Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0993

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0992 and Psyr_0993 are separated by 176 nucleotidesPsyr_0993 and Psyr_0994 are separated by 24 nucleotides Psyr_0992: Psyr_0992 - Protein of unknown function DUF1329, at 1,124,101 to 1,125,471 _0992 Psyr_0993: Psyr_0993 - transcriptional regulator, LuxR family, at 1,125,648 to 1,128,410 _0993 Psyr_0994: Psyr_0994 - Metal-dependent phosphohydrolase, HD subdomain protein, at 1,128,435 to 1,129,616 _0994 Position (kb) 1125 1126 1127 1128 1129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1124.701 kb on + strand, within Psyr_0992at 1124.701 kb on + strand, within Psyr_0992at 1124.701 kb on + strand, within Psyr_0992at 1124.701 kb on + strand, within Psyr_0992at 1124.702 kb on - strand, within Psyr_0992at 1124.702 kb on - strand, within Psyr_0992at 1124.776 kb on + strand, within Psyr_0992at 1124.776 kb on + strand, within Psyr_0992at 1124.777 kb on - strand, within Psyr_0992at 1124.777 kb on - strand, within Psyr_0992at 1124.777 kb on - strand, within Psyr_0992at 1124.831 kb on + strand, within Psyr_0992at 1124.831 kb on + strand, within Psyr_0992at 1124.832 kb on - strand, within Psyr_0992at 1124.832 kb on - strand, within Psyr_0992at 1124.878 kb on + strand, within Psyr_0992at 1124.878 kb on + strand, within Psyr_0992at 1124.878 kb on + strand, within Psyr_0992at 1124.879 kb on - strand, within Psyr_0992at 1124.924 kb on - strand, within Psyr_0992at 1124.924 kb on - strand, within Psyr_0992at 1124.980 kb on + strand, within Psyr_0992at 1124.980 kb on + strand, within Psyr_0992at 1124.980 kb on + strand, within Psyr_0992at 1124.980 kb on + strand, within Psyr_0992at 1124.980 kb on + strand, within Psyr_0992at 1124.980 kb on + strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1124.981 kb on - strand, within Psyr_0992at 1125.002 kb on - strand, within Psyr_0992at 1125.034 kb on + strand, within Psyr_0992at 1125.034 kb on + strand, within Psyr_0992at 1125.035 kb on - strand, within Psyr_0992at 1125.035 kb on - strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.183 kb on + strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.184 kb on - strand, within Psyr_0992at 1125.187 kb on + strand, within Psyr_0992at 1125.187 kb on + strand, within Psyr_0992at 1125.187 kb on + strand, within Psyr_0992at 1125.187 kb on + strand, within Psyr_0992at 1125.187 kb on + strand, within Psyr_0992at 1125.187 kb on + strand, within Psyr_0992at 1125.188 kb on - strand, within Psyr_0992at 1125.188 kb on - strand, within Psyr_0992at 1125.188 kb on - strand, within Psyr_0992at 1125.188 kb on - strand, within Psyr_0992at 1125.247 kb