Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3443 and Psyr_3444 are separated by 25 nucleotides Psyr_3444 and Psyr_3445 overlap by 1 nucleotides Psyr_3445 and Psyr_3446 are separated by 0 nucleotides Psyr_3446 and Psyr_3447 are separated by 61 nucleotides
Psyr_3443: Psyr_3443 - Flagellar biosynthesis protein FliQ, at 4,107,991 to 4,108,260
_3443
Psyr_3444: Psyr_3444 - Flagellar transport protein FliP, at 4,108,286 to 4,109,038
_3444
Psyr_3445: Psyr_3445 - Flagellar biosynthesis protein, FliO, at 4,109,038 to 4,109,478
_3445
Psyr_3446: Psyr_3446 - Surface presentation of antigens (SPOA) protein, at 4,109,479 to 4,109,937
_3446
Psyr_3447: Psyr_3447 - Flagellar motor switch protein FliM, at 4,109,999 to 4,110,967
_3447
Position (kb) 4109
4110 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4108.045 kb on + strand, within Psyr_3443 at 4108.046 kb on - strand, within Psyr_3443 at 4108.046 kb on - strand, within Psyr_3443 at 4108.246 kb on + strand at 4108.289 kb on + strand at 4108.289 kb on + strand at 4108.290 kb on - strand at 4108.290 kb on - strand at 4108.522 kb on + strand, within Psyr_3444 at 4109.016 kb on - strand at 4109.016 kb on - strand at 4109.242 kb on + strand, within Psyr_3445 at 4109.243 kb on - strand, within Psyr_3445 at 4109.243 kb on - strand, within Psyr_3445 at 4109.670 kb on + strand, within Psyr_3446 at 4109.671 kb on - strand, within Psyr_3446 at 4109.920 kb on - strand at 4109.967 kb on + strand at 4110.023 kb on + strand at 4110.024 kb on - strand at 4110.024 kb on - strand at 4110.024 kb on - strand at 4110.077 kb on + strand at 4110.377 kb on + strand, within Psyr_3447 at 4110.435 kb on + strand, within Psyr_3447
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 4,108,045 + Psyr_3443 0.20 -0.7 4,108,046 - Psyr_3443 0.20 +1.0 4,108,046 - Psyr_3443 0.20 +0.2 4,108,246 + +0.3 4,108,289 + +0.1 4,108,289 + +1.4 4,108,290 - +0.9 4,108,290 - +1.3 4,108,522 + Psyr_3444 0.31 -1.0 4,109,016 - +0.6 4,109,016 - +0.1 4,109,242 + Psyr_3445 0.46 +2.4 4,109,243 - Psyr_3445 0.46 -3.1 4,109,243 - Psyr_3445 0.46 +0.6 4,109,670 + Psyr_3446 0.42 -2.2 4,109,671 - Psyr_3446 0.42 +0.5 4,109,920 - -0.3 4,109,967 + +1.4 4,110,023 + +1.4 4,110,024 - +1.6 4,110,024 - -1.4 4,110,024 - +0.8 4,110,077 + -1.4 4,110,377 + Psyr_3447 0.39 -1.2 4,110,435 + Psyr_3447 0.45 +0.4
Or see this region's nucleotide sequence