Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3340

Experiment: KB with Ferulic Acid 180 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ferulic Acid 180 ug/ml
3,994,604	-				+0.5
3,994,708	+				-0.6
3,994,709	-				-4.6
3,994,801	+				+0.2
3,994,802	-				-0.0
3,994,846	+				+3.2
3,994,846	+				+2.1
3,994,847	-				+0.1
3,994,912	+				-1.1
3,994,920	+				-1.1
3,994,920	+				+0.3
3,994,920	+				+0.8
3,994,920	+				-0.6
3,994,920	+				+2.0
3,994,920	+				+0.1
3,994,920	+				+1.2
3,994,920	+				-0.2
3,994,920	+				-0.6
3,994,920	+				+1.0
3,994,920	+				+1.1
3,994,920	+				+0.9
3,994,920	+				-1.6
3,994,920	+				-0.0
3,994,921	-				-1.5
3,994,921	-				+0.6
3,994,921	-				-0.3
3,994,995	+				+0.9
3,995,003	-				+0.4
3,995,004	+				+0.3
3,995,004	+				+1.2
3,995,005	-				+0.5
3,995,005	-				+0.2
3,995,016	-				-1.4
3,995,019	+				+0.7
3,995,019	+				-1.8
3,995,112	+				-0.2
3,995,113	-				-0.2
3,995,113	-				-4.1
3,995,133	+				-0.5
3,995,234	+				-2.9
3,995,235	-				-1.8
3,995,242	+				+0.5
3,995,242	+				+2.6
3,995,270	-		Psyr_3339	0.19	-1.1
3,995,421	+				-0.8
3,995,421	+				-1.1
3,995,422	-				-1.1
3,995,422	-				-1.3
3,995,479	+				+0.0
3,995,559	+				+0.9
3,995,560	-				+0.2
3,995,560	-				-0.2
3,995,604	+				+1.3
3,995,605	-				-1.2
3,995,683	+		Psyr_3340	0.10	-0.2
3,995,683	+		Psyr_3340	0.10	-1.1
3,995,684	-		Psyr_3340	0.10	-0.8
3,995,684	-		Psyr_3340	0.10	-0.4
3,995,715	+		Psyr_3340	0.12	-0.5
3,995,715	+		Psyr_3340	0.12	-0.2
3,995,716	-		Psyr_3340	0.12	-1.6
3,996,103	+		Psyr_3340	0.40	+0.1
3,996,103	+		Psyr_3340	0.40	+0.2
3,996,103	+		Psyr_3340	0.40	-0.1
3,996,103	+		Psyr_3340	0.40	+0.8
3,996,104	-		Psyr_3340	0.40	+0.0
3,996,104	-		Psyr_3340	0.40	+0.7
3,996,154	+		Psyr_3340	0.44	-1.3
3,996,168	-		Psyr_3340	0.45	+1.4
3,996,549	+		Psyr_3340	0.72	-2.3
3,996,549	+		Psyr_3340	0.72	-1.3
3,996,549	+		Psyr_3340	0.72	-0.2
3,996,549	+		Psyr_3340	0.72	-0.9
3,996,549	+		Psyr_3340	0.72	+0.1
3,996,550	-		Psyr_3340	0.72	-0.4
3,996,550	-		Psyr_3340	0.72	+0.2
3,996,550	-		Psyr_3340	0.72	-1.0
3,996,550	-		Psyr_3340	0.72	-1.6
3,996,550	-		Psyr_3340	0.72	-0.6
3,996,550	-		Psyr_3340	0.72	-1.1
3,996,550	-		Psyr_3340	0.72	+1.4
3,996,550	-		Psyr_3340	0.72	-0.2
3,996,550	-		Psyr_3340	0.72	+0.3
3,996,550	-		Psyr_3340	0.72	+0.3
3,996,556	-		Psyr_3340	0.72	+1.6
3,996,735	+		Psyr_3340	0.85	-0.3
3,996,735	+		Psyr_3340	0.85	-1.6
3,996,735	+		Psyr_3340	0.85	+0.4
3,996,735	+		Psyr_3340	0.85	-1.9
3,996,735	+		Psyr_3340	0.85	-2.3
3,996,736	-		Psyr_3340	0.85	+0.5
3,996,736	-		Psyr_3340	0.85	+1.3
3,996,736	-		Psyr_3340	0.85	-0.5
3,996,941	+				-0.3
3,996,941	+				+1.1
3,996,941	+				-0.1
3,996,942	-				+0.4
3,996,967	-				-2.8
3,997,053	+				-2.2
3,997,053	+				+0.8
3,997,053	+				-2.1
3,997,053	+				-1.1
3,997,054	-				-1.5
3,997,054	-				-1.6
3,997,054	-				-1.3
3,997,054	-				+0.8
3,997,054	-				-1.0
3,997,054	-				+0.2
3,997,065	+				-1.5
3,997,066	-				-0.1
3,997,106	+				-0.7
3,997,106	+				+0.1
3,997,107	-				-0.4
3,997,146	+				+0.2
3,997,201	+				+0.2
3,997,202	-				-1.3
3,997,215	+		Psyr_3341	0.11	+0.5
3,997,250	+		Psyr_3341	0.24	+0.7
3,997,332	-		Psyr_3341	0.53	+1.0
3,997,332	-		Psyr_3341	0.53	+1.1
3,997,334	-		Psyr_3341	0.54	-0.1
3,997,334	-		Psyr_3341	0.54	-1.5
3,997,365	+		Psyr_3341	0.65	-0.6
3,997,366	-		Psyr_3341	0.66	+0.5
3,997,393	-		Psyr_3341	0.75	-0.5
3,997,431	+		Psyr_3341	0.89	-1.0
3,997,622	-				-0.2
3,997,671	+				-3.4
3,997,671	+				-1.1
3,997,672	-				+1.0
3,997,674	+				-0.0
3,997,674	+				+0.6
3,997,675	-				-0.8
3,997,809	-		Psyr_3342	0.58	+1.5
3,997,809	-		Psyr_3342	0.58	-1.3
3,997,840	+		Psyr_3342	0.70	-1.6
3,997,892	+		Psyr_3342	0.90	-1.5
3,997,924	+				+0.2
3,997,925	-				+1.3
3,997,925	-				-1.4
3,997,932	+				+0.5
3,997,932	+				-0.2
3,997,932	+				-2.1
3,997,932	+				+0.4
3,997,932	+				-1.5
3,997,933	-				+1.1
3,997,940	+				-2.8
3,997,941	-				-0.1
3,997,941	-				-0.9
3,997,941	-				-0.2
3,997,941	-				+0.8