Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3549

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3548 and Psyr_3549 are separated by 335 nucleotidesPsyr_3549 and Psyr_RNA53 are separated by 12 nucleotidesPsyr_RNA53 and Psyr_3550 are separated by 593 nucleotides Psyr_3548: Psyr_3548 - Glutathione S-transferase, N-terminal, at 4,225,354 to 4,226,055 _3548 Psyr_3549: Psyr_3549 - MscS Mechanosensitive ion channel, at 4,226,391 to 4,228,802 _3549 Psyr_RNA53: Psyr_RNA53 - tRNA-Arg, at 4,228,815 to 4,228,891 _RNA53 Psyr_3550: Psyr_3550 - conserved hypothetical protein, at 4,229,485 to 4,229,670 _3550 Position (kb) 4226 4227 4228 4229Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4225.404 kb on - strandat 4225.404 kb on - strandat 4225.446 kb on - strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.943 kb on + strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4225.944 kb on - strand, within Psyr_3548at 4226.073 kb on - strandat 4226.100 kb on + strandat 4226.169 kb on + strandat 4226.170 kb on - strandat 4226.170 kb on - strandat 4226.170 kb on - strandat 4226.170 kb on - strandat 4226.818 kb on + strand, within Psyr_3549at 4226.818 kb on + strand, within Psyr_3549at 4226.818 kb on + strand, within Psyr_3549at 4226.818 kb on + strand, within Psyr_3549at 4226.818 kb on + strand, within Psyr_3549at 4226.819 kb on - strand, within Psyr_3549at 4226.819 kb on - strand, within Psyr_3549at 4226.851 kb on + strand, within Psyr_3549at 4226.989 kb on + strand, within Psyr_3549at 4226.998 kb on + strand, within Psyr_3549at 4226.999 kb on - strand, within Psyr_3549at 4227.256 kb on + strand, within Psyr_3549at 4227.256 kb on + strand, within Psyr_3549at 4227.257 kb on - strand, within Psyr_3549at 4227.257 kb on - strand, within Psyr_3549at 4227.291 kb on - strand, within Psyr_3549at 4227.291 kb on - strand, within Psyr_3549at 4227.534 kb on + strand, within Psyr_3549at 4227.534 kb on + strand, within Psyr_3549at 4227.534 kb on + strand, within Psyr_3549at 4227.534 kb on + strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.535 kb on - strand, within Psyr_3549at 4227.715 kb on + strand, within Psyr_3549at 4227.716 kb on - strand, within Psyr_3549at 4227.729 kb on + strand, within Psyr_3549at 4227.729 kb on + strand, within Psyr_3549at 4227.729 kb on + strand, within Psyr_3549at 4227.730 kb on - strand, within Psyr_3549at 4227.730 kb on - strand, within Psyr_3549at 4227.848 kb on + strand, within Psyr_3549at 4227.849 kb on - strand, within Psyr_3549at 4227.865 kb on + strand, within Psyr_3549at 4227.865 kb on + strand, within Psyr_3549at 4227.895 kb on + strand, within Psyr_3549at 4227.895 kb on + strand, within Psyr_3549at 4227.896 kb on - strand, within Psyr_3549at 4227.896 kb on - strand, within Psyr_3549at 4228.016 kb on - strand, within Psyr_3549at 4228.143 kb on + strand, within Psyr_3549at 4228.143 kb on + strand, within Psyr_3549at 4228.241 kb on - strand, within Psyr_3549at 4228.241 kb on - strand, within Psyr_3549at 4228.342 kb on + strand, within Psyr_3549at 4228.342 kb on + strand, within Psyr_3549at 4228.342 kb on + strand, within Psyr_3549at 4228.493 kb on + strand, within Psyr_3549at 4228.493 kb on + strand, within Psyr_3549at 4228.526 kb on - strand, within Psyr_3549at 4228.526 kb on - strand, within Psyr_3549at 4228.568 kb on - strandat 4228.641 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.811 kb on + strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.812 kb on - strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.813 kb on + strandat 4228.814 kb on - strandat 4228.814 kb on - strandat 4228.814 kb on - strandat 4228.814 kb on - strandat 4228.814 kb on - strandat 4228.814 kb on - strandat 4229.449 kb on + strandat 4229.587 kb on - strand, within Psyr_3550at 4229.587 kb on - strand, within Psyr_3550at 4229.680 kb on + strandat 4229.681 kb on - strandat 4229.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,225,404 - +2.4
