Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0719 and Psyr_0720 are separated by 11 nucleotides Psyr_0720 and Psyr_0721 are separated by 25 nucleotides Psyr_0721 and Psyr_0722 are separated by 112 nucleotides
Psyr_0719: Psyr_0719 - type IV pilus-associated protein, putative, at 821,149 to 824,358
_0719
Psyr_0720: Psyr_0720 - Fimbrial protein pilin, at 824,370 to 824,771
_0720
Psyr_0721: Psyr_0721 - glycine oxidase, at 824,797 to 825,900
_0721
Psyr_0722: Psyr_0722 - Two-component response regulator PilR, at 826,013 to 827,350
_0722
Position (kb) 824
825
826 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 823.900 kb on + strand, within Psyr_0719 at 823.900 kb on + strand, within Psyr_0719 at 823.900 kb on + strand, within Psyr_0719 at 823.900 kb on + strand, within Psyr_0719 at 823.900 kb on + strand, within Psyr_0719 at 823.900 kb on + strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.901 kb on - strand, within Psyr_0719 at 823.951 kb on + strand, within Psyr_0719 at 823.951 kb on + strand, within Psyr_0719 at 823.952 kb on - strand, within Psyr_0719 at 823.952 kb on - strand, within Psyr_0719 at 823.952 kb on - strand, within Psyr_0719 at 823.978 kb on + strand, within Psyr_0719 at 824.000 kb on - strand, within Psyr_0719 at 824.000 kb on - strand, within Psyr_0719 at 824.000 kb on - strand, within Psyr_0719 at 824.090 kb on + strand at 824.091 kb on - strand at 824.091 kb on - strand at 824.124 kb on + strand at 824.124 kb on + strand at 824.124 kb on + strand at 824.124 kb on + strand at 824.124 kb on + strand at 824.124 kb on + strand at 824.125 kb on - strand at 824.125 kb on - strand at 824.125 kb on - strand at 824.125 kb on - strand at 824.125 kb on - strand at 824.125 kb on - strand at 824.125 kb on - strand at 824.128 kb on + strand at 824.129 kb on - strand at 824.129 kb on - strand at 824.129 kb on - strand at 824.129 kb on - strand at 824.160 kb on + strand at 824.160 kb on + strand at 824.269 kb on - strand at 824.326 kb on + strand at 824.326 kb on + strand at 824.365 kb on + strand at 824.365 kb on + strand at 824.365 kb on + strand at 824.365 kb on + strand at 824.366 kb on - strand at 824.366 kb on - strand at 824.366 kb on - strand at 824.393 kb on + strand at 824.393 kb on + strand at 824.393 kb on + strand at 824.393 kb on + strand at 824.394 kb on - strand at 824.394 kb on - strand at 824.394 kb on - strand at 824.394 kb on - strand at 824.394 kb on - strand at 824.460 kb on + strand, within Psyr_0720 at 824.460 kb on + strand, within Psyr_0720 at 824.461 kb on - strand, within Psyr_0720 at 824.461 kb on - strand, within Psyr_0720 at 824.461 kb on - strand, within Psyr_0720 at 824.461 kb on - strand, within Psyr_0720 at 824.469 kb on + strand, within Psyr_0720 at 824.469 kb on + strand, within Psyr_0720 at 824.470 kb on - strand, within Psyr_0720 at 824.501 kb on + strand, within Psyr_0720 at 824.560 kb on - strand, within Psyr_0720 at 824.568 kb on + strand, within Psyr_0720 at 824.569 kb on - strand, within Psyr_0720 at 824.569 kb on - strand, within Psyr_0720 