Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1324

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1322 and Psyr_1323 are separated by 133 nucleotidesPsyr_1323 and Psyr_1324 are separated by 36 nucleotidesPsyr_1324 and Psyr_1325 are separated by 96 nucleotidesPsyr_1325 and Psyr_1326 are separated by 71 nucleotides Psyr_1322: Psyr_1322 - Protein of unknown function DUF72, at 1,500,043 to 1,500,906 _1322 Psyr_1323: Psyr_1323 - Extensin-like, C-terminal, at 1,501,040 to 1,501,729 _1323 Psyr_1324: Psyr_1324 - conserved hypothetical protein, at 1,501,766 to 1,502,389 _1324 Psyr_1325: Psyr_1325 - Protein of unknown function DUF548, at 1,502,486 to 1,503,295 _1325 Psyr_1326: Psyr_1326 - conserved hypothetical protein, at 1,503,367 to 1,504,056 _1326 Position (kb) 1501 1502 1503Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1500.957 kb on - strandat 1501.056 kb on + strandat 1501.057 kb on - strandat 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.178 kb on + strand, within Psyr_1323at 1501.179 kb on - strand, within Psyr_1323at 1501.179 kb on - strand, within Psyr_1323at 1501.179 kb on - strand, within Psyr_1323at 1501.297 kb on + strand, within Psyr_1323at 1501.298 kb on - strand, within Psyr_1323at 1501.377 kb on + strand, within Psyr_1323at 1501.377 kb on + strand, within Psyr_1323at 1501.378 kb on - strand, within Psyr_1323at 1501.378 kb on - strand, within Psyr_1323at 1501.471 kb on + strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.472 kb on - strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.475 kb on + strand, within Psyr_1323at 1501.476 kb on - strand, within Psyr_1323at 1501.476 kb on - strand, within Psyr_1323at 1501.572 kb on + strand, within Psyr_1323at 1501.573 kb on - strand, within Psyr_1323at 1501.573 kb on - strand, within Psyr_1323at 1501.573 kb on - strand, within Psyr_1323at 1501.648 kb on + strand, within Psyr_1323at 1501.667 kb on + strandat 1501.667 kb on + strandat 1501.668 kb on - strandat 1501.668 kb on - strandat 1501.767 kb on + strandat 1501.767 kb on + strandat 1501.768 kb on - strandat 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.146 kb on + strand, within Psyr_1324at 1502.147 kb on - strand, within Psyr_1324at 1502.147 kb on - strand, within Psyr_1324at 1502.204 kb on + strand, within Psyr_1324at 1502.204 kb on + strand, within Psyr_1324at 1502.204 kb on + strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.205 kb on - strand, within Psyr_1324at 1502.358 kb on + strandat 1502.389 kb on + strandat 1502.389 kb on + strandat 1502.389 kb on + strandat 1502.390 kb on - strandat 1502.390 kb on - strandat 1502.399 kb on + strandat 1502.400 kb on - strandat 1502.429 kb on + strandat 1502.460 kb on + strandat 1502.479 kb on - strandat 1503.015 kb on - strand, within Psyr_1325at 1503.015 kb on - strand, within Psyr_1325

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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1,500,957 - -0.7
1,501,056 + +1.8
1,501,057 - -0.7
1,501,178 + Psyr_1323 0.20 -1.2
1,501,178 + Psyr_1323 0.20 +0.7
1,501,178 + Psyr_1323 0.20 -1.1
1,501,178 + Psyr_1323 0.20 +1.0
1,501,178 + Psyr_1323 0.20 +0.8
1,501,179 - Psyr_1323 0.20 +0.3
1,501,179 - Psyr_1323 0.20 +1.2
1,501,179 - Psyr_1323 0.20 +0.5
1,501,297 + Psyr_1323 0.37 +0.6
1,501,298 - Psyr_1323 0.37 -2.5
1,501,377 + Psyr_1323 0.49 -1.6
1,501,377 + Psyr_1323 0.49 +0.8
1,501,378 - Psyr_1323 0.49 +0.4
1,501,378 - Psyr_1323 0.49 +0.4
1,501,471 + Psyr_1323 0.62 +3.1
1,501,472 - Psyr_1323 0.63 -0.1
1,501,472 - Psyr_1323 0.63 +1.8
1,501,472 - Psyr_1323 0.63 -1.3
1,501,472 - Psyr_1323 0.63 -1.2
1,501,472 - Psyr_1323 0.63 +0.4
1,501,475 + Psyr_1323 0.63 -0.2
1,501,475 + Psyr_1323 0.63 +2.3
1,501,475 + Psyr_1323 0.63 -0.2
1,501,475 + Psyr_1323 0.63 -2.1
1,501,475 + Psyr_1323 0.63 +0.7
1,501,475 + Psyr_1323 0.63 -0.8
1,501,475 + Psyr_1323 0.63 +0.3
1,501,475 + Psyr_1323 0.63 -1.1
1,501,475 + Psyr_1323 0.63 -1.6
1,501,475 + Psyr_1323 0.63 -1.0
1,501,476 - Psyr_1323 0.63 -0.6
1,501,476 - Psyr_1323 0.63 +1.5
1,501,572 + Psyr_1323 0.77 -0.6
1,501,573 - Psyr_1323 0.77 +0.8
1,501,573 - Psyr_1323 0.77 -0.7
1,501,573 - Psyr_1323 0.77 -0.2
1,501,648 + Psyr_1323 0.88 -1.6
1,501,667 + +0.2
1,501,667 + -0.2
1,501,668 - -0.4
1,501,668 - +0.2
1,501,767 + +1.4
1,501,767 + +1.5
1,501,768 - +0.2
1,502,146 + Psyr_1324 0.61 -0.3
1,502,146 + Psyr_1324 0.61 +0.0
1,502,146 + Psyr_1324 0.61 -0.1
1,502,146 + Psyr_1324 0.61 -3.7
1,502,146 + Psyr_1324 0.61 -0.8
1,502,147 - Psyr_1324 0.61 -3.1
1,502,147 - Psyr_1324 0.61 -1.6
1,502,204 + Psyr_1324 0.70 +1.5
1,502,204 + Psyr_1324 0.70 -1.4
1,502,204 + Psyr_1324 0.70 -2.8
1,502,205 - Psyr_1324 0.70 -0.3
1,502,205 - Psyr_1324 0.70 -2.6
1,502,205 - Psyr_1324 0.70 -0.1
1,502,205 - Psyr_1324 0.70 +0.3
1,502,205 - Psyr_1324 0.70 +1.7
1,502,205 - Psyr_1324 0.70 -1.7
1,502,358 + +1.7
1,502,389 + +0.9
1,502,389 + +1.8
1,502,389 + +1.5
1,502,390 - +0.3
1,502,390 - -1.6
1,502,399 + +0.8
1,502,400 - -0.1
1,502,429 + -2.6
1,502,460 + -0.8
1,502,479 - +1.5
1,503,015 - Psyr_1325 0.65 +0.7
1,503,015 - Psyr_1325 0.65 -0.2

Or see this region's nucleotide sequence