Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0559

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0558 and Psyr_0559 are separated by 255 nucleotidesPsyr_0559 and Psyr_0560 are separated by 45 nucleotides Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113 _0558 Psyr_0559: Psyr_0559 - thiosulfate sulfurtransferase, at 634,369 to 636,201 _0559 Psyr_0560: Psyr_0560 - conserved hypothetical protein, at 636,247 to 637,782 _0560 Position (kb) 634 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.506 kb on + strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.507 kb on - strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.571 kb on + strand, within Psyr_0558at 633.572 kb on - strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.641 kb on + strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.642 kb on - strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.765 kb on - strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.881 kb on + strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.882 kb on - strand, within Psyr_0558at 633.965 kb on + strandat 634.087 kb on + strandat 634.088 kb on - strandat 634.160 kb on + strandat 634.161 kb on - strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.202 kb on + strandat 634.203 kb on - strandat 634.223 kb on + strandat 634.223 kb on + strandat 634.224 kb on - strandat 634.224 kb on - strandat 634.224 kb on - strandat 634.228 kb on + strandat 634.229 kb on - strandat 634.229 kb on - strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.264 kb on + strandat 634.265 kb on - strandat 634.265 kb on - strandat 634.265 kb on - strandat 634.327 kb on + strandat 635.262 kb on - strand, within Psyr_0559at 635.262 kb on - strand, within Psyr_0559at 635.262 kb on - strand, within Psyr_0559at 635.262 kb on - strand, within Psyr_0559at 635.442 kb on - strand, within Psyr_0559at 635.442 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.484 kb on - strand, within Psyr_0559at 635.745 kb on - strand, within Psyr_0559at 635.745 kb on - strand, within Psyr_0559at 635.745 kb on - strand, within Psyr_0559at 635.761 kb on - strand, within Psyr_0559at 635.868 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 635.952 kb on - strand, within Psyr_0559at 636.049 kb on - strandat 636.049 kb on - strandat 636.049 kb on - strandat 636.096 kb on - strandat 636.236 kb on + strandat 636.237 kb on - strandat 636.237 kb on - strandat 636.264 kb on + strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.265 kb on - strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.288 kb on + strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.289 kb on - strandat 636.484 kb on + strand, within Psyr_0560at 636.485 kb on - strand, within Psyr_0560at 636.485 kb on - strand, within Psyr_0560at 636.485 kb on - strand, within Psyr_0560at 636.787 kb on + strand, within Psyr_0560at 636.788 kb on - strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.895 kb on + strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.896 kb on - strand, within Psyr_0560at 636.921 kb on - strand, within Psyr_0560at 636.921 kb on - strand, within Psyr_0560at 636.921 kb on - strand, within Psyr_0560at 637.146 kb on + strand, within Psyr_0560at 637.147 kb on - strand, within Psyr_0560

