Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0450

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0448 and Psyr_0449 are separated by 69 nucleotidesPsyr_0449 and Psyr_0450 are separated by 1 nucleotidesPsyr_0450 and Psyr_0451 are separated by 1 nucleotides Psyr_0448: Psyr_0448 - Acyl transferase region, at 484,738 to 485,673 _0448 Psyr_0449: Psyr_0449 - Malonate transporter MadL subunit, at 485,743 to 486,159 _0449 Psyr_0450: Psyr_0450 - Malonate/sodium symporter MadM subunit, at 486,161 to 486,925 _0450 Psyr_0451: Psyr_0451 - regulatory protein, LysR:LysR, substrate-binding protein, at 486,927 to 487,853 _0451 Position (kb) 486 487Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 485.165 kb on + strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.401 kb on + strand, within Psyr_0448at 485.402 kb on - strand, within Psyr_0448at 485.692 kb on - strandat 485.692 kb on - strandat 485.748 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.753 kb on - strandat 485.766 kb on - strandat 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.499 kb on - strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.896 kb on + strandat 486.896 kb on + strandat 486.896 kb on + strandat 486.896 kb on + strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.897 kb on - strandat 486.924 kb on - strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.958 kb on + strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 486.959 kb on - strandat 487.435 kb on + strand, within Psyr_0451at 487.435 kb on + strand, within Psyr_0451at 487.435 kb on + strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.436 kb on - strand, within Psyr_0451at 487.541 kb on - strand, within Psyr_0451at 487.541 kb on - strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.651 kb on + strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.652 kb on - strand, within Psyr_0451at 487.752 kb on - strand, within Psyr_0451at 487.752 kb on - strand, within Psyr_0451at 487.813 kb on - strandat 487.813 kb on - strandat 487.865 kb on + strandat 487.872 kb on - strandat 487.872 kb on - strandat 487.894 kb on + strandat 487.894 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.904 kb on + strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strandat 487.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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485,165 + Psyr_0448 0.46 +0.1
485,165 + Psyr_0448 0.46 -0.2
485,166 - Psyr_0448 0.46 -1.8
485,166 - Psyr_0448 0.46 -1.6
485,166 - Psyr_0448 0.46 +1.8
485,166 - Psyr_0448 0.46 -0.8
485,396 + Psyr_0448 0.70 +0.6
485,396 + Psyr_0448 0.70 +1.1
485,396 + Psyr_0448 0.70 +0.8
485,396 + Psyr_0448 0.70 -0.8
485,396 + Psyr_0448 0.70 -0.2
485,397 - Psyr_0448 0.70 +0.2
485,397 - Psyr_0448 0.70 +1.1
485,401 + Psyr_0448 0.71 +0.3
485,402 - Psyr_0448 0.71 +0.3
