Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3431

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3429 and Psyr_3430 are separated by 75 nucleotidesPsyr_3430 and Psyr_3431 are separated by 45 nucleotidesPsyr_3431 and Psyr_3432 are separated by 6 nucleotidesPsyr_3432 and Psyr_3433 overlap by 1 nucleotides Psyr_3429: Psyr_3429 - CheW-like protein, at 4,092,173 to 4,093,075 _3429 Psyr_3430: Psyr_3430 - Cobyrinic acid a,c-diamide synthase, at 4,093,151 to 4,093,939 _3430 Psyr_3431: Psyr_3431 - OmpA/MotB, at 4,093,985 to 4,094,872 _3431 Psyr_3432: Psyr_3432 - MotA/TolQ/ExbB proton channel, at 4,094,879 to 4,095,619 _3432 Psyr_3433: Psyr_3433 - Protein-glutamate methylesterase, at 4,095,619 to 4,096,779 _3433 Position (kb) 4093 4094 4095Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4093.028 kb on + strandat 4093.028 kb on + strandat 4093.028 kb on + strandat 4093.028 kb on + strandat 4093.028 kb on + strandat 4093.029 kb on - strandat 4093.029 kb on - strandat 4093.034 kb on + strandat 4093.035 kb on - strandat 4093.130 kb on + strandat 4093.130 kb on + strandat 4093.130 kb on + strandat 4093.131 kb on - strandat 4093.131 kb on - strandat 4093.186 kb on + strandat 4093.186 kb on + strandat 4093.186 kb on + strandat 4093.186 kb on + strandat 4093.187 kb on - strandat 4093.187 kb on - strandat 4093.187 kb on - strandat 4093.187 kb on - strandat 4093.187 kb on - strandat 4093.187 kb on - strandat 4093.187 kb on - strandat 4093.249 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.296 kb on + strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.297 kb on - strand, within Psyr_3430at 4093.395 kb on + strand, within Psyr_3430at 4093.395 kb on + strand, within Psyr_3430at 4093.395 kb on + strand, within Psyr_3430at 4093.396 kb on - strand, within Psyr_3430at 4093.396 kb on - strand, within Psyr_3430at 4093.439 kb on - strand, within Psyr_3430at 4093.684 kb on + strand, within Psyr_3430at 4093.684 kb on + strand, within Psyr_3430at 4093.684 kb on + strand, within Psyr_3430at 4093.685 kb on - strand, within Psyr_3430at 4093.685 kb on - strand, within Psyr_3430at 4093.744 kb on + strand, within Psyr_3430at 4093.801 kb on - strand, within Psyr_3430at 4093.801 kb on - strand, within Psyr_3430at 4093.940 kb on + strandat 4093.940 kb on + strandat 4093.940 kb on + strandat 4093.940 kb on + strandat 4093.941 kb on - strandat 4094.147 kb on - strand, within Psyr_3431at 4094.156 kb on + strand, within Psyr_3431at 4094.157 kb on - strand, within Psyr_3431at 4094.594 kb on + strand, within Psyr_3431at 4094.595 kb on - strand, within Psyr_3431at 4094.595 kb on - strand, within Psyr_3431at 4094.595 kb on - strand, within Psyr_3431at 4094.739 kb on + strand, within Psyr_3431at 4094.739 kb on + strand, within Psyr_3431at 4094.739 kb on + strand, within Psyr_3431at 4094.739 kb on + strand, within Psyr_3431at 4094.740 kb on - strand, within Psyr_3431at 4094.740 kb on - strand, within Psyr_3431at 4094.740 kb on - strand, within Psyr_3431at 4094.769 kb on + strand, within Psyr_3431at 4094.769 kb on + strand, within Psyr_3431at 4094.770 kb on - strand, within Psyr_3431at 4094.770 kb on - strand, within Psyr_3431at 4094.770 kb on - strand, within Psyr_3431at 4094.770 kb on - strand, within Psyr_3431at 4094.795 kb on + strandat 4094.795 kb on + strandat 4094.800 kb on + strandat 4094.800 kb on + strandat 4094.814 kb on + strandat 4094.815 