Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3167

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3165 and Psyr_3166 overlap by 15 nucleotidesPsyr_3166 and Psyr_3167 are separated by 16 nucleotidesPsyr_3167 and Psyr_3168 are separated by 234 nucleotidesPsyr_3168 and Psyr_3169 are separated by 1 nucleotidesPsyr_3169 and Psyr_3170 overlap by 1 nucleotides Psyr_3165: Psyr_3165 - transcriptional regulator, LysR family, at 3,794,140 to 3,795,048 _3165 Psyr_3166: Psyr_3166 - ABC transporter, periplasmic substrate-binding protein, putative, at 3,795,034 to 3,795,813 _3166 Psyr_3167: Psyr_3167 - Citrate-proton symport, at 3,795,830 to 3,797,131 _3167 Psyr_3168: Psyr_3168 - DsrE-like protein, at 3,797,366 to 3,797,758 _3168 Psyr_3169: Psyr_3169 - DsrE-like protein, at 3,797,760 to 3,798,122 _3169 Psyr_3170: Psyr_3170 - DsrH like protein, at 3,798,122 to 3,798,421 _3170 Position (kb) 3795 3796 3797 3798Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3794.951 kb on + strand, within Psyr_3165at 3794.952 kb on - strand, within Psyr_3165at 3794.952 kb on - strand, within Psyr_3165at 3794.952 kb on - strand, within Psyr_3165at 3795.098 kb on + strandat 3795.254 kb on + strand, within Psyr_3166at 3795.254 kb on + strand, within Psyr_3166at 3795.362 kb on + strand, within Psyr_3166at 3795.362 kb on + strand, within Psyr_3166at 3795.362 kb on + strand, within Psyr_3166at 3795.362 kb on + strand, within Psyr_3166at 3795.362 kb on + strandat 3795.363 kb on - strand, within Psyr_3166at 3795.363 kb on - strand, within Psyr_3166at 3795.386 kb on + strand, within Psyr_3166at 3795.387 kb on - strand, within Psyr_3166at 3795.421 kb on - strand, within Psyr_3166at 3795.421 kb on - strand, within Psyr_3166at 3795.517 kb on + strand, within Psyr_3166at 3795.518 kb on - strand, within Psyr_3166at 3795.518 kb on - strand, within Psyr_3166at 3795.518 kb on - strand, within Psyr_3166at 3795.695 kb on + strand, within Psyr_3166at 3795.705 kb on + strand, within Psyr_3166at 3795.705 kb on + strand, within Psyr_3166at 3795.800 kb on + strandat 3795.801 kb on - strandat 3795.801 kb on - strandat 3795.801 kb on - strandat 3795.813 kb on + strandat 3795.814 kb on - strandat 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.083 kb on + strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.084 kb on - strand, within Psyr_3167at 3796.261 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.347 kb on + strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.348 kb on - strand, within Psyr_3167at 3796.362 kb on + strand, within Psyr_3167at 3796.363 kb on - strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.665 kb on + strand, within Psyr_3167at 3796.666 kb on - strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.704 kb on + strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.705 kb on - strand, within Psyr_3167at 3796.890 kb on + strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3796.891 kb on - strand, within Psyr_3167at 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.016 kb on + strandat 3797.017 kb on - strandat 3797.017 kb on - strandat 3797.017 kb on - strandat 3797.076 kb on - strandat 3797.111 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.154 kb on + strandat 3797.155 kb on - strandat 3797.155 kb on - strandat 3797.164 kb on + strandat 3797.165 kb on - strandat 3797.209 kb on + strandat 3797.209 kb on + strandat 3797.210 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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3,794,951 + Psyr_3165 0.89 +1.1
