0.5
4,264,492 - +1.6
4,265,228 + Psyr_3581 0.49 -2.5
4,265,228 + Psyr_3581 0.49 -3.1
4,265,228 + Psyr_3581 0.49 -1.0
4,265,229 - Psyr_3581 0.49 -1.2
4,265,229 - Psyr_3581 0.49 -2.7
4,265,604 + Psyr_3581 0.80 -0.4
4,265,604 + Psyr_3581 0.80 -1.5
4,265,604 + Psyr_3581 0.80 -1.7
4,265,604 + Psyr_3581 0.80 -0.2
4,265,604 + Psyr_3581 0.80 -1.0
4,265,604 + Psyr_3581 0.80 -2.4
4,265,604 + Psyr_3581 0.80 -2.7
4,265,604 + Psyr_3581 0.80 -1.7
4,265,604 + Psyr_3581 0.80 -1.0
4,265,605 - Psyr_3581 0.80 -2.5
4,265,605 - Psyr_3581 0.80 -3.5
4,265,605 - Psyr_3581 0.80 -1.4
4,265,605 - Psyr_3581 0.80 -2.0
4,265,605 - Psyr_3581 0.80 -1.3
4,265,605 - Psyr_3581 0.80 -0.8
4,265,605 - Psyr_3581 0.80 -3.3
4,265,605 - Psyr_3581 0.80 -2.7
4,265,605 - Psyr_3581 0.80 -1.4
4,265,944 - -1.4
4,265,944 - +0.3
4,265,944 - +0.3
4,265,944 - +0.1
4,265,944 - -1.4
4,266,355 + +1.2
4,266,355 + -0.5
4,266,356 - +1.6
4,266,383 + -0.4
4,266,383 + +1.9
4,266,384 - -0.9
4,266,384 - -2.4
4,266,387 + +0.6
4,266,387 + +2.0
4,266,387 + +0.8
4,266,387 + +2.4
4,266,387 + -2.0
4,266,387 + +0.2
4,266,387 + +0.7
4,266,387 + +0.6
4,266,387 + -0.9
4,266,387 + +2.2
4,266,388 - -1.0
4,266,388 - +1.0
4,266,388 - +1.0
4,266,388 - +0.8
4,266,388 - +1.0
4,266,388 - +1.5
4,266,388 - +0.5
4,266,388 - -0.6
4,266,388 - +3.0
4,266,388 - +0.1
4,266,388 - +0.7
4,266,388 - -0.6
4,266,388 - +0.4
4,266,388 - -2.2
4,266,388 - +1.5
4,266,388 - +1.5
4,266,388 - -0.5
4,266,388 - +0.4
4,266,388 - -2.5
4,266,388 - -0.7
4,266,388 - -1.8
4,266,444 - -0.5
4,266,498 - +0.6
4,266,498 - +1.0
4,266,498 - -0.2
4,266,529 - -0.3

Or see this region's nucleotide sequence