Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0472

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0471 and Psyr_0472 overlap by 4 nucleotidesPsyr_0472 and Psyr_0473 are separated by 33 nucleotidesPsyr_0473 and Psyr_0474 are separated by 7 nucleotides Psyr_0471: Psyr_0471 - coproporphyrinogen III oxidase, anaerobic, at 510,393 to 511,607 _0471 Psyr_0472: Psyr_0472 - Ham1-like protein, at 511,604 to 512,197 _0472 Psyr_0473: Psyr_0473 - Methionine biosynthesis MetW, at 512,231 to 512,851 _0473 Psyr_0474: Psyr_0474 - homoserine O-acetyltransferase, at 512,859 to 513,998 _0474 Position (kb) 511 512 513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 510.665 kb on - strand, within Psyr_0471at 510.692 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.772 kb on + strand, within Psyr_0471at 510.811 kb on + strand, within Psyr_0471at 510.811 kb on + strand, within Psyr_0471at 510.812 kb on - strand, within Psyr_0471at 510.826 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.417 kb on + strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.418 kb on - strand, within Psyr_0471at 511.469 kb on - strand, within Psyr_0471at 511.496 kb on + strandat 511.496 kb on + strandat 511.497 kb on - strandat 511.504 kb on + strandat 511.504 kb on + strandat 511.504 kb on + strandat 511.504 kb on + strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.505 kb on - strandat 511.835 kb on + strand, within Psyr_0472at 511.835 kb on + strand, within Psyr_0472at 511.836 kb on - strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.944 kb on + strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.945 kb on - strand, within Psyr_0472at 511.948 kb on + strand, within Psyr_0472at 512.277 kb on + strandat 512.277 kb on + strandat 512.303 kb on - strand, within Psyr_0473at 512.436 kb on + strand, within Psyr_0473at 512.437 kb on - strand, within Psyr_0473at 512.443 kb on + strand, within Psyr_0473at 512.444 kb on - strand, within Psyr_0473at 512.444 kb on - strand, within Psyr_0473at 512.445 kb on + strand, within Psyr_0473at 512.445 kb on + strand, within Psyr_0473at 512.445 kb on + strand, within Psyr_0473at 512.446 kb on - strand, within Psyr_0473at 512.446 kb on - strand, within Psyr_0473at 512.446 kb on - strand, within Psyr_0473at 512.490 kb on + strand, within Psyr_0473at 512.490 kb on + strand, within Psyr_0473at 512.491 kb on - strand, within Psyr_0473at 512.491 kb on - strand, within Psyr_0473at 512.881 kb on + strandat 512.881 kb on + strandat 512.881 kb on + strandat 512.881 kb on + strandat 512.881 kb on + strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.882 kb on - strandat 512.959 kb on + strandat 513.121 kb on + strand, within Psyr_0474at 513.121 kb on + strand, within Psyr_0474at 513.122 kb on - strand, within Psyr_0474at 513.148 kb on + strand, within Psyr_0474at 513.148 kb on + strand, within Psyr_0474at 513.148 kb on + strand, within Psyr_0474at 513.148 kb on + strand, within Psyr_0474at 513.149 kb on - strand, within Psyr_0474at 513.149 kb on - strand, within Psyr_0474at 513.152 kb on + strand, within Psyr_0474at 513.153 kb on - strand, within Psyr_0474at 513.153 kb on - strand, within Psyr_0474

