Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0413

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0412 and Psyr_0413 are separated by 333 nucleotidesPsyr_0413 and Psyr_0414 are separated by 131 nucleotides Psyr_0412: Psyr_0412 - glutamate synthase (NADPH) small subunit, at 446,857 to 448,275 _0412 Psyr_0413: Psyr_0413 - conserved hypothetical protein, at 448,609 to 451,833 _0413 Psyr_0414: Psyr_0414 - uroporphyrinogen decarboxylase, at 451,965 to 453,029 _0414 Position (kb) 448 449 450 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 447.892 kb on + strand, within Psyr_0412at 448.144 kb on + strandat 448.144 kb on + strandat 448.145 kb on - strandat 448.145 kb on - strandat 448.145 kb on - strandat 448.145 kb on - strandat 448.221 kb on + strandat 448.339 kb on + strandat 448.339 kb on + strandat 448.340 kb on - strandat 448.436 kb on - strandat 448.532 kb on - strandat 448.532 kb on - strandat 448.558 kb on + strandat 448.558 kb on + strandat 448.558 kb on + strandat 448.594 kb on + strandat 448.595 kb on - strandat 448.927 kb on - strandat 448.954 kb on + strand, within Psyr_0413at 448.954 kb on + strand, within Psyr_0413at 448.954 kb on + strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.955 kb on - strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.956 kb on + strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 448.957 kb on - strand, within Psyr_0413at 449.052 kb on + strand, within Psyr_0413at 449.052 kb on + strand, within Psyr_0413at 449.053 kb on - strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.087 kb on + strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.088 kb on - strand, within Psyr_0413at 449.369 kb on + strand, within Psyr_0413at 449.370 kb on - strand, within Psyr_0413at 449.466 kb on + strand, within Psyr_0413at 449.466 kb on + strand, within Psyr_0413at 449.466 kb on + strand, within Psyr_0413at 449.467 kb on - strand, within Psyr_0413at 449.467 kb on - strand, within Psyr_0413at 449.470 kb on + strand, within Psyr_0413at 449.470 kb on + strand, within Psyr_0413at 449.470 kb on + strand, within Psyr_0413at 449.470 kb on + strand, within Psyr_0413at 449.471 kb on - strand, within Psyr_0413at 449.471 kb on - strand, within Psyr_0413at 449.471 kb on - strand, within Psyr_0413at 449.471 kb on - strand, within Psyr_0413at 449.471 kb on - strand, within Psyr_0413at 449.471 kb on - strand, within Psyr_0413at 449.472 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.563 kb on + strand, within Psyr_0413at 449.564 kb on - strand, within Psyr_0413at 449.564 kb on - strand, within Psyr_0413at 449.564 kb on - strand, within Psyr_0413at 449.564 kb on - strand, within Psyr_0413at 449.624 kb on - strand, within Psyr_0413at 449.686 kb on + strand, within Psyr_0413at 449.853 kb on - strand, within