on + strand, within Psyr_0992at 1125.248 kb on - strand, within Psyr_0992at 1125.298 kb on + strand, within Psyr_0992at 1125.298 kb on + strand, within Psyr_0992at 1125.302 kb on - strand, within Psyr_0992at 1125.314 kb on + strand, within Psyr_0992at 1125.315 kb on - strand, within Psyr_0992at 1125.315 kb on - strand, within Psyr_0992at 1125.315 kb on - strand, within Psyr_0992at 1125.315 kb on - strand, within Psyr_0992at 1125.341 kb on - strandat 1125.362 kb on - strandat 1125.362 kb on - strandat 1125.400 kb on + strandat 1125.473 kb on - strandat 1125.563 kb on + strandat 1125.563 kb on + strandat 1125.563 kb on + strandat 1125.563 kb on + strandat 1125.563 kb on + strandat 1125.563 kb on + strandat 1125.564 kb on - strandat 1125.564 kb on - strandat 1125.564 kb on - strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.565 kb on + strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.566 kb on - strandat 1125.668 kb on - strandat 1125.771 kb on + strandat 1125.913 kb on + strandat 1125.913 kb on + strandat 1125.914 kb on - strandat 1125.914 kb on - strandat 1126.127 kb on - strand, within Psyr_0993at 1126.127 kb on - strand, within Psyr_0993at 1126.127 kb on - strand, within Psyr_0993at 1126.127 kb on - strand, within Psyr_0993at 1126.198 kb on + strand, within Psyr_0993at 1126.198 kb on + strand, within Psyr_0993at 1126.198 kb on + strand, within Psyr_0993at 1126.199 kb on - strand, within Psyr_0993at 1126.503 kb on + strand, within Psyr_0993at 1126.503 kb on + strand, within Psyr_0993at 1126.503 kb on + strand, within Psyr_0993at 1126.983 kb on + strand, within Psyr_0993at 1127.160 kb on + strand, within Psyr_0993at 1127.161 kb on - strand, within Psyr_0993at 1127.161 kb on - strand, within Psyr_0993at 1127.294 kb on - strand, within Psyr_0993at 1127.343 kb on + strand, within Psyr_0993at 1127.475 kb on + strand, within Psyr_0993at 1127.475 kb on + strand, within Psyr_0993at 1127.475 kb on + strand, within Psyr_0993at 1127.475 kb on + strand, within Psyr_0993at 1127.475 kb on + strand, within Psyr_0993at 1127.476 kb on - strand, within Psyr_0993at 1127.476 kb on - strand, within Psyr_0993at 1127.476 kb on - strand, within Psyr_0993at 1127.484 kb on + strand, within Psyr_0993at 1127.484 kb on + strand, within Psyr_0993at 1127.485 kb on - strand, within Psyr_0993at 1127.527 kb on + strand, within Psyr_0993at 1127.528 kb on - strand, within Psyr_0993at 1127.694 kb on + strand, within Psyr_0993at 1127.695 kb on - strand, within Psyr_0993at 1127.695 kb on - strand, within Psyr_0993at 1127.695 kb on - strand, within Psyr_0993at 1127.695 kb on - strand, within Psyr_0993at 1127.697 kb on + strand, within Psyr_0993at 1127.711 