Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3527 and Psyr_3528 are separated by 75 nucleotides Psyr_3528 and Psyr_3529 are separated by 263 nucleotides
Psyr_3527: Psyr_3527 - glutathione-independent formaldehyde dehydrogenase, at 4,203,866 to 4,205,101
_3527
Psyr_3528: Psyr_3528 - hypothetical protein, at 4,205,177 to 4,205,419
_3528
Psyr_3529: Psyr_3529 - Asp/Glu racemase, at 4,205,683 to 4,206,414
_3529
Position (kb) 4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4204.263 kb on - strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.293 kb on - strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.541 kb on + strand, within Psyr_3527 at 4204.542 kb on - strand, within Psyr_3527 at 4204.557 kb on - strand, within Psyr_3527 at 4204.758 kb on + strand, within Psyr_3527 at 4204.758 kb on + strand, within Psyr_3527 at 4204.759 kb on - strand, within Psyr_3527 at 4204.791 kb on + strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.266 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.438 kb on + strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.440 kb on + strand at 4205.440 kb on + strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.485 kb on + strand at 4205.485 kb on + strand at 4205.486 kb on - strand at 4205.486 kb on - strand at 4205.616 kb on + strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.697 kb on - strand at 4205.989 kb on - strand, within Psyr_3529 at 4206.007 kb on + strand, within Psyr_3529 at 4206.007 kb on + strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 4,204,263 - Psyr_3527 0.32 -0.2 4,204,292 + Psyr_3527 0.34 +0.2 4,204,292 + Psyr_3527 0.34 -1.1 4,204,292 + Psyr_3527 0.34 -2.4 4,204,292 + Psyr_3527 0.34 +1.7 4,204,292 + Psyr_3527 0.34 -0.5 4,204,293 - Psyr_3527 0.35 +0.3 4,204,442 + Psyr_3527 0.47 +0.0 4,204,442 + Psyr_3527 0.47 -0.1 4,204,442 + Psyr_3527 0.47 +0.0 4,204,442 + Psyr_3527 0.47 -0.2 4,204,541 + Psyr_3527 0.55 -0.1 4,204,542 - Psyr_3527 0.55 +0.4 4,204,557 - Psyr_3527 0.56 +1.8 4,204,758 + Psyr_3527 0.72 -1.3 4,204,758 + Psyr_3527 0.72 +0.6 4,204,759 - Psyr_3527 0.72 -0.0 4,204,791 + Psyr_3527 0.75 -0.4 4,204,794 - Psyr_3527 0.75 +1.3 4,204,794 - Psyr_3527 0.75 -1.3 4,204,794 - Psyr_3527 0.75 +0.9 4,204,794 - Psyr_3527 0.75 -1.7 4,205,099 + -0.1 4,205,099 + +0.2 4,205,099 + +0.3 4,205,099 + -0.4 4,205,099 + +0.8 4,205,099 + +0.9 4,205,099 + -0.6 4,205,099 + +0.8 4,205,099 + +0.7 4,205,099 + +1.4 4,205,099 + -1.4 4,205,099 + +0.3 4,205,099 + +1.0 4,205,100 - -0.7 4,205,100 - -0.9 4,205,100 - +0.0 4,205,100 - -0.8 4,205,100 - +0.6 4,205,100 - +0.8 4,205,100 - +0.7 4,205,100 - -0.0 4,205,100 - -0.8 4,205,100 - -0.1 4,205,100 - -0.6 4,205,100 - -0.6 4,205,100 - -0.6 4,205,100 - -1.1 4,205,100 - -0.8 4,205,100 - -0.6 4,205,100 - -0.2 4,205,100 - +0.6 4,205,100 - -1.9 4,205,176 + +0.1 4,205,176 + +2.1 4,205,176 + +1.1 4,205,176 + +0.9 4,205,176 + -1.1 4,205,176 + -1.1 4,205,176 + -1.3 4,205,176 + -0.7 4,205,176 + -0.1 4,205,176 + +0.3 4,205,176 + -0.7 4,205,176 + +2.6 4,205,176 + +1.3 4,205,177 - +0.1 4,205,177 - +1.3 4,205,177 - +0.6 4,205,177 - -0.9 4,205,177 - +1.6 4,205,177 - +2.5 4,205,177 - -0.7 4,205,177 - +1.7 4,205,177 - -0.6 4,205,177 - -2.9 4,205,177 - -0.4 4,205,177 - +0.5 4,205,177 - +0.1 4,205,177 - +1.6 4,205,177 - +0.2 4,205,177 - +1.2 4,205,177 - +0.8 4,205,177 - -1.2 4,205,177 - -2.2 4,205,177 - +0.4 4,205,177 - -0.1 4,205,266 - Psyr_3528 0.37 -0.2 4,205,352 - Psyr_3528 0.72 -0.1 4,205,352 - Psyr_3528 0.72 -2.3 4,205,352 - Psyr_3528 0.72 -0.4 4,205,352 - Psyr_3528 0.72 +0.6 4,205,352 - Psyr_3528 0.72 -1.2 4,205,352 - Psyr_3528 0.72 -0.5 4,205,352 - Psyr_3528 0.72 -1.4 4,205,352 - Psyr_3528 0.72 -0.9 4,205,352 - Psyr_3528 0.72 +2.2 4,205,352 - Psyr_3528 0.72 -2.0 4,205,352 - Psyr_3528 0.72 -0.4 4,205,352 - Psyr_3528 0.72 -1.6 4,205,352 - Psyr_3528 0.72 +0.3 4,205,352 - Psyr_3528 0.72 -0.3 4,205,352 - Psyr_3528 0.72 -0.8 4,205,352 - Psyr_3528 0.72 +2.0 4,205,438 + +0.4 4,205,439 - +1.2 4,205,439 - +0.5 4,205,439 - +1.1 4,205,439 - +2.2 4,205,439 - -1.6 4,205,439 - +1.5 4,205,439 - +1.7 4,205,439 - +0.3 4,205,439 - +2.0 4,205,440 + +0.5 4,205,440 + -0.2 4,205,441 - +0.3 4,205,441 - +0.0 4,205,441 - +0.2 4,205,441 - +0.5 4,205,441 - +2.9 4,205,441 - -1.9 4,205,441 - +0.5 4,205,441 - -0.1 4,205,441 - +0.6 4,205,441 - +1.1 4,205,441 - +0.6 4,205,441 - +1.7 4,205,441 - +0.9 4,205,441 - -0.6 4,205,441 - -0.1 4,205,441 - -0.6 4,205,441 - +0.6 4,205,441 - +0.5 4,205,441 - +2.0 4,205,441 - +0.3 4,205,441 - +1.3 4,205,441 - -0.1 4,205,441 - +1.9 4,205,441 - +0.6 4,205,441 - +0.6 4,205,441 - +1.3 4,205,441 - +0.9 4,205,441 - -1.7 4,205,441 - -0.3 4,205,441 - +1.5 4,205,441 - -1.4 4,205,441 - +0.0 4,205,441 - +0.9 4,205,441 - -0.5 4,205,485 + +1.2 4,205,485 + +0.2 4,205,486 - -1.0 4,205,486 - -0.3 4,205,616 + +1.2 4,205,617 - -1.0 4,205,617 - -1.9 4,205,617 - +0.6 4,205,617 - +1.3 4,205,617 - +1.2 4,205,617 - +0.6 4,205,617 - +0.1 4,205,617 - +2.6 4,205,617 - -0.3 4,205,617 - -1.1 4,205,617 - +0.7 4,205,617 - -1.0 4,205,617 - -1.0 4,205,617 - -0.6 4,205,617 - -1.7 4,205,617 - +1.4 4,205,617 - +0.4 4,205,617 - +0.6 4,205,617 - +0.1 4,205,617 - +2.6 4,205,617 - +1.1 4,205,617 - +0.9 4,205,617 - +0.6 4,205,617 - +0.3 4,205,617 - -0.1 4,205,617 - +1.6 4,205,697 - +0.7 4,205,989 - Psyr_3529 0.42 +0.7 4,206,007 + Psyr_3529 0.44 +1.0 4,206,007 + Psyr_3529 0.44 -0.1 4,206,008 - Psyr_3529 0.44 -0.2 4,206,008 - Psyr_3529 0.44 -0.5 4,206,008 - Psyr_3529 0.44 +0.6 4,206,008 - Psyr_3529 0.44 +0.1
Or see this region's nucleotide sequence