4,225,404 - -0.9
4,225,446 - Psyr_3548 0.13 +0.4
4,225,943 + Psyr_3548 0.84 +0.0
4,225,943 + Psyr_3548 0.84 +1.7
4,225,943 + Psyr_3548 0.84 +0.0
4,225,943 + Psyr_3548 0.84 -1.3
4,225,943 + Psyr_3548 0.84 -1.3
4,225,943 + Psyr_3548 0.84 -0.1
4,225,944 - Psyr_3548 0.84 -1.2
4,225,944 - Psyr_3548 0.84 -1.7
4,225,944 - Psyr_3548 0.84 +1.0
4,225,944 - Psyr_3548 0.84 +0.8
4,225,944 - Psyr_3548 0.84 +0.1
4,225,944 - Psyr_3548 0.84 -0.4
4,226,073 - -0.1
4,226,100 + +0.0
4,226,169 + -1.3
4,226,170 - +1.4
4,226,170 - +0.2
4,226,170 - +2.6
4,226,170 - -0.1
4,226,818 + Psyr_3549 0.18 +0.9
4,226,818 + Psyr_3549 0.18 -0.2
4,226,818 + Psyr_3549 0.18 +1.7
4,226,818 + Psyr_3549 0.18 -2.0
4,226,818 + Psyr_3549 0.18 +2.0
4,226,819 - Psyr_3549 0.18 +0.7
4,226,819 - Psyr_3549 0.18 -2.3
4,226,851 + Psyr_3549 0.19 +0.5
4,226,989 + Psyr_3549 0.25 -1.7
4,226,998 + Psyr_3549 0.25 +0.6
4,226,999 - Psyr_3549 0.25 -1.0
4,227,256 + Psyr_3549 0.36 -1.0
4,227,256 + Psyr_3549 0.36 +1.0
4,227,257 - Psyr_3549 0.36 +1.6
4,227,257 - Psyr_3549 0.36 +0.9
4,227,291 - Psyr_3549 0.37 +0.9
4,227,291 - Psyr_3549 0.37 -0.6
4,227,534 + Psyr_3549 0.47 -0.6
4,227,534 + Psyr_3549 0.47 +0.6
4,227,534 + Psyr_3549 0.47 +1.5
4,227,534 + Psyr_3549 0.47 +0.9
4,227,535 - Psyr_3549 0.47 -0.4
4,227,535 - Psyr_3549 0.47 -0.4
4,227,535 - Psyr_3549 0.47 +0.5
4,227,535 - Psyr_3549 0.47 -0.6
4,227,535 - Psyr_3549 0.47 -1.1
4,227,535 - Psyr_3549 0.47 -1.6
4,227,535 - Psyr_3549 0.47 -1.2
4,227,535 - Psyr_3549 0.47 -1.8
4,227,535 - Psyr_3549 0.47 +1.6
4,227,715 + Psyr_3549 0.55 +1.0
4,227,716 - Psyr_3549 0.55 -1.7
4,227,729 + Psyr_3549 0.55 -0.6
4,227,729 + Psyr_3549 0.55 +0.8
4,227,729 + Psyr_3549 0.55 -1.2
4,227,730 - Psyr_3549 0.56 +0.2
4,227,730 - Psyr_3549 0.56 -0.1
4,227,848 + Psyr_3549 0.60 +0.0
4,227,849 - Psyr_3549 0.60 +1.3
4,227,865 + Psyr_3549 0.61 +0.7
4,227,865 + Psyr_3549 0.61 +1.6
4,227,895 + Psyr_3549 0.62 -2.2
4,227,895 + Psyr_3549 0.62 +2.1
4,227,896 - Psyr_3549 0.62 -0.4
4,227,896 - Psyr_3549 0.62 +0.4
4,228,016 - Psyr_3549 0.67 +1.5
4,228,143 + Psyr_3549 0.73 +0.9
4,228,143 + Psyr_3549 0.73 -2.8
4,228,241 - Psyr_3549 0.77 +0.7
4,228,241 - Psyr_3549 0.77 -2.2
4,228,342 + Psyr_3549 0.81 -1.2
4,228,342 + Psyr_3549 0.81 +1.3
4,228,342 + Psyr_3549 0.81 +0.8
4,228,493 + Psyr_3549 0.87 -1.7
4,228,493 + Psyr_3549 0.87 +0.1
4,228,526 - Psyr_3549 0.89 +0.9
4,228,526 - Psyr_3549 0.89 -1.0
4,228,568 - -0.3
4,228,641 + +0.4
4,228,811 + +2.5
4,228,811 + -0.3
4,228,811 + -2.6
4,228,811 + -2.2
4,228,811 + +0.8
4,228,811 + -1.1
4,228,811 + +0.5
4,228,811 + -2.2
4,228,811 + -2.2
4,228,811 + +0.6
4,228,812 - -2.0
4,228,812 - -1.5
4,228,812 - -0.4
4,228,812 - -2.0
4,228,812 - +1.1
4,228,812 - +1.6
4,228,812 - -0.2
4,228,812 - -1.2
4,228,812 - +1.0
4,228,812 - -1.3
4,228,813 + -2.2
4,228,813 + +0.6
4,228,813 + -0.5
4,228,813 + -0.5
4,228,813 + +0.4
4,228,813 + +0.4
4,228,813 + +0.5
4,228,813 + -1.0
4,228,814 - -1.8
4,228,814 - -1.4
4,228,814 - -0.3
4,228,814 - -2.2
4,228,814 - -2.7
4,228,814 - -2.5
4,229,449 + -1.0
4,229,587 - Psyr_3550 0.55 -0.3
4,229,587 - Psyr_3550 0.55 -2.5
4,229,680 + +0.0
4,229,681 - +2.1
4,229,681 - -1.2

Or see this region's nucleotide sequence