Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1064 and Psyr_1065 are separated by 202 nucleotides Psyr_1065 and Psyr_1066 are separated by 294 nucleotides
Psyr_1064: Psyr_1064 - Protein of unknown function DUF328, at 1,206,856 to 1,207,635
_1064
Psyr_1065: Psyr_1065 - Polysaccharide deacetylase, at 1,207,838 to 1,209,016
_1065
Psyr_1066: Psyr_1066 - PhoH-like protein, at 1,209,311 to 1,210,705
_1066
Position (kb) 1207
1208
1209
1210 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1206.931 kb on + strand at 1206.931 kb on + strand at 1206.931 kb on + strand at 1206.932 kb on - strand at 1206.932 kb on - strand at 1206.946 kb on + strand, within Psyr_1064 at 1206.946 kb on + strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.947 kb on - strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.976 kb on + strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1206.977 kb on - strand, within Psyr_1064 at 1207.035 kb on - strand, within Psyr_1064 at 1207.373 kb on + strand, within Psyr_1064 at 1207.373 kb on + strand, within Psyr_1064 at 1207.374 kb on - strand, within Psyr_1064 at 1207.374 kb on - strand, within Psyr_1064 at 1207.374 kb on - strand, within Psyr_1064 at 1207.556 kb on + strand, within Psyr_1064 at 1207.557 kb on - strand, within Psyr_1064 at 1207.557 kb on - strand, within Psyr_1064 at 1207.694 kb on + strand at 1207.695 kb on - strand at 1207.695 kb on - strand at 1207.695 kb on - strand at 1207.695 kb on - strand at 1207.695 kb on - strand at 1207.695 kb on - strand at 1207.763 kb on + strand at 1207.763 kb on + strand at 1207.763 kb on + strand at 1207.763 kb on + strand at 1207.763 kb on + strand at 1207.764 kb on - strand at 1207.764 kb on - strand at 1207.764 kb on - strand at 1207.764 kb on - strand at 1207.764 kb on - strand at 1207.779 kb on + strand at 1207.779 kb on + strand at 1207.779 kb on + strand at 1207.779 kb on + strand at 1207.780 kb on - strand at 1207.780 kb on - strand at 1207.780 kb on - strand at 1207.780 kb on - strand at 1207.780 kb on - strand at 1207.780 kb on - strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.786 kb on + strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.787 kb on - strand at 1207.851 kb on + strand at 1207.852 kb on - strand at 1208.006 kb on + strand, within Psyr_1065 at 1208.006 kb on + strand, within Psyr_1065 at 1208.006 kb on + strand, within Psyr_1065 at 1208.123 kb on + strand, within Psyr_1065 at 1208.124 kb on - strand, within Psyr_1065 at 1208.213 kb on + strand, within Psyr_1065 at 1208.213 kb on + strand, within Psyr_1065 at 1208.213 kb on + strand, within Psyr_1065 at 1208.214 kb on - strand, within Psyr_1065 at 1208.220 kb on + strand, within Psyr_1065 at 1208.237 kb on + strand, within Psyr_1065 at 1208.237 kb on + strand, within Psyr_1065 at 1208.237 kb on + strand, within Psyr_1065 at 1208.237 kb on + strand, within Psyr_1065 at 1208.238 kb on - strand, within Psyr_1065 at 1208.238 kb on - strand, within Psyr_1065 at 1208.238 kb on - strand, within Psyr_1065 at 1208.238 kb on - strand, within Psyr_1065 at 1208.342 kb on + strand, within Psyr_1065 at 1208.342 kb on + strand, within Psyr_1065 at 1208.343 kb on - strand, within Psyr_1065 at 1208.550 kb on - strand, within Psyr_1065 at 1208.694 kb on - strand, within Psyr_1065 at 1208.857 kb on - strand, within Psyr_1065 at 1208.950 kb on + strand at 1208.950 kb on + strand at 1209.050 kb on - strand at 1209.063 kb on - strand at 1209.063 kb on - strand at 1209.079 kb on - strand at 1209.097 kb on + strand at 1209.147 kb on + strand at 1209.148 kb on - strand at 1209.150 kb on + strand at 1209.150 kb on + strand at 1209.150 kb on + strand at 1209.151 kb on - strand at 1209.151 kb on - strand at 1209.151 kb on - strand at 1209.157 kb on - strand at 1209.265 kb on - strand at 1209.294 kb on + strand at 1209.294 kb on + strand at 1209.295 kb on - strand at 1209.357 kb on - strand at 1209.357 kb on - strand at 