kb on - strandat 4094.881 kb on - strandat 4094.881 kb on - strandat 4095.048 kb on + strand, within Psyr_3432at 4095.048 kb on + strand, within Psyr_3432at 4095.048 kb on + strand, within Psyr_3432at 4095.048 kb on + strand, within Psyr_3432at 4095.049 kb on - strand, within Psyr_3432at 4095.049 kb on - strand, within Psyr_3432at 4095.611 kb on + strandat 4095.611 kb on + strandat 4095.612 kb on - strandat 4095.612 kb on - strandat 4095.665 kb on + strandat 4095.665 kb on + strandat 4095.666 kb on - strandat 4095.666 kb on - strandat 4095.666 kb on - strandat 4095.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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4,093,028 + -0.9
4,093,028 + -0.2
4,093,028 + +0.5
4,093,028 + -1.3
4,093,028 + +1.9
4,093,029 - -1.5
4,093,029 - +0.2
4,093,034 + -1.2
4,093,035 - -3.0
4,093,130 + -0.7
4,093,130 + -0.7
4,093,130 + +0.4
4,093,131 - -0.3
4,093,131 - -1.0
4,093,186 + +0.2
4,093,186 + +0.4
4,093,186 + -2.5
4,093,186 + -1.2
4,093,187 - -2.8
4,093,187 - -0.6
4,093,187 - +0.8
4,093,187 - -0.6
4,093,187 - -1.0
4,093,187 - +2.5
4,093,187 - -1.5
4,093,249 + Psyr_3430 0.12 -2.6
4,093,296 + Psyr_3430 0.18 -0.9
4,093,296 + Psyr_3430 0.18 +0.3
4,093,296 + Psyr_3430 0.18 +0.4
4,093,296 + Psyr_3430 0.18 -1.4
4,093,296 + Psyr_3430 0.18 -3.0
4,093,296 + Psyr_3430 0.18 +1.9
4,093,296 + Psyr_3430 0.18 -0.1
4,093,296 + Psyr_3430 0.18 +0.7
4,093,296 + Psyr_3430 0.18 +1.0
4,093,297 - Psyr_3430 0.19 -1.0
4,093,297 - Psyr_3430 0.19 -1.8
4,093,297 - Psyr_3430 0.19 +0.8
4,093,297 - Psyr_3430 0.19 +0.5
4,093,297 - Psyr_3430 0.19 -0.8
4,093,297 - Psyr_3430 0.19 -0.6
4,093,297 - Psyr_3430 0.19 +0.5
4,093,297 - Psyr_3430 0.19 +0.8
4,093,395 + Psyr_3430 0.31 +0.0
4,093,395 + Psyr_3430 0.31 +0.1
4,093,395 + Psyr_3430 0.31 -0.0
4,093,396 - Psyr_3430 0.31 -0.3
4,093,396 - Psyr_3430 0.31 +0.3
4,093,439 - Psyr_3430 0.37 +0.2
4,093,684 + Psyr_3430 0.68 -0.8
4,093,684 + Psyr_3430 0.68 +0.7
4,093,684 + Psyr_3430 0.68 +0.4
4,093,685 - Psyr_3430 0.68 +1.8
4,093,685 - Psyr_3430 0.68 -0.5
4,093,744 + Psyr_3430 0.75 +3.5
4,093,801 - Psyr_3430 0.82 -0.1
4,093,801 - Psyr_3430 0.82 +0.2
4,093,940 + +0.9
4,093,940 + +1.0
4,093,940 + +0.2
4,093,940 + +0.9
4,093,941 - +0.1
4,094,147 - Psyr_3431 0.18 +2.4
4,094,156 + Psyr_3431 0.19 +2.0
4,094,157 - Psyr_3431 0.19 +0.1
4,094,594 + Psyr_3431 0.69 +1.1
4,094,595 - Psyr_3431 0.69 -0.8
4,094,595 - Psyr_3431 0.69 +0.7
4,094,595 - Psyr_3431 0.69 +1.9
4,094,739 + Psyr_3431 0.85 +0.0
4,094,739 + Psyr_3431 0.85 -2.3
4,094,739 + Psyr_3431 0.85 +1.3
4,094,739 + Psyr_3431 0.85 +1.4
4,094,740 - Psyr_3431 0.85 -3.2
4,094,740 - Psyr_3431 0.85 -0.1
4,094,740 - Psyr_3431 0.85 +1.0
4,094,769 + Psyr_3431 0.88 -1.1
4,094,769 + Psyr_3431 0.88 +0.8
4,094,770 - Psyr_3431 0.88 -1.0
4,094,770 - Psyr_3431 0.88 +0.9
4,094,770 - Psyr_3431 0.88 +1.2
4,094,770 - Psyr_3431 0.88 +0.8
4,094,795 + -0.8
4,094,795 + -2.0
4,094,800 + -1.0
4,094,800 + +2.0
4,094,814 + +0.8
4,094,815 - +0.1
4,094,881 - -3.0
4,094,881 - +0.3
4,095,048 + Psyr_3432 0.23 +1.9
4,095,048 + Psyr_3432 0.23 +1.5
4,095,048 + Psyr_3432 0.23 -1.1
4,095,048 + Psyr_3432 0.23 +1.8
4,095,049 - Psyr_3432 0.23 +0.2
4,095,049 - Psyr_3432 0.23 -1.7
4,095,611 + +0.2
4,095,611 + -0.7
4,095,612 - -1.2
4,095,612 - +0.7
4,095,665 + +1.1
4,095,665 + +0.5
4,095,666 - -1.8
4,095,666 - -1.5
4,095,666 - +0.0
4,095,713 + +0.8

Or see this region's nucleotide sequence