at 824.578 kb on + strand, within Psyr_0720 at 824.578 kb on + strand, within Psyr_0720 at 824.578 kb on + strand, within Psyr_0720 at 824.579 kb on - strand, within Psyr_0720 at 824.588 kb on + strand, within Psyr_0720 at 824.588 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.591 kb on + strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.592 kb on - strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.595 kb on + strand, within Psyr_0720 at 824.596 kb on - strand, within Psyr_0720 at 824.596 kb on - strand, within Psyr_0720 at 824.596 kb on - strand, within Psyr_0720 at 824.596 kb on - strand, within Psyr_0720 at 824.598 kb on + strand, within Psyr_0720 at 824.598 kb on + strand, within Psyr_0720 at 824.599 kb on - strand, within Psyr_0720 at 824.599 kb on - strand, within Psyr_0720 at 824.599 kb on - strand, within Psyr_0720 at 824.599 kb on - strand, within Psyr_0720 at 824.599 kb on - strand, within Psyr_0720 at 824.599 kb on - strand, within Psyr_0720 at 824.605 kb on + strand, within Psyr_0720 at 824.606 kb on - strand, within Psyr_0720 at 824.699 kb on + strand, within Psyr_0720 at 824.699 kb on + strand, within Psyr_0720 at 824.699 kb on + strand, within Psyr_0720 at 824.700 kb on - strand, within Psyr_0720 at 824.702 kb on + strand, within Psyr_0720 at 824.703 kb on - strand, within Psyr_0720 at 824.813 kb on + strand at 824.814 kb on - strand at 824.837 kb on + strand at 824.837 kb on + strand at 824.837 kb on + strand at 824.837 kb on + strand at 824.837 kb on + strand at 824.837 kb on + strand at 824.837 kb on + strand at 824.838 kb on - strand at 824.838 kb on - strand at 824.838 kb on - strand at 824.838 kb on - strand at 824.838 kb on - strand at 824.954 kb on - strand, within Psyr_0721 at 825.157 kb on - strand, within Psyr_0721 at 825.200 kb on - strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.214 kb on + strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.215 kb on - strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.236 kb on + strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.237 kb on - strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.484 kb on + strand, within Psyr_0721 at 825.485 kb on - strand, within Psyr_0721 at 825.898 kb on + strand at 825.898 kb on + strand at 825.898 kb on + strand at 825.898 kb on + strand at 825.899 kb on - strand at 825.938 kb on + strand at 825.939 kb on - strand at 825.939 kb on - strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.991 kb on + strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 825.992 kb on - strand at 826.005 kb on + strand at 826.149 kb on + strand, within Psyr_0722 at 826.149 kb on + strand, within Psyr_0722 at 826.149 kb on + strand, within Psyr_0722 at 826.264 kb on - strand, within Psyr_0722 at 826.315 kb on - strand, within Psyr_0722 at 826.473 kb on + strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.474 kb on - strand, within Psyr_0722 at 826.835 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.872 kb on + strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722 at 826.873 kb on - strand, within Psyr_0722
