Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3398 and Psyr_3399 overlap by 11 nucleotides Psyr_3399 and Psyr_3400 are separated by 13 nucleotides
Psyr_3398: Psyr_3398 - Alanine racemase, N-terminal, at 4,055,262 to 4,056,398
_3398
Psyr_3399: Psyr_3399 - Endoribonuclease L-PSP, at 4,056,388 to 4,056,786
_3399
Psyr_3400: Psyr_3400 - FAD dependent oxidoreductase, at 4,056,800 to 4,057,984
_3400
Position (kb) 4056
4057 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4055.508 kb on + strand, within Psyr_3398 at 4055.509 kb on - strand, within Psyr_3398 at 4055.509 kb on - strand, within Psyr_3398 at 4055.509 kb on - strand, within Psyr_3398 at 4055.509 kb on - strand, within Psyr_3398 at 4055.509 kb on - strand, within Psyr_3398 at 4055.597 kb on - strand, within Psyr_3398 at 4055.787 kb on + strand, within Psyr_3398 at 4055.787 kb on + strand, within Psyr_3398 at 4055.788 kb on - strand, within Psyr_3398 at 4055.788 kb on - strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.970 kb on + strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4055.971 kb on - strand, within Psyr_3398 at 4056.339 kb on + strand at 4056.372 kb on - strand at 4056.628 kb on + strand, within Psyr_3399 at 4056.628 kb on + strand, within Psyr_3399 at 4056.629 kb on - strand, within Psyr_3399 at 4056.629 kb on - strand, within Psyr_3399 at 4056.629 kb on - strand, within Psyr_3399 at 4056.629 kb on - strand, within Psyr_3399 at 4056.771 kb on + strand at 4056.923 kb on + strand, within Psyr_3400 at 4056.924 kb on - strand, within Psyr_3400 at 4057.112 kb on + strand, within Psyr_3400 at 4057.113 kb on - strand, within Psyr_3400 at 4057.218 kb on - strand, within Psyr_3400 at 4057.374 kb on + strand, within Psyr_3400 at 4057.374 kb on + strand, within Psyr_3400 at 4057.374 kb on + strand, within Psyr_3400 at 4057.375 kb on - strand, within Psyr_3400 at 4057.375 kb on - strand, within Psyr_3400 at 4057.375 kb on - strand, within Psyr_3400 at 4057.375 kb on - strand, within Psyr_3400 at 4057.375 kb on - strand, within Psyr_3400 at 4057.375 kb on - strand, within Psyr_3400 at 4057.553 kb on + strand, within Psyr_3400 at 4057.553 kb on + strand, within Psyr_3400 at 4057.553 kb on + strand, within Psyr_3400 at 4057.553 kb on + strand, within Psyr_3400 at 4057.553 kb on + strand, within Psyr_3400 at 4057.554 kb on - strand, within Psyr_3400 at 4057.554 kb on - strand, within Psyr_3400 at 4057.606 kb on + strand, within Psyr_3400 at 4057.635 kb on - strand, within Psyr_3400 at 4057.635 kb on - strand, within Psyr_3400
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 4,055,508 + Psyr_3398 0.22 +0.2 4,055,509 - Psyr_3398 0.22 +0.7 4,055,509 - Psyr_3398 0.22 -2.3 4,055,509 - Psyr_3398 0.22 -1.6 4,055,509 - Psyr_3398 0.22 -0.1 4,055,509 - Psyr_3398 0.22 +0.1 4,055,597 - Psyr_3398 0.29 +1.0 4,055,787 + Psyr_3398 0.46 +0.3 4,055,787 + Psyr_3398 0.46 -0.3 4,055,788 - Psyr_3398 0.46 +1.1 4,055,788 - Psyr_3398 0.46 -1.1 4,055,970 + Psyr_3398 0.62 -1.0 4,055,970 + Psyr_3398 0.62 -0.9 4,055,970 + Psyr_3398 0.62 -1.8 4,055,970 + Psyr_3398 0.62 +0.1 4,055,970 + Psyr_3398 0.62 +1.5 4,055,970 + Psyr_3398 0.62 +1.8 4,055,970 + Psyr_3398 0.62 +2.9 4,055,970 + Psyr_3398 0.62 +0.4 4,055,970 + Psyr_3398 0.62 +1.2 4,055,970 + Psyr_3398 0.62 +0.4 4,055,970 + Psyr_3398 0.62 +0.9 4,055,970 + Psyr_3398 0.62 +0.0 4,055,971 - Psyr_3398 0.62 +0.5 4,055,971 - Psyr_3398 0.62 +0.9 4,055,971 - Psyr_3398 0.62 +1.9 4,055,971 - Psyr_3398 0.62 -0.5 4,055,971 - Psyr_3398 0.62 -1.8 4,055,971 - Psyr_3398 0.62 +0.8 4,055,971 - Psyr_3398 0.62 +1.1 4,055,971 - Psyr_3398 0.62 +0.0 4,055,971 - Psyr_3398 0.62 +2.0 4,055,971 - Psyr_3398 0.62 +1.9 4,055,971 - Psyr_3398 0.62 +3.1 4,055,971 - Psyr_3398 0.62 -1.3 4,055,971 - Psyr_3398 0.62 -0.5 4,056,339 + +1.7 4,056,372 - +1.3 4,056,628 + Psyr_3399 0.60 +0.6 4,056,628 + Psyr_3399 0.60 +1.7 4,056,629 - Psyr_3399 0.60 +1.2 4,056,629 - Psyr_3399 0.60 -1.6 4,056,629 - Psyr_3399 0.60 +0.2 4,056,629 - Psyr_3399 0.60 +0.1 4,056,771 + +0.9 4,056,923 + Psyr_3400 0.10 -0.1 4,056,924 - Psyr_3400 0.10 -0.2 4,057,112 + Psyr_3400 0.26 +0.4 4,057,113 - Psyr_3400 0.26 +1.2 4,057,218 - Psyr_3400 0.35 -1.5 4,057,374 + Psyr_3400 0.48 -0.1 4,057,374 + Psyr_3400 0.48 -0.1 4,057,374 + Psyr_3400 0.48 +0.7 4,057,375 - Psyr_3400 0.49 -0.8 4,057,375 - Psyr_3400 0.49 +1.5 4,057,375 - Psyr_3400 0.49 +2.5 4,057,375 - Psyr_3400 0.49 -0.1 4,057,375 - Psyr_3400 0.49 +0.2 4,057,375 - Psyr_3400 0.49 +0.8 4,057,553 + Psyr_3400 0.64 +0.3 4,057,553 + Psyr_3400 0.64 +0.3 4,057,553 + Psyr_3400 0.64 -0.3 4,057,553 + Psyr_3400 0.64 +0.3 4,057,553 + Psyr_3400 0.64 +0.5 4,057,554 - Psyr_3400 0.64 +0.8 4,057,554 - Psyr_3400 0.64 +1.3 4,057,606 + Psyr_3400 0.68 -0.6 4,057,635 - Psyr_3400 0.70 -0.0 4,057,635 - Psyr_3400 0.70 +0.5
Or see this region's nucleotide sequence