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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633,506 + Psyr_0558 0.66 +0.4
633,506 + Psyr_0558 0.66 -1.1
633,506 + Psyr_0558 0.66 -1.1
633,506 + Psyr_0558 0.66 +0.6
633,506 + Psyr_0558 0.66 +0.6
633,506 + Psyr_0558 0.66 -0.8
633,506 + Psyr_0558 0.66 -0.4
633,506 + Psyr_0558 0.66 +0.6
633,506 + Psyr_0558 0.66 +2.4
633,506 + Psyr_0558 0.66 +0.7
633,506 + Psyr_0558 0.66 +0.2
633,507 - Psyr_0558 0.66 +1.0
633,507 - Psyr_0558 0.66 -0.3
633,507 - Psyr_0558 0.66 -1.1
633,507 - Psyr_0558 0.66 -2.3
633,507 - Psyr_0558 0.66 +0.6
633,507 - Psyr_0558 0.66 +0.9
633,507 - Psyr_0558 0.66 +0.3
633,571 + Psyr_0558 0.70 +0.4
633,571 + Psyr_0558 0.70 +0.7
633,571 + Psyr_0558 0.70 -1.9
633,571 + Psyr_0558 0.70 -0.0
633,572 - Psyr_0558 0.70 +1.7
633,641 + Psyr_0558 0.74 -1.4
633,641 + Psyr_0558 0.74 -0.1
633,642 - Psyr_0558 0.74 +0.2
633,642 - Psyr_0558 0.74 +1.3
633,642 - Psyr_0558 0.74 +0.3
633,642 - Psyr_0558 0.74 -0.6
633,765 - Psyr_0558 0.80 +0.7
633,765 - Psyr_0558 0.80 +0.1
633,881 + Psyr_0558 0.87 +1.2
633,881 + Psyr_0558 0.87 -1.3
633,881 + Psyr_0558 0.87 -0.4
633,881 + Psyr_0558 0.87 +0.3
633,881 + Psyr_0558 0.87 +0.0
633,881 + Psyr_0558 0.87 -0.5
633,882 - Psyr_0558 0.87 +0.5
633,882 - Psyr_0558 0.87 -0.1
633,882 - Psyr_0558 0.87 +1.8
633,882 - Psyr_0558 0.87 +0.0
633,882 - Psyr_0558 0.87 +0.4
633,882 - Psyr_0558 0.87 +0.8
633,882 - Psyr_0558 0.87 +1.2
633,882 - Psyr_0558 0.87 +0.9
633,882 - Psyr_0558 0.87 -0.2
633,882 - Psyr_0558 0.87 +1.2
633,882 - Psyr_0558 0.87 -0.7
633,882 - Psyr_0558 0.87 +0.0
633,882 - Psyr_0558 0.87 +1.4
633,965 + +0.4
634,087 + -0.7
634,088 - -0.1
634,160 + +0.2
634,161 - +0.3
634,202 + -1.5
634,202 + +0.1
634,202 + +1.9
634,202 + -0.7
634,202 + +0.2
634,203 - +1.1
634,223 + +0.3
634,223 + +2.6
634,224 - -1.3
634,224 - -1.1
634,224 - -0.4
634,228 + -1.2
634,229 - +1.0
634,229 - +1.1
634,264 + +1.9
634,264 + -0.1
634,264 + -0.7
634,265 - -0.9
634,265 - -0.7
634,265 - +0.1
634,327 + +0.4
635,262 - Psyr_0559 0.49 -0.9
635,262 - Psyr_0559 0.49 -0.9
635,262 - Psyr_0559 0.49 -0.3
635,262 - Psyr_0559 0.49 -1.3
635,442 - Psyr_0559 0.59 +0.3
635,442 - Psyr_0559 0.59 -0.7
635,484 - Psyr_0559 0.61 -0.6
635,484 - Psyr_0559 0.61 +0.2
635,484 - Psyr_0559 0.61 +1.9
635,484 - Psyr_0559 0.61 -2.8
635,484 - Psyr_0559 0.61 -0.7
635,745 - Psyr_0559 0.75 -0.2
635,745 - Psyr_0559 0.75 -1.1
635,745 - Psyr_0559 0.75 +1.9
635,761 - Psyr_0559 0.76 -1.9
635,868 - Psyr_0559 0.82 +1.2
635,952 - Psyr_0559 0.86 +0.4
635,952 - Psyr_0559 0.86 -0.5
635,952 - Psyr_0559 0.86 -0.1
635,952 - Psyr_0559 0.86 -0.2
635,952 - Psyr_0559 0.86 -3.7
636,049 - +0.9
636,049 - +0.8
636,049 - +0.9
636,096 - -0.0
636,236 + +2.7
636,237 - +0.2
636,237 - -0.8
636,264 + -0.6
636,265 - +0.5
636,265 - -0.3
636,265 - +1.0
636,265 - -0.5
636,265 - -0.8
636,288 + -2.7
636,288 + +0.7
636,288 + +1.6
636,288 + +1.8
636,288 + +1.3
636,288 + +2.9
636,288 + +1.2
636,289 - +0.5
636,289 - +1.1
636,289 - -0.4
636,289 - -0.3
636,289 - -1.1
636,289 - -1.7
636,289 - +1.2
636,289 - +0.1
636,484 + Psyr_0560 0.15 +1.6
636,485 - Psyr_0560 0.15 -1.9
636,485 - Psyr_0560 0.15 -0.3
636,485 - Psyr_0560 0.15 -2.5
636,787 + Psyr_0560 0.35 -0.2
636,788 - Psyr_0560 0.35 +1.3
636,895 + Psyr_0560 0.42 -2.5
636,895 + Psyr_0560 0.42 -1.1
636,895 + Psyr_0560 0.42 +0.5
636,895 + Psyr_0560 0.42 -0.6
636,895 + Psyr_0560 0.42 -0.1
636,896 - Psyr_0560 0.42 -0.1
636,896 - Psyr_0560 0.42 +0.2
636,896 - Psyr_0560 0.42 +1.0
636,896 - Psyr_0560 0.42 +0.2
636,896 - Psyr_0560 0.42 +1.9
636,921 - Psyr_0560 0.44 -1.2
636,921 - Psyr_0560 0.44 +0.3
636,921 - Psyr_0560 0.44 -0.7
637,146 + Psyr_0560 0.59 -1.7
637,147 - Psyr_0560 0.59 +1.3

Or see this region's nucleotide sequence