kb on + strand, within Psyr_0993at 1127.712 kb on - strand, within Psyr_0993at 1127.793 kb on + strand, within Psyr_0993at 1127.793 kb on + strand, within Psyr_0993at 1127.793 kb on + strand, within Psyr_0993at 1127.793 kb on + strand, within Psyr_0993at 1127.794 kb on - strand, within Psyr_0993at 1127.794 kb on - strand, within Psyr_0993at 1127.794 kb on - strand, within Psyr_0993at 1127.794 kb on - strand, within Psyr_0993at 1127.869 kb on + strand, within Psyr_0993at 1128.661 kb on - strand, within Psyr_0994at 1128.683 kb on + strand, within Psyr_0994at 1128.684 kb on - strand, within Psyr_0994at 1128.684 kb on - strand, within Psyr_0994at 1128.684 kb on - strand, within Psyr_0994at 1128.684 kb on - strand, within Psyr_0994at 1128.684 kb on - strandat 1128.811 kb on + strand, within Psyr_0994at 1128.811 kb on + strand, within Psyr_0994at 1128.811 kb on + strand, within Psyr_0994at 1128.811 kb on + strand, within Psyr_0994at 1128.811 kb on + strand, within Psyr_0994at 1128.812 kb on - strand, within Psyr_0994at 1128.812 kb on - strand, within Psyr_0994at 1128.812 kb on - strand, within Psyr_0994at 1128.812 kb on - strand, within Psyr_0994at 1128.812 kb on - strand, within Psyr_0994at 1128.812 kb on - strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.168 kb on + strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.169 kb on - strand, within Psyr_0994at 1129.174 kb on + strand, within Psyr_0994at 1129.174 kb on + strand, within Psyr_0994at 1129.175 kb on - strand, within Psyr_0994at 1129.389 kb on - strand, within Psyr_0994

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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1,124,701 + Psyr_0992 0.44 +0.5
1,124,701 + Psyr_0992 0.44 -0.1
1,124,701 + Psyr_0992 0.44 -0.4
1,124,701 + Psyr_0992 0.44 -0.0
1,124,702 - Psyr_0992 0.44 -0.1
1,124,702 - Psyr_0992 0.44 +0.1
1,124,776 + Psyr_0992 0.49 +0.4
1,124,776 + Psyr_0992 0.49 -0.2
1,124,777 - Psyr_0992 0.49 -3.0
1,124,777 - Psyr_0992 0.49 -2.7
1,124,777 - Psyr_0992 0.49 -0.5
1,124,831 + Psyr_0992 0.53 -0.2
1,124,831 + Psyr_0992 0.53 -0.3
1,124,832 - Psyr_0992 0.53 +1.1
1,124,832 - Psyr_0992 0.53 +0.2
1,124,878 + Psyr_0992 0.57 +1.8
1,124,878 + Psyr_0992 0.57 -2.0
1,124,878 + Psyr_0992 0.57 +0.3
1,124,879 - Psyr_0992 0.57 +1.5
1,124,924 - Psyr_0992 0.60 +0.2
1,124,924 - Psyr_0992 0.60 +0.1
1,124,980 + Psyr_0992 0.64 -0.7
1,124,980 + Psyr_0992 0.64 -1.8
1,124,980 + Psyr_0992 0.64 -1.7
1,124,980 + Psyr_0992 0.64 -0.9
1,124,980 + Psyr_0992 0.64 +0.9
1,124,980 + Psyr_0992 0.64 -0.5
1,124,981 - Psyr_0992 0.64 +0.8
1,124,981 - Psyr_0992 0.64 -1.5
1,124,981 - Psyr_0992 0.64 -2.0
1,124,981 - Psyr_0992 0.64 +0.9
1,124,981 - Psyr_0992 0.64 -1.5
