Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1640

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1639 and Psyr_1640 overlap by 11 nucleotidesPsyr_1640 and Psyr_1641 are separated by 24 nucleotides Psyr_1639: Psyr_1639 - ribosomal large subunit pseudouridine synthase C, at 1,846,318 to 1,847,274 _1639 Psyr_1640: Psyr_1640 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 1,847,264 to 1,847,926 _1640 Psyr_1641: Psyr_1641 - Peptidase S49, SppA, at 1,847,951 to 1,848,949 _1641 Position (kb) 1847 1848Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.265 kb on - strandat 1846.278 kb on - strandat 1846.278 kb on - strandat 1846.306 kb on - strandat 1846.411 kb on + strandat 1846.412 kb on - strandat 1846.499 kb on - strand, within Psyr_1639at 1846.499 kb on - strand, within Psyr_1639at 1846.612 kb on + strand, within Psyr_1639at 1846.613 kb on - strand, within Psyr_1639at 1846.613 kb on - strand, within Psyr_1639at 1846.630 kb on - strand, within Psyr_1639at 1846.654 kb on - strand, within Psyr_1639at 1846.761 kb on + strand, within Psyr_1639at 1846.761 kb on + strand, within Psyr_1639at 1846.761 kb on + strand, within Psyr_1639at 1846.849 kb on + strand, within Psyr_1639at 1846.849 kb on + strand, within Psyr_1639at 1846.850 kb on - strand, within Psyr_1639at 1846.850 kb on - strand, within Psyr_1639at 1847.090 kb on + strand, within Psyr_1639at 1847.107 kb on + strand, within Psyr_1639at 1847.107 kb on + strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.108 kb on - strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.173 kb on + strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.174 kb on - strand, within Psyr_1639at 1847.211 kb on + strandat 1847.212 kb on - strandat 1847.212 kb on - strandat 1847.277 kb on - strandat 1847.486 kb on + strand, within Psyr_1640at 1847.487 kb on - strand, within Psyr_1640at 1847.487 kb on - strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.498 kb on + strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.499 kb on - strand, within Psyr_1640at 1847.651 kb on + strand, within Psyr_1640at 1847.651 kb on + strand, within Psyr_1640at 1847.652 kb on - strand, within Psyr_1640at 1847.652 kb on - strand, within Psyr_1640at 1847.652 kb on - strandat 1848.019 kb on + strandat 1848.019 kb on + strandat 1848.020 kb on - strandat 1848.020 kb on - strandat 1848.345 kb on - strand, within Psyr_1641at 1848.350 kb on + strand, within Psyr_1641at 1848.351 kb on - strand, within Psyr_1641at 1848.398 kb on + strand, within Psyr_1641at 1848.398 kb on + strand, within Psyr_1641at 1848.399 kb on - strand, within Psyr_1641at 1848.399 kb on - strand, within Psyr_1641at 1848.434 kb on + strand, within Psyr_1641at 1848.434 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.437 