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 823,900 + Psyr_0719 0.86 -0.5 823,900 + Psyr_0719 0.86 -1.0 823,900 + Psyr_0719 0.86 -0.1 823,900 + Psyr_0719 0.86 -0.7 823,900 + Psyr_0719 0.86 -0.4 823,900 + Psyr_0719 0.86 -2.2 823,901 - Psyr_0719 0.86 +0.9 823,901 - Psyr_0719 0.86 +1.0 823,901 - Psyr_0719 0.86 -0.5 823,901 - Psyr_0719 0.86 +0.7 823,901 - Psyr_0719 0.86 -0.3 823,901 - Psyr_0719 0.86 +1.5 823,901 - Psyr_0719 0.86 -0.2 823,901 - Psyr_0719 0.86 +0.6 823,951 + Psyr_0719 0.87 +1.9 823,951 + Psyr_0719 0.87 -0.7 823,952 - Psyr_0719 0.87 +2.6 823,952 - Psyr_0719 0.87 +0.0 823,952 - Psyr_0719 0.87 +0.1 823,978 + Psyr_0719 0.88 -0.1 824,000 - Psyr_0719 0.89 +0.0 824,000 - Psyr_0719 0.89 -1.0 824,000 - Psyr_0719 0.89 -1.9 824,090 + +0.2 824,091 - -1.3 824,091 - -0.8 824,124 + +0.9 824,124 + +1.3 824,124 + +0.1 824,124 + -0.9 824,124 + +0.4 824,124 + +0.5 824,125 - -1.1 824,125 - +0.2 824,125 - -1.6 824,125 - +1.7 824,125 - +0.6 824,125 - -0.8 824,125 - -0.9 824,128 + +0.4 824,129 - +0.8 824,129 - +0.7 824,129 - +1.0 824,129 - -1.2 824,160 + -0.2 824,160 + +1.2 824,269 - +0.3 824,326 + +0.6 824,326 + +0.5 824,365 + +1.2 824,365 + +2.1 824,365 + +0.2 824,365 + +0.6 824,366 - +0.0 824,366 - -0.2 824,366 - +0.0 824,393 + -0.0 824,393 + -0.1 824,393 + -3.2 824,393 + -0.4 824,394 - -0.5 824,394 - +0.6 824,394 - +0.6 824,394 - -0.1 824,394 - -0.1 824,460 + Psyr_0720 0.22 -2.4 824,460 + Psyr_0720 0.22 -3.8 824,461 - Psyr_0720 0.23 -0.2 824,461 - Psyr_0720 0.23 -1.8 824,461 - Psyr_0720 0.23 +0.6 824,461 - Psyr_0720 0.23 -0.0 824,469 + Psyr_0720 0.25 -2.5 824,469 + Psyr_0720 0.25 -0.9 824,470 - Psyr_0720 0.25 +1.3 824,501 + Psyr_0720 0.33 -1.9 824,560 - Psyr_0720 0.47 +0.1 824,568 + Psyr_0720 0.49 -2.4 824,569 - Psyr_0720 0.50 -0.4 824,569 - Psyr_0720 0.50 -2.2 824,578 + Psyr_0720 0.52 +0.1 824,578 + Psyr_0720 0.52 -1.1 824,578 + Psyr_0720 0.52 -0.6 824,579 - Psyr_0720 0.52 +1.9 824,588 + Psyr_0720 0.54 +0.5 824,588 + Psyr_0720 0.54 -0.2 824,591 + Psyr_0720 0.55 -0.8 824,591 + Psyr_0720 0.55 +1.9 824,591 + Psyr_0720 0.55 +0.9 824,591 + Psyr_0720 0.55 -3.0 824,591 + Psyr_0720 0.55 -0.6 824,591 + Psyr_0720 0.55 +1.6 824,591 + Psyr_0720 0.55 -0.2 824,591 + Psyr_0720 0.55 -1.7 824,591 + Psyr_0720 0.55 -0.9 824,591 + Psyr_0720 0.55 +1.7 824,591 + Psyr_0720 0.55 -0.1 824,592 - Psyr_0720 0.55 +1.5 824,592 - Psyr_0720 0.55 +0.1 824,592 - Psyr_0720 0.55 -0.1 824,592 - Psyr_0720 0.55 -1.4 824,592 - Psyr_0720 0.55 -0.3 824,592 - Psyr_0720 0.55 -1.0 824,592 - Psyr_0720 0.55 -0.5 824,592 - Psyr_0720 0.55 -0.2 824,592 - Psyr_0720 0.55 -0.7 824,592 - Psyr_0720 0.55 -2.8 824,592 - Psyr_0720 0.55 +1.1 824,592 - Psyr_0720 0.55 +0.9 824,592 - Psyr_0720 0.55 -1.9 824,592 - Psyr_0720 0.55 -1.3 824,595 + Psyr_0720 0.56 -0.4 824,595 + Psyr_0720 0.56 +0.5 824,595 + Psyr_0720 0.56 -0.0 824,595 + Psyr_0720 0.56 +0.3 824,595 + Psyr_0720 0.56 -0.5 824,595 + Psyr_0720 0.56 +0.1 824,595 + Psyr_0720 0.56 +1.3 824,595 + Psyr_0720 0.56 -1.2 824,596 - Psyr_0720 0.56 -1.4 