1,124,981 - Psyr_0992 0.64 +0.5
1,124,981 - Psyr_0992 0.64 -1.8
1,125,002 - Psyr_0992 0.66 -0.2
1,125,034 + Psyr_0992 0.68 -1.4
1,125,034 + Psyr_0992 0.68 -0.9
1,125,035 - Psyr_0992 0.68 -2.5
1,125,035 - Psyr_0992 0.68 -2.7
1,125,183 + Psyr_0992 0.79 +0.1
1,125,183 + Psyr_0992 0.79 +1.3
1,125,183 + Psyr_0992 0.79 +0.4
1,125,183 + Psyr_0992 0.79 -0.2
1,125,183 + Psyr_0992 0.79 -0.3
1,125,183 + Psyr_0992 0.79 -1.0
1,125,183 + Psyr_0992 0.79 +0.2
1,125,183 + Psyr_0992 0.79 +0.6
1,125,184 - Psyr_0992 0.79 -0.6
1,125,184 - Psyr_0992 0.79 -2.7
1,125,184 - Psyr_0992 0.79 +0.8
1,125,184 - Psyr_0992 0.79 +0.3
1,125,184 - Psyr_0992 0.79 +0.4
1,125,184 - Psyr_0992 0.79 -1.1
1,125,184 - Psyr_0992 0.79 +1.5
1,125,187 + Psyr_0992 0.79 -0.7
1,125,187 + Psyr_0992 0.79 -0.2
1,125,187 + Psyr_0992 0.79 -0.2
1,125,187 + Psyr_0992 0.79 +1.2
1,125,187 + Psyr_0992 0.79 +0.8
1,125,187 + Psyr_0992 0.79 -1.0
1,125,188 - Psyr_0992 0.79 -2.2
1,125,188 - Psyr_0992 0.79 +1.8
1,125,188 - Psyr_0992 0.79 +0.8
1,125,188 - Psyr_0992 0.79 +1.1
1,125,247 + Psyr_0992 0.84 -0.2
1,125,248 - Psyr_0992 0.84 -2.2
1,125,298 + Psyr_0992 0.87 +0.3
1,125,298 + Psyr_0992 0.87 +0.8
1,125,302 - Psyr_0992 0.88 -1.8
1,125,314 + Psyr_0992 0.88 +0.0
1,125,315 - Psyr_0992 0.89 -0.2
1,125,315 - Psyr_0992 0.89 +1.1
1,125,315 - Psyr_0992 0.89 -2.4
1,125,315 - Psyr_0992 0.89 +1.0
1,125,341 - +0.5
1,125,362 - -1.1
1,125,362 - +1.1
1,125,400 + +0.8
1,125,473 - +0.4
1,125,563 + +0.2
1,125,563 + +0.4
1,125,563 + -1.4
1,125,563 + -0.8
1,125,563 + +0.3
1,125,563 + -0.3
1,125,564 - +0.4
1,125,564 - +1.3
1,125,564 - -0.4
1,125,565 + +0.1
1,125,565 + -1.7
1,125,565 + -0.1
1,125,565 + -1.5
1,125,565 + +0.5
1,125,565 + -0.6
1,125,565 + -2.0
1,125,565 + +0.5
1,125,565 + +0.2
1,125,565 + -0.2
1,125,565 + +0.6
1,125,565 + -3.1
1,125,566 - -1.0
1,125,566 - +0.5
1,125,566 - -0.1
1,125,566 - -0.8
1,125,566 - +0.2
1,125,566 - +0.3
1,125,566 - +0.8
1,125,566 - -0.8
1,125,668 - +0.6
1,125,771 + -2.8
1,125,913 + +1.7
1,125,913 + +1.3
1,125,914 - +1.4
1,125,914 - +0.3
1,126,127 - Psyr_0993 0.17 +0.1
1,126,127 - Psyr_0993 0.17 +1.4
1,126,127 - Psyr_0993 0.17 +0.5
1,126,127 - Psyr_0993 0.17 -0.6
1,126,198 + Psyr_0993 0.20 +0.1
1,126,198 + Psyr_0993 0.20 -2.2
1,126,198 + Psyr_0993 0.20 +0.1
1,126,199 - Psyr_0993 0.20 -0.0
1,126,503 + Psyr_0993 0.31 -0.1
1,126,503 + Psyr_0993 0.31 -0.1
1,126,503 + Psyr_0993 0.31 +0.7
1,126,983 + Psyr_0993 0.48 +2.0
1,127,160 + Psyr_0993 0.55 -0.8
1,127,161 - Psyr_0993 0.55 +0.3
1,127,161 - Psyr_0993 0.55 +1.5
1,127,294 - Psyr_0993 0.60 +0.7
1,127,343 + Psyr_0993 0.61 +1.0
1,127,475 + Psyr_0993 0.66 +1.7
1,127,475 + Psyr_0993 0.66 +2.1
1,127,475 + Psyr_0993 0.66 -0.2