Psyr_0413at 449.917 kb on + strand, within Psyr_0413at 449.917 kb on + strand, within Psyr_0413at 449.917 kb on + strand, within Psyr_0413at 449.918 kb on - strand, within Psyr_0413at 449.918 kb on - strand, within Psyr_0413at 449.999 kb on - strand, within Psyr_0413at 449.999 kb on - strand, within Psyr_0413at 449.999 kb on - strand, within Psyr_0413at 449.999 kb on - strand, within Psyr_0413at 450.105 kb on + strand, within Psyr_0413at 450.121 kb on + strand, within Psyr_0413at 450.121 kb on + strand, within Psyr_0413at 450.122 kb on - strand, within Psyr_0413at 450.122 kb on - strand, within Psyr_0413at 450.122 kb on - strand, within Psyr_0413at 450.122 kb on - strand, within Psyr_0413at 450.122 kb on - strand, within Psyr_0413at 450.127 kb on + strand, within Psyr_0413at 450.127 kb on + strand, within Psyr_0413at 450.127 kb on + strand, within Psyr_0413at 450.127 kb on + strand, within Psyr_0413at 450.128 kb on - strand, within Psyr_0413at 450.128 kb on - strand, within Psyr_0413at 450.128 kb on - strand, within Psyr_0413at 450.128 kb on - strand, within Psyr_0413at 450.128 kb on - strand, within Psyr_0413at 450.128 kb on - strand, within Psyr_0413at 450.353 kb on + strand, within Psyr_0413at 450.354 kb on - strand, within Psyr_0413at 450.499 kb on + strand, within Psyr_0413at 450.500 kb on - strand, within Psyr_0413at 450.618 kb on - strand, within Psyr_0413at 450.618 kb on - strand, within Psyr_0413at 450.737 kb on + strand, within Psyr_0413at 450.737 kb on + strand, within Psyr_0413at 450.737 kb on + strand, within Psyr_0413at 450.738 kb on - strand, within Psyr_0413at 450.738 kb on - strand, within Psyr_0413at 450.738 kb on - strand, within Psyr_0413at 450.738 kb on - strand, within Psyr_0413at 450.738 kb on - strand, within Psyr_0413at 450.738 kb on - strand, within Psyr_0413at 450.764 kb on - strand, within Psyr_0413at 450.764 kb on - strand, within Psyr_0413at 450.883 kb on + strand, within Psyr_0413at 450.933 kb on + strand, within Psyr_0413at 451.051 kb on + strand, within Psyr_0413at 451.052 kb on - strand, within Psyr_0413at 451.052 kb on - strand, within Psyr_0413at 451.059 kb on - strand, within Psyr_0413at 451.059 kb on - strand, within Psyr_0413at 451.108 kb on + strand, within Psyr_0413at 451.109 kb on - strand, within Psyr_0413at 451.109 kb on - strand, within Psyr_0413at 451.270 kb on + strand, within Psyr_0413at 451.318 kb on + strand, within Psyr_0413at 451.319 kb on - strand, within Psyr_0413at 451.319 kb on - strand, within Psyr_0413at 451.343 kb on - strand, within Psyr_0413at 451.355 kb on - strand, within Psyr_0413at 451.408 kb on + strand, within Psyr_0413at 451.408 kb on + strand, within Psyr_0413at 451.409 kb on - strand, within Psyr_0413at 451.409 kb on - strand, within Psyr_0413at 451.411 kb on + strand, within