Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1771

Experiment: KB with Ferulic Acid 180 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Ferulic Acid 180 ug/ml
2,014,710	+		Psyr_1770	0.48	-0.5
2,014,711	-		Psyr_1770	0.48	+0.6
2,014,711	-		Psyr_1770	0.48	-0.1
2,014,711	-		Psyr_1770	0.48	+0.7
2,014,711	-		Psyr_1770	0.48	-0.1
2,014,711	-		Psyr_1770	0.48	+0.2
2,014,971	+		Psyr_1770	0.72	+0.8
2,014,972	-		Psyr_1770	0.72	+0.5
2,015,025	+		Psyr_1770	0.77	+2.4
2,015,026	-		Psyr_1770	0.77	+0.1
2,015,314	+				-2.2
2,015,378	+				-0.4
2,015,384	+				+0.6
2,015,402	-				+0.9
2,015,412	+				-0.8
2,015,483	+				+0.1
2,015,483	+				+0.0
2,015,486	+				+0.4
2,015,486	+				+0.4
2,015,486	+				-0.3
2,015,487	-				+1.8
2,015,487	-				-0.5
2,015,487	-				-0.2
2,015,487	-				-0.2
2,015,487	-				+0.7
2,015,487	-				-0.4
2,015,498	+				-1.2
2,015,498	+				+0.8
2,015,527	+				+0.9
2,015,528	-				+0.3
2,015,528	-				-0.0
2,015,558	-				+0.1
2,015,566	+				+1.1
2,015,566	+				+0.3
2,015,566	+				+1.1
2,015,567	-				-0.1
2,015,570	+				+1.2
2,015,570	+				+0.5
2,015,570	+				+0.8
2,015,570	+				-1.0
2,015,570	+				+1.3
2,015,570	+				+0.6
2,015,570	+				+1.0
2,015,570	+				+1.3
2,015,570	+				-0.1
2,015,570	+				+1.4
2,015,570	+				+0.6
2,015,570	+				+1.7
2,015,571	-				-2.6
2,015,571	-				-1.7
2,015,571	-				+0.4
2,015,571	-				+0.6
2,015,704	+				-0.5
2,015,789	+		Psyr_1771	0.14	-1.7
2,015,789	+		Psyr_1771	0.14	+0.5
2,015,789	+		Psyr_1771	0.14	+2.4
2,015,789	+		Psyr_1771	0.14	+0.4
2,015,790	-		Psyr_1771	0.14	+1.4
2,015,790	-		Psyr_1771	0.14	-1.4
2,015,801	-		Psyr_1771	0.14	-1.0
2,015,882	+		Psyr_1771	0.19	+1.3
2,015,940	+		Psyr_1771	0.23	-0.4
2,015,940	+		Psyr_1771	0.23	+2.4
2,015,991	-		Psyr_1771	0.26	-0.3
2,015,991	-		Psyr_1771	0.26	-0.4
2,015,993	+		Psyr_1771	0.26	+0.3
2,015,993	+		Psyr_1771	0.26	+1.2
2,015,993	+		Psyr_1771	0.26	-1.6
2,015,993	+		Psyr_1771	0.26	-1.3
2,015,993	+		Psyr_1771	0.26	+0.5
2,015,993	+		Psyr_1771	0.26	-0.4
2,015,993	+		Psyr_1771	0.26	-0.1
2,015,993	+		Psyr_1771	0.26	+1.1
2,015,993	+		Psyr_1771	0.26	+1.0
2,015,993	+		Psyr_1771	0.26	+0.9
2,015,993	+		Psyr_1771	0.26	+1.4
2,015,994	-		Psyr_1771	0.26	-0.6
2,015,994	-		Psyr_1771	0.26	+0.9
2,015,994	-		Psyr_1771	0.26	-0.6
2,015,994	-		Psyr_1771	0.26	+0.5