3,794,952 - Psyr_3165 0.89 -0.8
3,794,952 - Psyr_3165 0.89 +2.3
3,794,952 - Psyr_3165 0.89 +1.1
3,795,098 + -3.1
3,795,254 + Psyr_3166 0.28 -0.5
3,795,254 + Psyr_3166 0.28 +0.2
3,795,362 + Psyr_3166 0.42 +1.5
3,795,362 + Psyr_3166 0.42 +0.2
3,795,362 + Psyr_3166 0.42 -1.0
3,795,362 + Psyr_3166 0.42 +0.2
3,795,362 + +0.9
3,795,363 - Psyr_3166 0.42 +0.7
3,795,363 - Psyr_3166 0.42 -0.3
3,795,386 + Psyr_3166 0.45 +0.6
3,795,387 - Psyr_3166 0.45 -1.5
3,795,421 - Psyr_3166 0.50 -0.3
3,795,421 - Psyr_3166 0.50 +0.3
3,795,517 + Psyr_3166 0.62 +2.1
3,795,518 - Psyr_3166 0.62 -0.4
3,795,518 - Psyr_3166 0.62 +0.5
3,795,518 - Psyr_3166 0.62 -1.6
3,795,695 + Psyr_3166 0.85 -0.1
3,795,705 + Psyr_3166 0.86 -1.4
3,795,705 + Psyr_3166 0.86 +0.4
3,795,800 + -1.8
3,795,801 - -1.8
3,795,801 - +0.5
3,795,801 - +2.2
3,795,813 + -0.1
3,795,814 - +0.5
3,796,083 + Psyr_3167 0.19 +0.3
3,796,083 + Psyr_3167 0.19 +1.9
3,796,083 + Psyr_3167 0.19 -1.9
3,796,083 + Psyr_3167 0.19 -1.8
3,796,083 + Psyr_3167 0.19 +0.5
3,796,083 + Psyr_3167 0.19 -0.4
3,796,083 + Psyr_3167 0.19 -0.5
3,796,083 + Psyr_3167 0.19 -0.1
3,796,083 + Psyr_3167 0.19 -0.3
3,796,083 + Psyr_3167 0.19 +0.7
3,796,084 - Psyr_3167 0.20 -1.3
3,796,084 - Psyr_3167 0.20 +0.7
3,796,084 - Psyr_3167 0.20 +2.4
3,796,261 + Psyr_3167 0.33 +2.3
3,796,347 + Psyr_3167 0.40 -1.1
3,796,347 + Psyr_3167 0.40 +0.3
3,796,347 + Psyr_3167 0.40 +0.4
3,796,347 + Psyr_3167 0.40 +0.7
3,796,347 + Psyr_3167 0.40 +0.0
3,796,347 + Psyr_3167 0.40 -0.7
3,796,347 + Psyr_3167 0.40 -0.3
3,796,347 + Psyr_3167 0.40 +0.5
3,796,347 + Psyr_3167 0.40 +2.4
3,796,347 + Psyr_3167 0.40 +0.8
3,796,347 + Psyr_3167 0.40 -1.6
3,796,347 + Psyr_3167 0.40 +2.9
3,796,347 + Psyr_3167 0.40 +1.8
3,796,347 + Psyr_3167 0.40 +0.8
3,796,347 + Psyr_3167 0.40 +0.3
3,796,347 + Psyr_3167 0.40 +0.1
3,796,348 - Psyr_3167 0.40 +1.0
3,796,348 - Psyr_3167 0.40 +1.0
3,796,348 - Psyr_3167 0.40 +1.6
3,796,348 - Psyr_3167 0.40 +0.5
3,796,348 - Psyr_3167 0.40 +3.3
3,796,348 - Psyr_3167 0.40 -0.6
3,796,348 - Psyr_3167 0.40 -1.5
3,796,348 - Psyr_3167 0.40 +0.9
3,796,348 - Psyr_3167 0.40 +1.3
3,796,348 - Psyr_3167 0.40 -1.1
3,796,348 - Psyr_3167 0.40 -0.5
3,796,348 - Psyr_3167 0.40 +0.2
3,796,348 - Psyr_3167 0.40 -0.6
3,796,362 + Psyr_3167 0.41 -0.5
3,796,363 - Psyr_3167 0.41 -0.8
3,796,665 + Psyr_3167 0.64 +1.5
3,796,665 + Psyr_3167 0.64 +0.0
3,796,666 - Psyr_3167 0.64 -0.6
3,796,704 + Psyr_3167 0.67 -0.5
3,796,704 + Psyr_3167 0.67 +2.8
3,796,704 + Psyr_3167 0.67 -0.3
3,796,705 - Psyr_3167 0.67 +1.0
3,796,705 - Psyr_3167 0.67 -2.3
3,796,705 - Psyr_3167 0.67 +1.9
3,796,890 + Psyr_3167 0.81 +2.0
3,796,891 - Psyr_3167 0.81 +0.7
3,796,891 - Psyr_3167 0.81 -0.2
3,796,891 - Psyr_3167 0.81 -3.3
3,796,891 - Psyr_3167 0.81 +0.7
3,796,891 - Psyr_3167 0.81 +0.1
3,796,891 - Psyr_3167 0.81 +0.7
3,797,016 + -1.3
3,797,016 + +0.6
3,797,016 + +1.6
3,797,016 + -0.3
3,797,016 + +0.8
3,797,016 + -3.1
3,797,016 + +0.8
3,797,017 - +0.4
3,797,017 - -3.0
3,797,017 - -0.9
3,797,076 - -1.1
3,797,111 + +0.2
3,797,154 + -0.6
3,797,154 + -1.1
3,797,154 + +1.2
3,797,154 + +1.5
3,797,154 + -1.8
3,797,154 + -0.7
3,797,155 - -2.5
3,797,155 - +0.1
3,797,164 + -0.3
3,797,165 - +1.6
3,797,209 + +0.8
3,797,209 + -1.2
3,797,210 - -0.5

Or see this region's nucleotide sequence