Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2560 and Psyr_2561 are separated by 12 nucleotides Psyr_2561 and Psyr_2562 overlap by 4 nucleotides Psyr_2562 and Psyr_2563 are separated by 38 nucleotides Psyr_2563 and Psyr_2564 are separated by 28 nucleotides
Psyr_2560: Psyr_2560 - hypothetical protein, at 2,974,045 to 2,975,091
_2560
Psyr_2561: Psyr_2561 - hypothetical protein, at 2,975,104 to 2,975,691
_2561
Psyr_2562: Psyr_2562 - hypothetical protein, at 2,975,688 to 2,977,271
_2562
Psyr_2563: Psyr_2563 - HAD-superfamily hydrolase, subfamily IIA, at 2,977,310 to 2,978,107
_2563
Psyr_2564: Psyr_2564 - transcriptional regulator, GntR family, at 2,978,136 to 2,978,876
_2564
Position (kb)
2975
2976
2977
2978 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2974.691 kb on + strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.692 kb on - strand, within Psyr_2560 at 2974.695 kb on + strand, within Psyr_2560 at 2974.695 kb on + strand, within Psyr_2560 at 2974.696 kb on - strand, within Psyr_2560 at 2974.696 kb on - strand, within Psyr_2560 at 2974.696 kb on - strand, within Psyr_2560 at 2975.103 kb on + strand at 2975.104 kb on - strand at 2975.163 kb on + strand, within Psyr_2561 at 2975.188 kb on + strand, within Psyr_2561 at 2975.264 kb on - strand, within Psyr_2561 at 2975.264 kb on - strand, within Psyr_2561 at 2975.590 kb on + strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.591 kb on - strand, within Psyr_2561 at 2975.594 kb on + strand, within Psyr_2561 at 2975.595 kb on - strand, within Psyr_2561 at 2975.973 kb on - strand, within Psyr_2562 at 2976.396 kb on + strand, within Psyr_2562 at 2976.397 kb on - strand, within Psyr_2562 at 2976.618 kb on + strand, within Psyr_2562 at 2976.619 kb on - strand at 2976.740 kb on - strand, within Psyr_2562 at 2976.740 kb on - strand, within Psyr_2562 at 2977.147 kb on + strand at 2977.147 kb on + strand at 2977.148 kb on - strand at 2977.148 kb on - strand at 2977.148 kb on - strand at 2977.148 kb on - strand at 2977.542 kb on - strand, within Psyr_2563 at 2977.641 kb on + strand, within Psyr_2563 at 2977.822 kb on - strand, within Psyr_2563 at 2977.979 kb on - strand, within Psyr_2563 at 2977.988 kb on + strand, within Psyr_2563 at 2977.989 kb on - strand, within Psyr_2563 at 2978.106 kb on - strand at 2978.106 kb on - strand at 2978.106 kb on - strand at 2978.106 kb on - strand at 2978.109 kb on + strand at 2978.109 kb on + strand at 2978.110 kb on - strand at 2978.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 2,974,691 + Psyr_2560 0.62 +1.8 2,974,692 - Psyr_2560 0.62 -0.6 2,974,692 - Psyr_2560 0.62 -0.6 2,974,692 - Psyr_2560 0.62 -0.4 2,974,692 - Psyr_2560 0.62 +0.7 2,974,695 + Psyr_2560 0.62 +0.6 2,974,695 + Psyr_2560 0.62 +1.2 2,974,696 - Psyr_2560 0.62 +1.0 2,974,696 - Psyr_2560 0.62 +0.4 2,974,696 - Psyr_2560 0.62 -0.0 2,975,103 + +0.8 2,975,104 - +1.0 2,975,163 + Psyr_2561 0.10 +1.3 2,975,188 + Psyr_2561 0.14 +0.9 2,975,264 - Psyr_2561 0.27 -1.4 2,975,264 - Psyr_2561 0.27 -3.4 2,975,590 + Psyr_2561 0.83 +0.5 2,975,591 - Psyr_2561 0.83 -0.4 2,975,591 - Psyr_2561 0.83 +1.0 2,975,591 - Psyr_2561 0.83 +0.7 2,975,591 - Psyr_2561 0.83 +0.4 2,975,594 + Psyr_2561 0.83 -0.7 2,975,595 - Psyr_2561 0.84 -1.1 2,975,973 - Psyr_2562 0.18 -3.7 2,976,396 + Psyr_2562 0.45 +1.1 2,976,397 - Psyr_2562 0.45 -1.9 2,976,618 + Psyr_2562 0.59 +3.2 2,976,619 - -1.9 2,976,740 - Psyr_2562 0.66 -2.4 2,976,740 - Psyr_2562 0.66 -2.0 2,977,147 + -0.3 2,977,147 + +1.4 2,977,148 - -1.7 2,977,148 - +0.6 2,977,148 - +1.1 2,977,148 - +3.0 2,977,542 - Psyr_2563 0.29 +0.7 2,977,641 + Psyr_2563 0.41 +1.9 2,977,822 - Psyr_2563 0.64 +0.9 2,977,979 - Psyr_2563 0.84 +0.8 2,977,988 + Psyr_2563 0.85 -0.9 2,977,989 - Psyr_2563 0.85 +0.6 2,978,106 - -1.4 2,978,106 - -0.1 2,978,106 - +0.2 2,978,106 - -0.2 2,978,109 + -0.1 2,978,109 + -0.5 2,978,110 - -1.9 2,978,197 - +0.8
Or see this region's nucleotide sequence