Psyr_0413at 451.412 kb on - strand, within Psyr_0413at 451.562 kb on - strandat 451.562 kb on - strandat 451.562 kb on - strandat 451.562 kb on - strandat 451.563 kb on + strandat 451.563 kb on + strandat 451.563 kb on + strandat 451.563 kb on + strandat 451.563 kb on + strandat 451.563 kb on + strandat 451.563 kb on + strandat 451.564 kb on - strandat 451.564 kb on - strandat 451.564 kb on - strandat 451.564 kb on - strandat 451.564 kb on - strandat 451.695 kb on + strandat 451.695 kb on + strandat 451.772 kb on + strandat 451.831 kb on + strandat 451.831 kb on + strandat 451.832 kb on - strandat 451.832 kb on - strandat 451.832 kb on - strandat 451.832 kb on - strandat 451.832 kb on - strandat 451.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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447,892 + Psyr_0412 0.73 -0.6
448,144 + +0.2
448,144 + +1.0
448,145 - -0.0
448,145 - +1.1
448,145 - +1.0
448,145 - +1.0
448,221 + +1.8
448,339 + -0.5
448,339 + +0.9
448,340 - +0.2
448,436 - +0.7
448,532 - +0.3
448,532 - -1.1
448,558 + +0.1
448,558 + +0.6
448,558 + +0.6
448,594 + +1.0
448,595 - -0.0
448,927 - +0.7
448,954 + Psyr_0413 0.11 -0.5
448,954 + Psyr_0413 0.11 -0.3
448,954 + Psyr_0413 0.11 -0.0
448,955 - Psyr_0413 0.11 -0.9
448,955 - Psyr_0413 0.11 -0.5
448,955 - Psyr_0413 0.11 +1.2
448,955 - Psyr_0413 0.11 -3.3
448,955 - Psyr_0413 0.11 +0.6
448,955 - Psyr_0413 0.11 -0.9
448,955 - Psyr_0413 0.11 +0.7
448,956 + Psyr_0413 0.11 -1.7
448,956 + Psyr_0413 0.11 +0.2
448,956 + Psyr_0413 0.11 +0.8
448,956 + Psyr_0413 0.11 -0.6
448,956 + Psyr_0413 0.11 -1.2
448,957 - Psyr_0413 0.11 +0.3
448,957 - Psyr_0413 0.11 +3.0
448,957 - Psyr_0413 0.11 -0.2
448,957 - Psyr_0413 0.11 +1.0
449,052 + Psyr_0413 0.14 +0.4
449,052 + Psyr_0413 0.14 -1.2
449,053 - Psyr_0413 0.14 +0.2
449,087 + Psyr_0413 0.15 -0.9
449,087 + Psyr_0413 0.15 -0.7
449,087 + Psyr_0413 0.15 +1.8
449,087 + Psyr_0413 0.15 +0.7
449,088 - Psyr_0413 0.15 -0.3
449,088 - Psyr_0413 0.15 +1.8
449,088 - Psyr_0413 0.15 -0.5
449,088 - Psyr_0413 0.15 +0.0
449,088 - Psyr_0413 0.15 -0.3
449,088 - Psyr_0413 0.15 -1.2
449,088 - Psyr_0413 0.15 -0.3
449,369 + Psyr_0413 0.24 +0.3
449,370 - Psyr_0413 0.24 -2.3
449,466 + Psyr_0413 0.27 +0.7
449,466 + Psyr_0413 0.27 -0.3
449,466 + Psyr_0413 0.27 +0.3
449,467 - Psyr_0413 0.27 -0.9
449,467 - Psyr_0413 0.27 +0.3
449,470 + Psyr_0413 0.27 +0.6
449,470 + Psyr_0413 0.27 +1.7
449,470 + Psyr_0413 0.27 +0.5
449,470 + Psyr_0413 0.27 +0.9
449,471 - Psyr_0413 0.27 -1.2
449,471 - Psyr_0413 0.27 +1.3
449,471 - Psyr_0413 0.27 +2.8
449,471 - Psyr_0413 0.27 +1.8
449,471 - Psyr_0413 0.27 -0.8
449,471 - Psyr_0413 0.27 -2.1
449,472 + Psyr_0413 0.27 -0.1
449,563 + Psyr_0413 0.30 +1.1
449,563 + Psyr_0413 0.30 +0.2
449,563 + Psyr_0413 0.30 +0.8
449,563 + Psyr_0413 0.30 -1.2
449,563 + Psyr_0413 0.30 -0.7