kb on + strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.438 kb on - strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.464 kb on + strand, within Psyr_1641at 1848.465 kb on - strand, within Psyr_1641at 1848.465 kb on - strand, within Psyr_1641at 1848.559 kb on + strand, within Psyr_1641at 1848.559 kb on + strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.560 kb on - strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.563 kb on + strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.564 kb on - strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.565 kb on + strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.801 kb on - strand, within Psyr_1641at 1848.842 kb on + strand, within Psyr_1641at 1848.842 kb on + strand, within Psyr_1641

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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1,846,265 - -0.7
1,846,265 - -1.8
1,846,265 - -0.2
1,846,265 - -0.3
1,846,265 - +1.1
1,846,265 - -0.9
1,846,278 - -1.3
1,846,278 - -1.7
1,846,306 - +0.2
1,846,411 + +0.9
1,846,412 - +0.7
1,846,499 - Psyr_1639 0.19 +1.7
1,846,499 - Psyr_1639 0.19 -0.7
1,846,612 + Psyr_1639 0.31 +0.3
1,846,613 - Psyr_1639 0.31 -0.2
1,846,613 - Psyr_1639 0.31 +0.5
1,846,630 - Psyr_1639 0.33 -1.9
1,846,654 - Psyr_1639 0.35 -1.4
1,846,761 + Psyr_1639 0.46 -0.4
1,846,761 + Psyr_1639 0.46 -0.0
1,846,761 + Psyr_1639 0.46 +0.3
1,846,849 + Psyr_1639 0.55 -0.7
1,846,849 + Psyr_1639 0.55 -0.7
1,846,850 - Psyr_1639 0.56 +1.1
1,846,850 - Psyr_1639 0.56 +0.7
1,847,090 + Psyr_1639 0.81 -0.1
1,847,107 + Psyr_1639 0.82 +1.0
1,847,107 + Psyr_1639 0.82 +1.1
1,847,108 - Psyr_1639 0.83 +0.4
1,847,108 - Psyr_1639 0.83 -0.5
1,847,108 - Psyr_1639 0.83 -1.5
1,847,173 + Psyr_1639 0.89 -1.3
1,847,173 + Psyr_1639 0.89 +2.0
1,847,173 + Psyr_1639 0.89 +0.8
1,847,173 + Psyr_1639 0.89 -2.8
1,847,173 + Psyr_1639 0.89 +0.4
1,847,174 - Psyr_1639 0.89 -2.5
1,847,174 - Psyr_1639 0.89 +2.9
1,847,174 - Psyr_1639 0.89 -1.4
1,847,174 - Psyr_1639 0.89 -3.3
1,847,174 - Psyr_1639 0.89 -0.7
1,847,174 - Psyr_1639 0.89 +0.4
1,847,174 - Psyr_1639 0.89 +1.7
1,847,174 - Psyr_1639 0.89 +0.0
1,847,174 - Psyr_1639 0.89 +1.7
1,847,174 - Psyr_1639 0.89 +0.2
1,847,174 - Psyr_1639 0.89 -0.9
1,847,174 - Psyr_1639 0.89 -0.0
1,847,174 - Psyr_1639 0.89 +0.2
1,847,174 - Psyr_1639 0.89 -0.9
1,847,174 - Psyr_1639 0.89 +1.2
1,847,174 - Psyr_1639 0.89 +0.7
1,847,211 + -0.4
1,847,212 - +0.1
1,847,212 - +0.8
1,847,277 - +3.0
1,847,486 + Psyr_1640 0.33 +3.2
1,847,487 - Psyr_1640 0.34 +2.0
1,847,487 - Psyr_1640 0.34 +1.2
1,847,498 + Psyr_1640 0.35 +0.4
1,847,498 + Psyr_1640 0.35 +3.0
1,847,498 + Psyr_1640 0.35 -1.8
1,847,498 + Psyr_1640 0.35 +0.9
1,847,498 + Psyr_1640 0.35 -1.1
1,847,498 + Psyr_1640 0.35 -2.5
