Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3525 and Psyr_3526 are separated by 161 nucleotides Psyr_3526 and Psyr_3527 are separated by 104 nucleotides
Psyr_3525: Psyr_3525 - 3-hydroxyisobutyrate dehydrogenase, at 4,201,804 to 4,202,694
_3525
Psyr_3526: Psyr_3526 - transcriptional regulator, LysR family, at 4,202,856 to 4,203,761
_3526
Psyr_3527: Psyr_3527 - glutathione-independent formaldehyde dehydrogenase, at 4,203,866 to 4,205,101
_3527
Position (kb) 4202
4203
4204 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4202.006 kb on + strand, within Psyr_3525 at 4202.006 kb on + strand, within Psyr_3525 at 4202.007 kb on - strand, within Psyr_3525 at 4202.007 kb on - strand, within Psyr_3525 at 4202.424 kb on + strand, within Psyr_3525 at 4202.727 kb on + strand at 4202.825 kb on + strand at 4202.825 kb on + strand at 4202.825 kb on + strand at 4202.825 kb on + strand at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.063 kb on + strand, within Psyr_3526 at 4203.210 kb on + strand, within Psyr_3526 at 4203.211 kb on - strand, within Psyr_3526 at 4203.211 kb on - strand, within Psyr_3526 at 4203.407 kb on - strand, within Psyr_3526 at 4203.407 kb on - strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.607 kb on + strand, within Psyr_3526 at 4203.608 kb on - strand, within Psyr_3526 at 4203.740 kb on + strand at 4203.740 kb on + strand at 4203.764 kb on + strand at 4203.764 kb on + strand at 4203.765 kb on - strand at 4203.765 kb on - strand at 4203.881 kb on + strand at 4203.882 kb on - strand at 4203.882 kb on - strand at 4203.882 kb on - strand at 4203.900 kb on + strand at 4203.900 kb on + strand at 4203.901 kb on - strand at 4203.974 kb on - strand at 4203.998 kb on + strand, within Psyr_3527 at 4204.093 kb on - strand, within Psyr_3527 at 4204.263 kb on - strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.293 kb on - strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.541 kb on + strand, within Psyr_3527 at 4204.542 kb on - strand, within Psyr_3527 at 4204.557 kb on - strand, within Psyr_3527 at 4204.758 kb on + strand, within Psyr_3527 at 4204.758 kb on + strand, within Psyr_3527 at 4204.759 kb on - strand, within Psyr_3527
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 4,202,006 + Psyr_3525 0.23 -1.4 4,202,006 + Psyr_3525 0.23 +0.3 4,202,007 - Psyr_3525 0.23 +0.5 4,202,007 - Psyr_3525 0.23 -0.4 4,202,424 + Psyr_3525 0.70 +0.7 4,202,727 + +2.9 4,202,825 + -1.7 4,202,825 + -0.3 4,202,825 + -0.2 4,202,825 + +0.2 4,203,063 + Psyr_3526 0.23 +1.1 4,203,063 + Psyr_3526 0.23 +0.4 4,203,063 + Psyr_3526 0.23 +1.7 4,203,063 + Psyr_3526 0.23 +0.5 4,203,063 + Psyr_3526 0.23 -0.7 4,203,210 + Psyr_3526 0.39 +0.5 4,203,211 - Psyr_3526 0.39 -0.5 4,203,211 - Psyr_3526 0.39 +0.0 4,203,407 - Psyr_3526 0.61 +1.4 4,203,407 - Psyr_3526 0.61 +0.7 4,203,607 + Psyr_3526 0.83 +0.0 4,203,607 + Psyr_3526 0.83 -0.7 4,203,607 + Psyr_3526 0.83 +1.6 4,203,608 - Psyr_3526 0.83 +0.8 4,203,740 + -1.4 4,203,740 + -2.9 4,203,764 + +0.0 4,203,764 + -0.7 4,203,765 - +1.0 4,203,765 - +0.1 4,203,881 + -0.4 4,203,882 - -1.7 4,203,882 - +0.8 4,203,882 - -0.7 4,203,900 + -0.4 4,203,900 + -4.3 4,203,901 - +0.0 4,203,974 - +1.8 4,203,998 + Psyr_3527 0.11 -1.7 4,204,093 - Psyr_3527 0.18 -0.3 4,204,263 - Psyr_3527 0.32 -0.2 4,204,292 + Psyr_3527 0.34 +0.2 4,204,292 + Psyr_3527 0.34 -1.1 4,204,292 + Psyr_3527 0.34 -2.4 4,204,292 + Psyr_3527 0.34 +1.7 4,204,292 + Psyr_3527 0.34 -0.5 4,204,293 - Psyr_3527 0.35 +0.3 4,204,442 + Psyr_3527 0.47 +0.0 4,204,442 + Psyr_3527 0.47 -0.1 4,204,442 + Psyr_3527 0.47 +0.0 4,204,442 + Psyr_3527 0.47 -0.2 4,204,541 + Psyr_3527 0.55 -0.1 4,204,542 - Psyr_3527 0.55 +0.4 4,204,557 - Psyr_3527 0.56 +1.8 4,204,758 + Psyr_3527 0.72 -1.3 4,204,758 + Psyr_3527 0.72 +0.6 4,204,759 - Psyr_3527 0.72 -0.0
Or see this region's nucleotide sequence