449,563 + Psyr_0413 0.30 -0.9
449,563 + Psyr_0413 0.30 +0.2
449,563 + Psyr_0413 0.30 -0.1
449,563 + Psyr_0413 0.30 -1.2
449,563 + Psyr_0413 0.30 +0.5
449,564 - Psyr_0413 0.30 +0.5
449,564 - Psyr_0413 0.30 -0.2
449,564 - Psyr_0413 0.30 -1.8
449,564 - Psyr_0413 0.30 +0.2
449,624 - Psyr_0413 0.31 -2.3
449,686 + Psyr_0413 0.33 +0.4
449,853 - Psyr_0413 0.39 -0.9
449,917 + Psyr_0413 0.41 -0.8
449,917 + Psyr_0413 0.41 +0.4
449,917 + Psyr_0413 0.41 -1.7
449,918 - Psyr_0413 0.41 +0.3
449,918 - Psyr_0413 0.41 -0.0
449,999 - Psyr_0413 0.43 -0.3
449,999 - Psyr_0413 0.43 +0.4
449,999 - Psyr_0413 0.43 -1.5
449,999 - Psyr_0413 0.43 -0.6
450,105 + Psyr_0413 0.46 -0.3
450,121 + Psyr_0413 0.47 -1.3
450,121 + Psyr_0413 0.47 -0.6
450,122 - Psyr_0413 0.47 +1.3
450,122 - Psyr_0413 0.47 -0.4
450,122 - Psyr_0413 0.47 +0.6
450,122 - Psyr_0413 0.47 +0.0
450,122 - Psyr_0413 0.47 -2.1
450,127 + Psyr_0413 0.47 -0.5
450,127 + Psyr_0413 0.47 +0.0
450,127 + Psyr_0413 0.47 -1.0
450,127 + Psyr_0413 0.47 -0.2
450,128 - Psyr_0413 0.47 +0.4
450,128 - Psyr_0413 0.47 +0.7
450,128 - Psyr_0413 0.47 -0.2
450,128 - Psyr_0413 0.47 +0.5
450,128 - Psyr_0413 0.47 +0.9
450,128 - Psyr_0413 0.47 -1.7
450,353 + Psyr_0413 0.54 -0.5
450,354 - Psyr_0413 0.54 -0.3
450,499 + Psyr_0413 0.59 +2.3
450,500 - Psyr_0413 0.59 +0.7
450,618 - Psyr_0413 0.62 -1.3
450,618 - Psyr_0413 0.62 +0.7
450,737 + Psyr_0413 0.66 +0.2
450,737 + Psyr_0413 0.66 +0.5
450,737 + Psyr_0413 0.66 +0.3
450,738 - Psyr_0413 0.66 -1.1
450,738 - Psyr_0413 0.66 +0.4
450,738 - Psyr_0413 0.66 -1.1
450,738 - Psyr_0413 0.66 +0.4
450,738 - Psyr_0413 0.66 -0.4
450,738 - Psyr_0413 0.66 +0.5
450,764 - Psyr_0413 0.67 -1.5
450,764 - Psyr_0413 0.67 -0.5
450,883 + Psyr_0413 0.71 -0.6
450,933 + Psyr_0413 0.72 +0.7
451,051 + Psyr_0413 0.76 -0.0
451,052 - Psyr_0413 0.76 -0.0
451,052 - Psyr_0413 0.76 -2.0
451,059 - Psyr_0413 0.76 +0.9
451,059 - Psyr_0413 0.76 +0.2
451,108 + Psyr_0413 0.77 +0.8
451,109 - Psyr_0413 0.78 +1.0
451,109 - Psyr_0413 0.78 +0.5
451,270 + Psyr_0413 0.83 -0.6
451,318 + Psyr_0413 0.84 +2.1
451,319 - Psyr_0413 0.84 -1.0
451,319 - Psyr_0413 0.84 -0.0
451,343 - Psyr_0413 0.85 -0.9
451,355 - Psyr_0413 0.85 +0.6
451,408 + Psyr_0413 0.87 -1.3
451,408 + Psyr_0413 0.87 +0.8
451,409 - Psyr_0413 0.87 -0.2
451,409 - Psyr_0413 0.87 +0.9
451,411 + Psyr_0413 0.87 +2.7
451,412 - Psyr_0413 0.87 -0.0
451,562 - +0.6
451,562 - +0.2
451,562 - +0.7
451,562 - -2.5
451,563 + +1.1
451,563 + +0.7
451,563 + -2.5
451,563 + +3.2
451,563 + +0.1
451,563 + -0.2
451,563 + -0.1
451,564 - -1.1
451,564 - -0.7
451,564 - -0.4
451,564 - +0.3
451,564 - -1.2
451,695 + +0.6
451,695 + +0.7
451,772 + -0.6
451,831 + -0.1
451,831 + +0.1
451,832 - +1.0
451,832 - +0.2
451,832 - +1.7
451,832 - +1.0
451,832 - +0.8
451,949 + +0.6

Or see this region's nucleotide sequence