2,015,994	-		Psyr_1771	0.26	+1.9
2,015,994	-		Psyr_1771	0.26	+0.7
2,015,994	-		Psyr_1771	0.26	+2.4
2,015,994	-		Psyr_1771	0.26	+0.5
2,015,994	-		Psyr_1771	0.26	+1.1
2,015,994	-		Psyr_1771	0.26	+0.1
2,016,129	-		Psyr_1771	0.34	-0.2
2,016,129	-				+1.2
2,016,292	+		Psyr_1771	0.44	+0.6
2,016,293	-		Psyr_1771	0.44	-0.3
2,016,294	+		Psyr_1771	0.44	-1.1
2,016,294	+		Psyr_1771	0.44	-0.4
2,016,294	+		Psyr_1771	0.44	+0.6
2,016,294	+		Psyr_1771	0.44	+0.9
2,016,295	-		Psyr_1771	0.44	-1.2
2,016,295	-		Psyr_1771	0.44	+2.6
2,016,295	-		Psyr_1771	0.44	-1.7
2,016,295	-		Psyr_1771	0.44	+0.3
2,016,517	+		Psyr_1771	0.57	-0.8
2,016,545	+		Psyr_1771	0.59	+0.4
2,016,545	+		Psyr_1771	0.59	+0.8
2,016,545	+		Psyr_1771	0.59	-1.3
2,016,545	+		Psyr_1771	0.59	-0.6
2,016,546	-		Psyr_1771	0.59	+1.7
2,016,546	-		Psyr_1771	0.59	-2.2
2,016,546	-		Psyr_1771	0.59	-0.4
2,016,707	+		Psyr_1771	0.68	+2.5
2,016,707	+		Psyr_1771	0.68	+0.9
2,016,707	+		Psyr_1771	0.68	-0.5
2,016,707	+		Psyr_1771	0.68	+0.4
2,016,707	+		Psyr_1771	0.68	-2.6
2,016,708	-		Psyr_1771	0.68	+0.6
2,016,708	-		Psyr_1771	0.68	+0.2
2,016,708	-		Psyr_1771	0.68	+0.6
2,016,708	-		Psyr_1771	0.68	+0.8
2,016,708	-		Psyr_1771	0.68	-1.0
2,016,708	-		Psyr_1771	0.68	-0.7
2,016,708	-		Psyr_1771	0.68	-1.3
2,016,911	+		Psyr_1771	0.81	+0.8
2,016,912	-		Psyr_1771	0.81	-0.4
2,016,968	+		Psyr_1771	0.84	+1.0
2,016,969	-		Psyr_1771	0.84	-1.0
2,016,980	+		Psyr_1771	0.85	+1.3
2,016,981	-		Psyr_1771	0.85	+1.0
2,017,073	+				+2.5
2,017,074	-				-0.5
2,017,074	-				-1.2
2,017,225	+				+1.5
2,017,397	-				+0.6
2,017,397	-		Psyr_1772	0.14	+1.8
2,017,397	-		Psyr_1772	0.14	-0.0
2,017,495	+		Psyr_1772	0.23	-2.0
2,017,496	-		Psyr_1772	0.23	-0.9
2,017,496	-		Psyr_1772	0.23	-0.4
2,017,496	-		Psyr_1772	0.23	-0.5
2,017,569	+		Psyr_1772	0.29	-0.1
2,017,570	-		Psyr_1772	0.29	-0.3
2,017,570	-		Psyr_1772	0.29	+0.4
2,017,574	-		Psyr_1772	0.29	+1.0
2,017,574	-		Psyr_1772	0.29	+1.2
2,017,946	+		Psyr_1772	0.61	-0.3
2,017,947	-		Psyr_1772	0.62	-1.0
2,018,020	+		Psyr_1772	0.68	-0.4
2,018,020	+		Psyr_1772	0.68	-2.1
2,018,020	+		Psyr_1772	0.68	-1.1
2,018,021	-		Psyr_1772	0.68	-0.3
2,018,021	-		Psyr_1772	0.68	+0.9
2,018,174	+		Psyr_1772	0.81	-0.2
2,018,174	+		Psyr_1772	0.81	+1.9
2,018,175	-		Psyr_1772	0.81	-1.8