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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510,665 - Psyr_0471 0.22 +1.3
510,692 + Psyr_0471 0.25 +2.8
510,772 + Psyr_0471 0.31 +1.9
510,772 + Psyr_0471 0.31 +0.7
510,772 + Psyr_0471 0.31 -2.1
510,772 + Psyr_0471 0.31 -1.1
510,811 + Psyr_0471 0.34 +1.7
510,811 + Psyr_0471 0.34 -0.0
510,812 - Psyr_0471 0.34 -0.1
510,826 + Psyr_0471 0.36 -1.3
511,417 + Psyr_0471 0.84 +1.5
511,417 + Psyr_0471 0.84 -1.8
511,417 + Psyr_0471 0.84 +1.4
511,417 + Psyr_0471 0.84 -0.5
511,417 + Psyr_0471 0.84 +0.9
511,417 + Psyr_0471 0.84 -0.3
511,417 + Psyr_0471 0.84 +0.2
511,417 + Psyr_0471 0.84 +1.1
511,417 + Psyr_0471 0.84 +0.1
511,417 + Psyr_0471 0.84 +0.1
511,417 + Psyr_0471 0.84 -0.4
511,418 - Psyr_0471 0.84 -0.3
511,418 - Psyr_0471 0.84 +0.9
511,418 - Psyr_0471 0.84 -2.7
511,418 - Psyr_0471 0.84 -0.1
511,418 - Psyr_0471 0.84 +0.5
511,418 - Psyr_0471 0.84 +0.7
511,418 - Psyr_0471 0.84 +0.1
511,469 - Psyr_0471 0.89 +1.7
511,496 + -0.1
511,496 + +0.2
511,497 - +0.2
511,504 + -0.5
511,504 + +1.6
511,504 + +0.5
511,504 + -2.4
511,505 - -2.2
511,505 - +1.1
511,505 - +1.8
511,505 - +0.7
511,505 - -1.4
511,505 - +0.2
511,835 + Psyr_0472 0.39 -0.8
511,835 + Psyr_0472 0.39 +0.3
511,836 - Psyr_0472 0.39 -0.7
511,944 + Psyr_0472 0.57 -1.7
511,944 + Psyr_0472 0.57 +0.1
511,944 + Psyr_0472 0.57 -0.7
511,944 + Psyr_0472 0.57 -3.5
511,944 + Psyr_0472 0.57 -1.7
511,944 + Psyr_0472 0.57 -0.9
511,944 + Psyr_0472 0.57 -0.2
511,944 + Psyr_0472 0.57 +0.4
511,944 + Psyr_0472 0.57 -0.5
511,944 + Psyr_0472 0.57 -0.2
511,945 - Psyr_0472 0.57 -0.3
511,945 - Psyr_0472 0.57 -0.2
511,945 - Psyr_0472 0.57 +0.3
511,945 - Psyr_0472 0.57 -0.7
511,945 - Psyr_0472 0.57 -1.9
511,945 - Psyr_0472 0.57 +0.6
511,948 + Psyr_0472 0.58 +0.6
512,277 + +0.5
512,277 + +1.3
512,303 - Psyr_0473 0.12 +0.2
512,436 + Psyr_0473 0.33 -0.7
512,437 - Psyr_0473 0.33 +2.5
512,443 + Psyr_0473 0.34 -0.8
512,444 - Psyr_0473 0.34 -0.1
512,444 - Psyr_0473 0.34 -0.7
512,445 + Psyr_0473 0.34 +0.6
512,445 + Psyr_0473 0.34 -0.6
512,445 + Psyr_0473 0.34 -0.2
512,446 - Psyr_0473 0.35 -0.4
512,446 - Psyr_0473 0.35 +1.8
512,446 - Psyr_0473 0.35 -0.9
512,490 + Psyr_0473 0.42 -1.4
512,490 + Psyr_0473 0.42 -0.9
512,491 - Psyr_0473 0.42 +0.8
512,491 - Psyr_0473 0.42 +2.8
512,881 + -0.3
512,881 + +0.3
512,881 + -0.4
512,881 + +0.3
512,881 + -0.2
512,882 - -2.1
512,882 - +1.3
512,882 - +1.1
512,882 - -0.3
512,882 - -0.2
512,882 - -0.1
512,882 - +0.5
512,882 - -0.4
512,959 + -0.3
513,121 + Psyr_0474 0.23 -3.2
513,121 + Psyr_0474 0.23 -3.1
513,122 - Psyr_0474 0.23 +1.2
513,148 + Psyr_0474 0.25 -0.4
513,148 + Psyr_0474 0.25 +0.9
513,148 + Psyr_0474 0.25 -0.9
513,148 + Psyr_0474 0.25 -0.1
513,149 - Psyr_0474 0.25 -0.1
513,149 - Psyr_0474 0.25 -0.3
513,152 + Psyr_0474 0.26 -0.6
513,153 - Psyr_0474 0.26 +0.7
513,153 - Psyr_0474 0.26 -0.8

Or see this region's nucleotide sequence