Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3568

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3566 and Psyr_3567 are separated by 72 nucleotidesPsyr_3567 and Psyr_3568 are separated by 22 nucleotidesPsyr_3568 and Psyr_3569 are separated by 1 nucleotidesPsyr_3569 and Psyr_3570 overlap by 4 nucleotides Psyr_3566: Psyr_3566 - transcriptional regulator, AraC family, at 4,247,934 to 4,248,989 _3566 Psyr_3567: Psyr_3567 - L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein, at 4,249,062 to 4,249,826 _3567 Psyr_3568: Psyr_3568 - Succinylglutamate desuccinylase/aspartoacylase, at 4,249,849 to 4,250,961 _3568 Psyr_3569: Psyr_3569 - L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein, at 4,250,963 to 4,251,661 _3569 Psyr_3570: Psyr_3570 - L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein, at 4,251,658 to 4,252,347 _3570 Position (kb) 4249 4250 4251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4248.909 kb on + strandat 4248.909 kb on + strandat 4248.943 kb on + strandat 4248.943 kb on + strandat 4248.943 kb on + strandat 4248.944 kb on - strandat 4248.944 kb on - strandat 4248.944 kb on - strandat 4248.972 kb on + strandat 4248.973 kb on - strandat 4248.973 kb on - strandat 4248.973 kb on - strandat 4249.033 kb on - strandat 4249.033 kb on - strandat 4249.261 kb on - strand, within Psyr_3567at 4249.429 kb on + strand, within Psyr_3567at 4249.430 kb on - strand, within Psyr_3567at 4249.430 kb on - strand, within Psyr_3567at 4249.790 kb on - strandat 4249.845 kb on - strandat 4249.845 kb on - strandat 4249.925 kb on + strandat 4249.926 kb on - strandat 4249.962 kb on + strand, within Psyr_3568at 4250.084 kb on + strand, within Psyr_3568at 4250.085 kb on - strand, within Psyr_3568at 4250.085 kb on - strand, within Psyr_3568at 4250.187 kb on + strand, within Psyr_3568at 4250.429 kb on + strand, within Psyr_3568at 4250.429 kb on + strand, within Psyr_3568at 4250.429 kb on + strand, within Psyr_3568at 4250.429 kb on + strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.430 kb on - strand, within Psyr_3568at 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.867 kb on + strandat 4250.868 kb on - strandat 4250.868 kb on - strandat 4250.868 kb on - strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.941 kb on + strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4250.942 kb on - strandat 4251.049 kb on - strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.067 kb on + strand, within Psyr_3569at 4251.068 kb on - strand, within Psyr_3569at 4251.068 kb on - strand, within Psyr_3569at 4251.068 kb on - strand, within Psyr_3569at 4251.068 kb on - strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.069 kb on + strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strandat 4251.070 kb on - strand, within Psyr_3569at 4251.070 kb on - strand, within Psyr_3569at 4251.087 kb on + strand, within Psyr_3569at 4251.087 kb on + strand, within Psyr_3569at 4251.088 kb on - strand, within Psyr_3569at 4251.088 kb on - strand, within Psyr_3569at 4251.189 kb on + strand, within Psyr_3569at 4251.436 kb on - strand, within Psyr_3569at 4251.436 kb on - strand, within Psyr_3569at 4251.438 kb on + strand, within Psyr_3569at 4251.438 kb on + strand, within Psyr_3569at 4251.438 kb on + strand, within Psyr_3569at 4251.439 kb on - strand, within Psyr_3569at 4251.439 kb on - strand, within Psyr_3569at 4251.439 kb on - strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.483 kb on + strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.484 kb on - strand, within Psyr_3569at 4251.489 kb on + strand, within Psyr_3569at 4251.489 kb on + strand, within Psyr_3569at 4251.489 kb on + strand, within Psyr_3569at 4251.490 kb on - strand, within Psyr_3569at 4251.648 kb on + strandat 4251.649 kb on - strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.661 kb on + strandat 4251.662 kb on - strandat 4251.743 kb on + strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.744 kb on - strand, within Psyr_3570at 4251.956 kb on + strand, within Psyr_3570at 4251.957 kb on - strand, within Psyr_3570

