Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0442 and Psyr_0443 overlap by 1 nucleotides Psyr_0443 and Psyr_0444 are separated by 1 nucleotides Psyr_0444 and Psyr_0445 overlap by 8 nucleotides
Psyr_0442: Psyr_0442 - Malonate decarboxylase, alpha subunit, at 479,613 to 481,289
_0442
Psyr_0443: Psyr_0443 - Triphosphoribosyl-dephospho-CoA synthase, at 481,289 to 482,164
_0443
Psyr_0444: Psyr_0444 - Malonate decarboxylase delta subunit, at 482,166 to 482,465
_0444
Psyr_0445: Psyr_0445 - malonate decarboxylase, beta subunit, at 482,458 to 483,309
_0445
Position (kb) 481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 480.357 kb on + strand, within Psyr_0442 at 480.358 kb on - strand, within Psyr_0442 at 480.358 kb on - strand, within Psyr_0442 at 480.358 kb on - strand, within Psyr_0442 at 480.358 kb on - strand, within Psyr_0442 at 480.436 kb on - strand, within Psyr_0442 at 480.436 kb on - strand, within Psyr_0442 at 480.573 kb on + strand, within Psyr_0442 at 480.574 kb on - strand, within Psyr_0442 at 480.574 kb on - strand, within Psyr_0442 at 480.574 kb on - strand, within Psyr_0442 at 480.849 kb on + strand, within Psyr_0442 at 480.987 kb on + strand, within Psyr_0442 at 480.987 kb on + strand, within Psyr_0442 at 480.988 kb on - strand, within Psyr_0442 at 481.032 kb on + strand, within Psyr_0442 at 481.038 kb on + strand, within Psyr_0442 at 481.038 kb on + strand, within Psyr_0442 at 481.039 kb on - strand, within Psyr_0442 at 481.039 kb on - strand, within Psyr_0442 at 481.258 kb on - strand at 481.258 kb on - strand at 481.258 kb on - strand at 481.258 kb on - strand at 481.258 kb on - strand at 481.600 kb on + strand, within Psyr_0443 at 481.600 kb on + strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.603 kb on + strand, within Psyr_0443 at 481.604 kb on - strand, within Psyr_0443 at 481.604 kb on - strand, within Psyr_0443 at 481.853 kb on - strand, within Psyr_0443 at 481.853 kb on - strand, within Psyr_0443 at 481.916 kb on - strand, within Psyr_0443 at 481.998 kb on - strand, within Psyr_0443 at 482.423 kb on + strand, within Psyr_0444 at 482.971 kb on + strand, within Psyr_0445 at 482.971 kb on + strand, within Psyr_0445 at 482.972 kb on - strand, within Psyr_0445 at 483.049 kb on + strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 480,357 + Psyr_0442 0.44 +0.1 480,358 - Psyr_0442 0.44 -3.8 480,358 - Psyr_0442 0.44 +3.2 480,358 - Psyr_0442 0.44 -0.1 480,358 - Psyr_0442 0.44 -0.6 480,436 - Psyr_0442 0.49 -0.8 480,436 - Psyr_0442 0.49 +0.4 480,573 + Psyr_0442 0.57 -0.9 480,574 - Psyr_0442 0.57 -1.6 480,574 - Psyr_0442 0.57 +1.0 480,574 - Psyr_0442 0.57 +1.2 480,849 + Psyr_0442 0.74 +0.1 480,987 + Psyr_0442 0.82 +0.2 480,987 + Psyr_0442 0.82 +0.2 480,988 - Psyr_0442 0.82 -2.5 481,032 + Psyr_0442 0.85 -2.0 481,038 + Psyr_0442 0.85 -1.6 481,038 + Psyr_0442 0.85 -2.4 481,039 - Psyr_0442 0.85 -1.0 481,039 - Psyr_0442 0.85 -0.1 481,258 - +1.4 481,258 - +0.3 481,258 - +0.7 481,258 - +0.5 481,258 - -0.1 481,600 + Psyr_0443 0.36 -3.4 481,600 + Psyr_0443 0.36 +0.7 481,601 - Psyr_0443 0.36 -0.0 481,601 - Psyr_0443 0.36 +0.5 481,601 - Psyr_0443 0.36 +0.8 481,603 + Psyr_0443 0.36 -0.5 481,604 - Psyr_0443 0.36 +0.5 481,604 - Psyr_0443 0.36 +1.7 481,853 - Psyr_0443 0.64 +1.1 481,853 - Psyr_0443 0.64 -2.0 481,916 - Psyr_0443 0.72 +0.5 481,998 - Psyr_0443 0.81 +1.3 482,423 + Psyr_0444 0.86 -0.5 482,971 + Psyr_0445 0.60 +0.3 482,971 + Psyr_0445 0.60 +0.2 482,972 - Psyr_0445 0.60 -0.9 483,049 + Psyr_0445 0.69 +0.6 483,050 - Psyr_0445 0.69 +0.6 483,050 - Psyr_0445 0.69 -0.0 483,050 - Psyr_0445 0.69 -0.6
Or see this region's nucleotide sequence