485,692 - -1.4
485,692 - -1.2
485,748 + +1.0
485,752 + +1.0
485,752 + -0.6
485,752 + -1.0
485,753 - +1.0
485,766 - +0.4
485,953 + Psyr_0449 0.50 +1.8
485,953 + Psyr_0449 0.50 +0.0
485,953 + Psyr_0449 0.50 -0.3
485,953 + Psyr_0449 0.50 +0.2
485,953 + Psyr_0449 0.50 +0.8
485,953 + Psyr_0449 0.50 +0.1
485,954 - Psyr_0449 0.51 -2.9
485,954 - Psyr_0449 0.51 +0.8
485,954 - Psyr_0449 0.51 -1.2
485,954 - Psyr_0449 0.51 -0.0
486,160 + -2.4
486,160 + +0.6
486,160 + -1.0
486,160 + -0.1
486,161 - +0.6
486,161 - -0.2
486,161 - -1.0
486,499 - Psyr_0450 0.44 +1.0
486,602 + Psyr_0450 0.58 +0.8
486,602 + Psyr_0450 0.58 +0.4
486,602 + Psyr_0450 0.58 +2.5
486,602 + Psyr_0450 0.58 +2.1
486,602 + Psyr_0450 0.58 +2.7
486,602 + Psyr_0450 0.58 +1.2
486,602 + Psyr_0450 0.58 +0.9
486,602 + Psyr_0450 0.58 +0.3
486,602 + Psyr_0450 0.58 -0.6
486,602 + Psyr_0450 0.58 +0.1
486,602 + Psyr_0450 0.58 +0.6
486,602 + Psyr_0450 0.58 -0.5
486,602 + Psyr_0450 0.58 +0.6
486,602 + Psyr_0450 0.58 +1.2
486,603 - Psyr_0450 0.58 +0.6
486,603 - Psyr_0450 0.58 +0.7
486,603 - Psyr_0450 0.58 -0.9
486,603 - Psyr_0450 0.58 +1.5
486,603 - Psyr_0450 0.58 +0.9
486,603 - Psyr_0450 0.58 -0.0
486,603 - Psyr_0450 0.58 -1.0
486,603 - Psyr_0450 0.58 -0.6
486,651 + Psyr_0450 0.64 +1.5
486,651 + Psyr_0450 0.64 -0.5
486,652 - Psyr_0450 0.64 -0.9
486,652 - Psyr_0450 0.64 +1.2
486,652 - Psyr_0450 0.64 -2.6
486,652 - Psyr_0450 0.64 +0.0
486,652 - Psyr_0450 0.64 -2.9
486,652 - Psyr_0450 0.64 -2.2
486,896 + +0.0
486,896 + -0.8
486,896 + -0.0
486,896 + +2.1
486,897 - -0.4
486,897 - -0.4
486,897 - -0.9
486,897 - -1.0
486,924 - -0.9
486,958 + +1.0
486,958 + +0.1
486,958 + -0.9
486,958 + +0.2
486,959 - +0.0
486,959 - -4.4
486,959 - +1.0
486,959 - +0.5
486,959 - -0.6
487,435 + Psyr_0451 0.55 +0.3
487,435 + Psyr_0451 0.55 -0.1
487,435 + Psyr_0451 0.55 -1.3
487,436 - Psyr_0451 0.55 -0.6
487,436 - Psyr_0451 0.55 -2.0
487,436 - Psyr_0451 0.55 -0.4
487,541 - Psyr_0451 0.66 +0.6
487,541 - Psyr_0451 0.66 +1.7
487,651 + Psyr_0451 0.78 -0.6
487,651 + Psyr_0451 0.78 +0.9
487,651 + Psyr_0451 0.78 -0.1
487,651 + Psyr_0451 0.78 +0.3
487,652 - Psyr_0451 0.78 -0.6
487,652 - Psyr_0451 0.78 +0.5
487,652 - Psyr_0451 0.78 +0.5
487,652 - Psyr_0451 0.78 -0.6
487,652 - Psyr_0451 0.78 -1.6
487,652 - Psyr_0451 0.78 +1.4
487,752 - Psyr_0451 0.89 +1.3
487,752 - Psyr_0451 0.89 +2.0
487,813 - +0.2
487,813 - -0.6
487,865 + -0.6
487,872 - +0.7
487,872 - -0.5
487,894 + -1.2
487,894 + +1.1
487,904 + -0.4
487,904 + +2.0
487,904 + +0.1
487,904 + -0.1
487,904 + -1.0
487,904 + -0.1
487,904 + -2.0
487,904 + +1.4
487,904 + +1.2
487,905 - -1.5
487,905 - -0.4
487,905 - +0.3
487,905 - +0.1
487,905 - +0.4
487,905 - +0.0
487,905 - +1.1
487,905 - +0.0
487,905 - +0.3
487,905 - -1.4
487,905 - +1.7
487,905 - +0.2
487,905 - +1.8
487,905 - +2.1

Or see this region's nucleotide sequence