824,596 - Psyr_0720 0.56 +0.7 824,596 - Psyr_0720 0.56 -0.8 824,596 - Psyr_0720 0.56 +0.9 824,598 + Psyr_0720 0.57 -0.4 824,598 + Psyr_0720 0.57 +2.7 824,599 - Psyr_0720 0.57 -1.4 824,599 - Psyr_0720 0.57 +0.4 824,599 - Psyr_0720 0.57 +1.8 824,599 - Psyr_0720 0.57 +0.1 824,599 - Psyr_0720 0.57 +0.8 824,599 - Psyr_0720 0.57 -0.7 824,605 + Psyr_0720 0.58 +1.4 824,606 - Psyr_0720 0.59 -0.8 824,699 + Psyr_0720 0.82 +0.3 824,699 + Psyr_0720 0.82 -0.3 824,699 + Psyr_0720 0.82 -1.0 824,700 - Psyr_0720 0.82 +0.1 824,702 + Psyr_0720 0.83 +1.4 824,703 - Psyr_0720 0.83 +0.5 824,813 + +1.5 824,814 - -0.9 824,837 + +0.9 824,837 + +0.6 824,837 + +2.5 824,837 + +0.7 824,837 + +0.8 824,837 + -0.6 824,837 + +0.8 824,838 - -0.7 824,838 - -0.6 824,838 - -0.6 824,838 - -1.9 824,838 - -0.3 824,954 - Psyr_0721 0.14 -0.9 825,157 - Psyr_0721 0.33 +0.3 825,200 - Psyr_0721 0.37 -0.2 825,214 + Psyr_0721 0.38 -0.7 825,214 + Psyr_0721 0.38 +2.3 825,214 + Psyr_0721 0.38 -0.1 825,214 + Psyr_0721 0.38 +0.1 825,214 + Psyr_0721 0.38 -1.7 825,214 + Psyr_0721 0.38 +1.5 825,214 + Psyr_0721 0.38 +0.0 825,215 - Psyr_0721 0.38 +0.0 825,215 - Psyr_0721 0.38 +0.2 825,215 - Psyr_0721 0.38 +0.9 825,215 - Psyr_0721 0.38 -0.3 825,215 - Psyr_0721 0.38 +0.6 825,215 - Psyr_0721 0.38 +0.6 825,236 + Psyr_0721 0.40 -0.4 825,236 + Psyr_0721 0.40 +0.3 825,236 + Psyr_0721 0.40 +0.9 825,236 + Psyr_0721 0.40 -1.2 825,237 - Psyr_0721 0.40 -0.8 825,237 - Psyr_0721 0.40 +0.0 825,237 - Psyr_0721 0.40 +0.3 825,237 - Psyr_0721 0.40 -1.4 825,484 + Psyr_0721 0.62 -0.7 825,484 + Psyr_0721 0.62 -3.1 825,485 - Psyr_0721 0.62 +0.0 825,898 + +0.1 825,898 + -2.9 825,898 + +0.4 825,898 + +0.5 825,899 - +0.3 825,938 + +0.7 825,939 - +0.3 825,939 - +2.5 825,991 + -1.1 825,991 + -0.1 825,991 + +0.8 825,991 + +0.2 825,991 + +0.9 825,991 + -0.2 825,991 + +1.6 825,991 + -0.1 825,991 + +0.9 825,991 + +0.1 825,991 + -0.6 825,991 + +1.0 825,991 + -0.1 825,991 + +0.5 825,991 + +0.2 825,991 + -0.3 825,991 + +3.8 825,991 + -0.1 825,991 + +1.5 825,991 + +0.4 825,991 + -0.9 825,991 + -0.4 825,991 + -0.7 825,992 - +0.9 825,992 - +0.3 825,992 - +1.7 825,992 - +0.1 825,992 - +2.4 825,992 - +1.4 825,992 - +0.3 825,992 - +0.8 825,992 - -0.1 825,992 - +1.6 825,992 - -0.9 825,992 - +1.8 825,992 - +2.7 825,992 - +3.7 825,992 - +0.4 825,992 - -0.9 825,992 - +0.1 825,992 - -1.6 825,992 - +0.3 825,992 - +0.3 825,992 - +0.3 826,005 + +1.0 826,149 + Psyr_0722 0.10 -0.5 826,149 + Psyr_0722 0.10 -0.6 826,149 + Psyr_0722 0.10 -0.4 826,264 - Psyr_0722 0.19 -2.1 826,315 - Psyr_0722 0.23 +1.0 826,473 + Psyr_0722 0.34 +0.9 826,474 - Psyr_0722 0.34 +1.4 826,474 - Psyr_0722 0.34 +0.9 826,474 - Psyr_0722 0.34 +0.3 826,474 - Psyr_0722 0.34 -0.0 826,474 - Psyr_0722 0.34 -0.2 826,474 - Psyr_0722 0.34 -0.4 826,835 + Psyr_0722 0.61 -0.5 826,872 + Psyr_0722 0.64 +0.9 826,872 + Psyr_0722 0.64 +0.2 826,872 + Psyr_0722 0.64 -2.0 826,872 + Psyr_0722 0.64 -1.0 826,873 - Psyr_0722 0.64 +0.7 826,873 - Psyr_0722 0.64 +0.7 826,873 - Psyr_0722 0.64 -0.4 826,873 - Psyr_0722 0.64 +2.6
Or see this region's nucleotide sequence