1,127,475 + Psyr_0993 0.66 -0.1
1,127,475 + Psyr_0993 0.66 +0.9
1,127,476 - Psyr_0993 0.66 +0.7
1,127,476 - Psyr_0993 0.66 -0.3
1,127,476 - Psyr_0993 0.66 +0.5
1,127,484 + Psyr_0993 0.66 +1.1
1,127,484 + Psyr_0993 0.66 -3.1
1,127,485 - Psyr_0993 0.66 -0.4
1,127,527 + Psyr_0993 0.68 +2.1
1,127,528 - Psyr_0993 0.68 +0.4
1,127,694 + Psyr_0993 0.74 -0.4
1,127,695 - Psyr_0993 0.74 +1.8
1,127,695 - Psyr_0993 0.74 -0.1
1,127,695 - Psyr_0993 0.74 +0.8
1,127,695 - Psyr_0993 0.74 -0.4
1,127,697 + Psyr_0993 0.74 -0.2
1,127,711 + Psyr_0993 0.75 -0.8
1,127,712 - Psyr_0993 0.75 +0.1
1,127,793 + Psyr_0993 0.78 +0.4
1,127,793 + Psyr_0993 0.78 +0.3
1,127,793 + Psyr_0993 0.78 +0.8
1,127,793 + Psyr_0993 0.78 +1.0
1,127,794 - Psyr_0993 0.78 +0.1
1,127,794 - Psyr_0993 0.78 +0.2
1,127,794 - Psyr_0993 0.78 +3.3
1,127,794 - Psyr_0993 0.78 -2.2
1,127,869 + Psyr_0993 0.80 -0.6
1,128,661 - Psyr_0994 0.19 +0.9
1,128,683 + Psyr_0994 0.21 -0.9
1,128,684 - Psyr_0994 0.21 -0.1
1,128,684 - Psyr_0994 0.21 -1.0
1,128,684 - Psyr_0994 0.21 +1.0
1,128,684 - Psyr_0994 0.21 -0.7
1,128,684 - +3.6
1,128,811 + Psyr_0994 0.32 -0.1
1,128,811 + Psyr_0994 0.32 +0.7
1,128,811 + Psyr_0994 0.32 +1.0
1,128,811 + Psyr_0994 0.32 -0.8
1,128,811 + Psyr_0994 0.32 -0.7
1,128,812 - Psyr_0994 0.32 +1.3
1,128,812 - Psyr_0994 0.32 +1.9
1,128,812 - Psyr_0994 0.32 -1.4
1,128,812 - Psyr_0994 0.32 +0.8
1,128,812 - Psyr_0994 0.32 +0.7
1,128,812 - Psyr_0994 0.32 +0.2
1,129,168 + Psyr_0994 0.62 +0.5
1,129,168 + Psyr_0994 0.62 +0.5
1,129,168 + Psyr_0994 0.62 -3.4
1,129,168 + Psyr_0994 0.62 -1.2
1,129,168 + Psyr_0994 0.62 -3.4
1,129,168 + Psyr_0994 0.62 +0.8
1,129,168 + Psyr_0994 0.62 +1.0
1,129,168 + Psyr_0994 0.62 -0.3
1,129,168 + Psyr_0994 0.62 +0.8
1,129,168 + Psyr_0994 0.62 -0.3
1,129,168 + Psyr_0994 0.62 +1.0
1,129,168 + Psyr_0994 0.62 -2.0
1,129,168 + Psyr_0994 0.62 +1.2
1,129,168 + Psyr_0994 0.62 +0.6
1,129,168 + Psyr_0994 0.62 +0.2
1,129,168 + Psyr_0994 0.62 -0.6
1,129,168 + Psyr_0994 0.62 +1.4
1,129,168 + Psyr_0994 0.62 -1.7
1,129,168 + Psyr_0994 0.62 +0.4
1,129,169 - Psyr_0994 0.62 -0.2
1,129,169 - Psyr_0994 0.62 -1.1
1,129,169 - Psyr_0994 0.62 -2.0
1,129,169 - Psyr_0994 0.62 +1.2
1,129,169 - Psyr_0994 0.62 -2.2
1,129,169 - Psyr_0994 0.62 +0.5
1,129,169 - Psyr_0994 0.62 -0.1
1,129,169 - Psyr_0994 0.62 -0.0
1,129,169 - Psyr_0994 0.62 +1.4
1,129,169 - Psyr_0994 0.62 -0.4
1,129,169 - Psyr_0994 0.62 -0.8
1,129,169 - Psyr_0994 0.62 -1.2
1,129,169 - Psyr_0994 0.62 -0.0
1,129,169 - Psyr_0994 0.62 +0.2
1,129,169 - Psyr_0994 0.62 +1.0
1,129,174 + Psyr_0994 0.63 -0.4
1,129,174 + Psyr_0994 0.63 +0.2
1,129,175 - Psyr_0994 0.63 +0.9
1,129,389 - Psyr_0994 0.81 -1.0

Or see this region's nucleotide sequence