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,248,909 + -0.1
4,248,909 + -0.0
4,248,943 + -1.4
4,248,943 + -1.5
4,248,943 + -0.9
4,248,944 - +0.5
4,248,944 - +0.2
4,248,944 - -0.3
4,248,972 + -0.4
4,248,973 - +0.0
4,248,973 - +1.4
4,248,973 - +1.7
4,249,033 - -0.1
4,249,033 - -1.4
4,249,261 - Psyr_3567 0.26 -2.2
4,249,429 + Psyr_3567 0.48 +0.7
4,249,430 - Psyr_3567 0.48 +0.0
4,249,430 - Psyr_3567 0.48 +0.1
4,249,790 - +0.7
4,249,845 - +0.1
4,249,845 - +1.0
4,249,925 + -2.5
4,249,926 - -0.0
4,249,962 + Psyr_3568 0.10 +0.0
4,250,084 + Psyr_3568 0.21 -0.6
4,250,085 - Psyr_3568 0.21 -1.7
4,250,085 - Psyr_3568 0.21 +1.4
4,250,187 + Psyr_3568 0.30 -1.0
4,250,429 + Psyr_3568 0.52 -1.0
4,250,429 + Psyr_3568 0.52 -0.3
4,250,429 + Psyr_3568 0.52 -2.4
4,250,429 + Psyr_3568 0.52 -1.3
4,250,430 - Psyr_3568 0.52 -1.0
4,250,430 - Psyr_3568 0.52 -0.5
4,250,430 - Psyr_3568 0.52 +0.5
4,250,430 - Psyr_3568 0.52 -0.4
4,250,430 - Psyr_3568 0.52 +1.4
4,250,430 - Psyr_3568 0.52 +1.1
4,250,430 - Psyr_3568 0.52 -1.1
4,250,430 - Psyr_3568 0.52 -1.1
4,250,430 - Psyr_3568 0.52 +1.6
4,250,430 - Psyr_3568 0.52 +0.2
4,250,867 + +1.5
4,250,867 + -0.3
4,250,867 + -1.0
4,250,867 + +4.2
4,250,867 + +1.1
4,250,867 + +1.9
4,250,867 + +0.2
4,250,868 - +0.3
4,250,868 - +1.5
4,250,868 - -1.4
4,250,941 + -0.1
4,250,941 + +1.9
4,250,941 + +0.5
4,250,941 + +0.3
4,250,941 + -1.2
4,250,941 + -0.5
4,250,942 - +2.7
4,250,942 - -2.0
4,250,942 - -0.2
4,250,942 - -2.5
4,250,942 - +0.9
4,250,942 - -0.2
4,251,049 - Psyr_3569 0.12 -0.7
4,251,067 + Psyr_3569 0.15 +1.0
4,251,067 + Psyr_3569 0.15 +1.8
4,251,067 + Psyr_3569 0.15 -0.1
4,251,068 - Psyr_3569 0.15 -0.9
4,251,068 - Psyr_3569 0.15 +1.1
4,251,068 - Psyr_3569 0.15 -1.0
4,251,068 - Psyr_3569 0.15 -2.5
4,251,069 + Psyr_3569 0.15 +1.8
4,251,069 + Psyr_3569 0.15 -3.1
4,251,069 + Psyr_3569 0.15 -1.5
4,251,069 + Psyr_3569 0.15 -0.0
4,251,069 + Psyr_3569 0.15 -1.4
4,251,069 + Psyr_3569 0.15 -0.8
4,251,069 + Psyr_3569 0.15 -0.8
4,251,069 + Psyr_3569 0.15 -2.0
4,251,069 + Psyr_3569 0.15 +3.2
4,251,069 + Psyr_3569 0.15 -2.9
4,251,069 + Psyr_3569 0.15 +0.7
4,251,070 - Psyr_3569 0.15 +0.2
4,251,070 - Psyr_3569 0.15 +0.9
4,251,070 - Psyr_3569 0.15 -0.1
4,251,070 - Psyr_3569 0.15 -0.4
4,251,070 - Psyr_3569 0.15 -0.8
4,251,070 - Psyr_3569 0.15 -0.4
4,251,070 - Psyr_3569 0.15 +0.2
4,251,070 - Psyr_3569 0.15 -0.2
4,251,070 - Psyr_3569 0.15 +0.4
4,251,070 - Psyr_3569 0.15 +0.5
4,251,070 - +0.6
4,251,070 - Psyr_3569 0.15 -1.0
4,251,070 - Psyr_3569 0.15 +1.2
4,251,087 + Psyr_3569 0.18 +1.2
4,251,087 + Psyr_3569 0.18 +0.5
4,251,088 - Psyr_3569 0.18 -1.0
4,251,088 - Psyr_3569 0.18 +0.9
4,251,189 + Psyr_3569 0.32 -2.2
4,251,436 - Psyr_3569 0.68 -0.2
4,251,436 - Psyr_3569 0.68 -0.7
4,251,438 + Psyr_3569 0.68 -0.8
4,251,438 + Psyr_3569 0.68 +1.4
4,251,438 + Psyr_3569 0.68 -1.8
4,251,439 - Psyr_3569 0.68 -1.5
4,251,439 - Psyr_3569 0.68 -1.4
4,251,439 - Psyr_3569 0.68 -1.7
4,251,483 + Psyr_3569 0.74 -0.4
4,251,483 + Psyr_3569 0.74 +0.9
4,251,483 + Psyr_3569 0.74 +0.1
4,251,483 + Psyr_3569 0.74 +1.8
4,251,483 + Psyr_3569 0.74 +0.7
4,251,484 - Psyr_3569 0.75 +0.0
4,251,484 - Psyr_3569 0.75 +0.5
4,251,484 - Psyr_3569 0.75 +0.6
4,251,484 - Psyr_3569 0.75 +0.3
4,251,484 - Psyr_3569 0.75 -1.2
4,251,484 - Psyr_3569 0.75 +1.3
4,251,489 + Psyr_3569 0.75 +0.8
4,251,489 + Psyr_3569 0.75 +2.4
4,251,489 + Psyr_3569 0.75 +0.8
4,251,490 - Psyr_3569 0.75 +2.4
4,251,648 + -1.8
4,251,649 - +3.4
4,251,661 + +1.6
4,251,661 + -1.7
4,251,661 + -0.2
4,251,661 + +2.0
4,251,661 + +0.8
4,251,661 + +0.6
4,251,661 + +0.8
4,251,662 - -3.5
4,251,743 + Psyr_3570 0.12 -0.4
4,251,744 - Psyr_3570 0.12 -0.4
4,251,744 - Psyr_3570 0.12 -0.7
4,251,744 - Psyr_3570 0.12 +0.6
4,251,744 - Psyr_3570 0.12 -0.3
4,251,956 + Psyr_3570 0.43 +0.6
4,251,957 - Psyr_3570 0.43 -0.7

Or see this region's nucleotide sequence