1,847,498 + Psyr_1640 0.35 +2.1
1,847,498 + Psyr_1640 0.35 -0.3
1,847,498 + Psyr_1640 0.35 -1.0
1,847,498 + Psyr_1640 0.35 -2.5
1,847,498 + Psyr_1640 0.35 -0.2
1,847,498 + Psyr_1640 0.35 -0.3
1,847,498 + Psyr_1640 0.35 +0.5
1,847,498 + Psyr_1640 0.35 +1.4
1,847,498 + Psyr_1640 0.35 +1.0
1,847,499 - Psyr_1640 0.35 +1.2
1,847,499 - Psyr_1640 0.35 +1.1
1,847,499 - Psyr_1640 0.35 -0.4
1,847,499 - Psyr_1640 0.35 -0.1
1,847,499 - Psyr_1640 0.35 -2.1
1,847,499 - Psyr_1640 0.35 -2.3
1,847,651 + Psyr_1640 0.58 -0.1
1,847,651 + Psyr_1640 0.58 -0.1
1,847,652 - Psyr_1640 0.59 -1.9
1,847,652 - Psyr_1640 0.59 +0.1
1,847,652 - -1.3
1,848,019 + +1.8
1,848,019 + -0.4
1,848,020 - +0.4
1,848,020 - -0.7
1,848,345 - Psyr_1641 0.39 +0.4
1,848,350 + Psyr_1641 0.40 +1.8
1,848,351 - Psyr_1641 0.40 +3.1
1,848,398 + Psyr_1641 0.45 +1.1
1,848,398 + Psyr_1641 0.45 +0.5
1,848,399 - Psyr_1641 0.45 +2.2
1,848,399 - Psyr_1641 0.45 -1.3
1,848,434 + Psyr_1641 0.48 +1.2
1,848,434 + Psyr_1641 0.48 +0.2
1,848,437 + Psyr_1641 0.49 +0.4
1,848,437 + Psyr_1641 0.49 -0.9
1,848,437 + Psyr_1641 0.49 +1.4
1,848,437 + Psyr_1641 0.49 +0.1
1,848,437 + Psyr_1641 0.49 -2.2
1,848,437 + Psyr_1641 0.49 +1.1
1,848,437 + Psyr_1641 0.49 +0.7
1,848,437 + Psyr_1641 0.49 +0.9
1,848,437 + Psyr_1641 0.49 -0.4
1,848,437 + Psyr_1641 0.49 +0.5
1,848,437 + Psyr_1641 0.49 +0.7
1,848,438 - Psyr_1641 0.49 +0.1
1,848,438 - Psyr_1641 0.49 -1.5
1,848,438 - Psyr_1641 0.49 +1.1
1,848,438 - Psyr_1641 0.49 +1.5
1,848,438 - Psyr_1641 0.49 +0.5
1,848,438 - Psyr_1641 0.49 +0.7
1,848,464 + Psyr_1641 0.51 +0.1
1,848,464 + Psyr_1641 0.51 -0.6
1,848,464 + Psyr_1641 0.51 +0.6
1,848,465 - Psyr_1641 0.51 -0.6
1,848,465 - Psyr_1641 0.51 -1.7
1,848,559 + Psyr_1641 0.61 -0.3
1,848,559 + Psyr_1641 0.61 +1.9
1,848,560 - Psyr_1641 0.61 -0.3
1,848,560 - Psyr_1641 0.61 +1.0
1,848,560 - Psyr_1641 0.61 -0.3
1,848,563 + Psyr_1641 0.61 -0.5
1,848,563 + Psyr_1641 0.61 -0.8
1,848,563 + Psyr_1641 0.61 +0.5
1,848,563 + Psyr_1641 0.61 +0.1
1,848,563 + Psyr_1641 0.61 +1.1
1,848,563 + Psyr_1641 0.61 +1.4
1,848,563 + Psyr_1641 0.61 +3.5
1,848,563 + Psyr_1641 0.61 +0.7
1,848,563 + Psyr_1641 0.61 +0.3
1,848,564 - Psyr_1641 0.61 -0.6
1,848,564 - Psyr_1641 0.61 -0.2
1,848,564 - Psyr_1641 0.61 -4.1
1,848,564 - Psyr_1641 0.61 +0.2
1,848,564 - Psyr_1641 0.61 +1.2
1,848,564 - Psyr_1641 0.61 +1.2
1,848,565 + Psyr_1641 0.61 -1.9
1,848,565 + Psyr_1641 0.61 -1.3
1,848,565 + Psyr_1641 0.61 +0.5
1,848,801 - Psyr_1641 0.85 +0.2
1,848,801 - Psyr_1641 0.85 -0.9
1,848,801 - Psyr_1641 0.85 +0.8
1,848,801 - Psyr_1641 0.85 -0.4
1,848,801 - Psyr_1641 0.85 +1.5
1,848,801 - Psyr_1641 0.85 +0.5
1,848,801 - Psyr_1641 0.85 -3.0
1,848,842 + Psyr_1641 0.89 -0.4
1,848,842 + Psyr_1641 0.89 -0.3

Or see this region's nucleotide sequence