Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0461 and Psyr_0462 are separated by 152 nucleotides Psyr_0462 and Psyr_0463 are separated by 22 nucleotides Psyr_0463 and Psyr_0464 are separated by 134 nucleotides Psyr_0464 and Psyr_0465 overlap by 1 nucleotides
Psyr_0461: Psyr_0461 - Thioesterase superfamily, at 499,944 to 500,339
_0461
Psyr_0462: Psyr_0462 - Hydroxypyruvate isomerase, at 500,492 to 501,277
_0462
Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757
_0463
Psyr_0464: Psyr_0464 - hypothetical protein, at 502,892 to 503,530
_0464
Psyr_0465: Psyr_0465 - HopAN1 protein, at 503,530 to 504,819
_0465
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 500.307 kb on + strand at 500.329 kb on + strand at 500.329 kb on + strand at 500.329 kb on + strand at 500.329 kb on + strand at 500.330 kb on - strand at 500.376 kb on + strand at 500.376 kb on + strand at 500.376 kb on + strand at 500.418 kb on - strand at 500.418 kb on - strand at 500.481 kb on - strand at 500.580 kb on + strand, within Psyr_0462 at 500.616 kb on + strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.739 kb on + strand, within Psyr_0462 at 500.740 kb on - strand, within Psyr_0462 at 500.913 kb on + strand, within Psyr_0462 at 500.913 kb on + strand, within Psyr_0462 at 500.914 kb on - strand, within Psyr_0462 at 500.914 kb on - strand, within Psyr_0462 at 500.914 kb on - strand, within Psyr_0462 at 500.954 kb on + strand, within Psyr_0462 at 500.954 kb on + strand, within Psyr_0462 at 500.955 kb on - strand, within Psyr_0462 at 501.000 kb on + strand, within Psyr_0462 at 501.001 kb on - strand, within Psyr_0462 at 501.160 kb on - strand, within Psyr_0462 at 501.165 kb on + strand, within Psyr_0462 at 501.177 kb on + strand, within Psyr_0462 at 501.280 kb on + strand at 501.281 kb on - strand at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.770 kb on + strand, within Psyr_0463 at 502.145 kb on - strand, within Psyr_0463 at 502.369 kb on + strand, within Psyr_0463 at 502.687 kb on + strand at 502.688 kb on - strand at 502.842 kb on - strand at 502.842 kb on - strand at 503.010 kb on + strand, within Psyr_0464 at 503.010 kb on + strand, within Psyr_0464 at 503.149 kb on + strand, within Psyr_0464 at 503.461 kb on + strand, within Psyr_0464 at 503.475 kb on + strand at 503.476 kb on - strand at 503.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 500,307 + +0.6 500,329 + -0.3 500,329 + -1.6 500,329 + +0.5 500,329 + +0.4 500,330 - +0.4 500,376 + -3.4 500,376 + +0.7 500,376 + +0.7 500,418 - +0.5 500,418 - +2.9 500,481 - +0.2 500,580 + Psyr_0462 0.11 -0.6 500,616 + Psyr_0462 0.16 +0.3 500,617 - Psyr_0462 0.16 -1.3 500,617 - Psyr_0462 0.16 +0.2 500,617 - Psyr_0462 0.16 +0.2 500,617 - Psyr_0462 0.16 -0.9 500,617 - Psyr_0462 0.16 +0.2 500,617 - Psyr_0462 0.16 +0.4 500,739 + Psyr_0462 0.31 -1.9 500,740 - Psyr_0462 0.32 -0.6 500,913 + Psyr_0462 0.54 -0.3 500,913 + Psyr_0462 0.54 -0.1 500,914 - Psyr_0462 0.54 +2.6 500,914 - Psyr_0462 0.54 +1.9 500,914 - Psyr_0462 0.54 -0.5 500,954 + Psyr_0462 0.59 +1.1 500,954 + Psyr_0462 0.59 -0.2 500,955 - Psyr_0462 0.59 +0.2 501,000 + Psyr_0462 0.65 -0.9 501,001 - Psyr_0462 0.65 -0.3 501,160 - Psyr_0462 0.85 +0.1 501,165 + Psyr_0462 0.86 -0.6 501,177 + Psyr_0462 0.87 +1.4 501,280 + +0.5 501,281 - +0.8 501,663 + Psyr_0463 0.25 -1.1 501,663 + Psyr_0463 0.25 -0.8 501,663 + Psyr_0463 0.25 -0.6 501,663 + Psyr_0463 0.25 -0.6 501,663 + Psyr_0463 0.25 +0.0 501,664 - Psyr_0463 0.25 -2.4 501,664 - Psyr_0463 0.25 +0.4 501,664 - Psyr_0463 0.25 +0.4 501,664 - Psyr_0463 0.25 -0.4 501,664 - Psyr_0463 0.25 -0.5 501,770 + Psyr_0463 0.32 -0.3 502,145 - Psyr_0463 0.58 +2.5 502,369 + Psyr_0463 0.73 +0.5 502,687 + +0.2 502,688 - +1.3 502,842 - +0.1 502,842 - -0.1 503,010 + Psyr_0464 0.18 +0.2 503,010 + Psyr_0464 0.18 -2.8 503,149 + Psyr_0464 0.40 -3.7 503,461 + Psyr_0464 0.89 +1.4 503,475 + -1.9 503,476 - -2.8 503,476 - -1.6
Or see this region's nucleotide sequence