1209.357 kb on - strand at 1209.375 kb on + strand at 1209.375 kb on + strand at 1209.376 kb on - strand at 1209.376 kb on - strand at 1209.376 kb on - strand at 1209.376 kb on - strand at 1209.580 kb on + strand, within Psyr_1066 at 1209.581 kb on - strand, within Psyr_1066 at 1209.599 kb on + strand, within Psyr_1066 at 1209.788 kb on + strand, within Psyr_1066 at 1209.949 kb on + strand, within Psyr_1066 at 1209.950 kb on - strand, within Psyr_1066 at 1209.950 kb on - strand, within Psyr_1066 at 1209.950 kb on - strand, within Psyr_1066 at 1209.984 kb on + strand, within Psyr_1066
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 1,206,931 + +2.1 1,206,931 + -0.0 1,206,931 + -2.4 1,206,932 - +0.4 1,206,932 - -0.8 1,206,946 + Psyr_1064 0.12 +0.4 1,206,946 + Psyr_1064 0.12 -0.7 1,206,947 - Psyr_1064 0.12 +0.9 1,206,947 - Psyr_1064 0.12 -1.8 1,206,947 - Psyr_1064 0.12 +1.0 1,206,947 - Psyr_1064 0.12 -1.8 1,206,947 - Psyr_1064 0.12 +0.3 1,206,976 + Psyr_1064 0.15 +0.0 1,206,976 + Psyr_1064 0.15 +1.3 1,206,976 + Psyr_1064 0.15 -0.8 1,206,977 - Psyr_1064 0.16 -1.7 1,206,977 - Psyr_1064 0.16 -0.4 1,206,977 - Psyr_1064 0.16 +1.7 1,206,977 - Psyr_1064 0.16 -0.6 1,206,977 - Psyr_1064 0.16 -1.5 1,206,977 - Psyr_1064 0.16 +1.9 1,206,977 - Psyr_1064 0.16 +0.5 1,207,035 - Psyr_1064 0.23 -0.3 1,207,373 + Psyr_1064 0.66 -1.0 1,207,373 + Psyr_1064 0.66 +1.0 1,207,374 - Psyr_1064 0.66 +0.6 1,207,374 - Psyr_1064 0.66 -3.1 1,207,374 - Psyr_1064 0.66 -0.6 1,207,556 + Psyr_1064 0.90 -0.4 1,207,557 - Psyr_1064 0.90 +1.3 1,207,557 - Psyr_1064 0.90 +0.3 1,207,694 + -1.8 1,207,695 - +1.1 1,207,695 - +1.1 1,207,695 - -0.5 1,207,695 - +1.4 1,207,695 - +0.2 1,207,695 - -1.6 1,207,763 + +0.8 1,207,763 + -1.0 1,207,763 + +1.5 1,207,763 + +0.3 1,207,763 + +0.2 1,207,764 - -2.6 1,207,764 - +0.2 1,207,764 - +0.1 1,207,764 - +0.8 1,207,764 - -1.0 1,207,779 + -3.4 1,207,779 + -0.2 1,207,779 + -0.5 1,207,779 + +0.7 1,207,780 - +2.4 1,207,780 - +1.3 1,207,780 - +2.0 1,207,780 - -1.5 1,207,780 - -1.2 1,207,780 - -0.6 1,207,786 + -0.7 1,207,786 + +0.4 1,207,786 + -1.0 1,207,786 + +0.1 1,207,786 + -0.2 1,207,786 + -1.0 1,207,786 + -1.0 1,207,786 + +0.1 1,207,786 + -0.7 1,207,787 - +0.4 1,207,787 - +1.4 1,207,787 - +0.6 1,207,787 - +1.8 1,207,787 - -1.2 1,207,787 - +0.2 1,207,787 - -1.4 1,207,787 - -0.5 1,207,851 + +0.4 1,207,852 - +0.3 1,208,006 + Psyr_1065 0.14 -0.1 1,208,006 + Psyr_1065 0.14 -1.1 1,208,006 + Psyr_1065 0.14 -0.2 1,208,123 + Psyr_1065 0.24 -1.1 1,208,124 - Psyr_1065 0.24 -2.9 1,208,213 + Psyr_1065 0.32 +0.2 1,208,213 + Psyr_1065 0.32 -0.8 1,208,213 + Psyr_1065 0.32 -0.2 1,208,214 - Psyr_1065 0.32 +0.7 1,208,220 + Psyr_1065 0.32 +0.2 1,208,237 + Psyr_1065 0.34 -0.5 1,208,237 + Psyr_1065 0.34 -0.4 1,208,237 + Psyr_1065 0.34 -0.3 1,208,237 + Psyr_1065 0.34 -1.8 1,208,238 - Psyr_1065 0.34 -0.9 1,208,238 - Psyr_1065 0.34 -1.0 1,208,238 - Psyr_1065 0.34 +2.1 1,208,238 - Psyr_1065 0.34 +0.6 1,208,342 + Psyr_1065 0.43 -0.8 1,208,342 + Psyr_1065 0.43 -3.0 1,208,343 - Psyr_1065 0.43 -1.1 1,208,550 - Psyr_1065 0.60 +1.2 1,208,694 - Psyr_1065 0.73 +0.2 1,208,857 - Psyr_1065 0.86 -0.6 1,208,950 + -3.9 1,208,950 + +0.4 1,209,050 - +0.2 1,209,063 - -2.1 1,209,063 - +1.0 1,209,079 - +0.3 1,209,097 + +0.3 1,209,147 + -0.2 1,209,148 - -0.2 1,209,150 + +0.7 1,209,150 + +0.8 1,209,150 + +1.4 1,209,151 - +0.2 1,209,151 - -0.7 1,209,151 - +0.6 1,209,157 - +1.8 1,209,265 - -0.1 1,209,294 + +0.4 1,209,294 + +0.3 1,209,295 - +4.5 1,209,357 - -0.4 1,209,357 - +0.8 1,209,357 - -2.2 1,209,375 + -0.9 1,209,375 + +0.3 1,209,376 - -0.4 1,209,376 - -0.5 1,209,376 - +0.5 1,209,376 - -0.8 1,209,580 + Psyr_1066 0.19 +0.0 1,209,581 - Psyr_1066 0.19 -0.3 1,209,599 + Psyr_1066 0.21 +0.7 1,209,788 + Psyr_1066 0.34 +3.1 1,209,949 + Psyr_1066 0.46 +1.2 1,209,950 - Psyr_1066 0.46 +0.4 1,209,950 - Psyr_1066 0.46 +1.4 1,209,950 - Psyr_1066 0.46 -0.3 1,209,984 + Psyr_1066 0.48 +2.8
Or see this region's nucleotide sequence