Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0380 and Psyr_0381 are separated by 88 nucleotides Psyr_0381 and Psyr_0382 overlap by 4 nucleotides Psyr_0382 and Psyr_0383 overlap by 4 nucleotides Psyr_0383 and Psyr_0384 are separated by 4 nucleotides Psyr_0384 and Psyr_0385 are separated by 44 nucleotides
Psyr_0380: Psyr_0380 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 410,246 to 412,162
_0380
Psyr_0381: Psyr_0381 - Conserved hypothetical protein 46, at 412,251 to 412,958
_0381
Psyr_0382: Psyr_0382 - Sec-independent periplasmic protein translocase, at 412,955 to 413,755
_0382
Psyr_0383: Psyr_0383 - Twin-arginine translocation protein TatB, at 413,752 to 414,228
_0383
Psyr_0384: Psyr_0384 - Twin-arginine translocation protein TatA/E, at 414,233 to 414,508
_0384
Psyr_0385: Psyr_0385 - phosphoribosyl-ATP pyrophosphatase, at 414,553 to 414,885
_0385
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.188 kb on + strand at 412.188 kb on + strand at 412.188 kb on + strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.189 kb on - strand at 412.193 kb on - strand at 412.235 kb on - strand at 412.252 kb on + strand at 412.252 kb on + strand at 412.252 kb on + strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 412.253 kb on - strand at 413.158 kb on - strand, within Psyr_0382 at 413.617 kb on - strand, within Psyr_0382 at 413.635 kb on - strand, within Psyr_0382 at 414.028 kb on - strand, within Psyr_0383 at 414.028 kb on - strand, within Psyr_0383 at 414.028 kb on - strand, within Psyr_0383 at 414.128 kb on - strand, within Psyr_0383 at 414.459 kb on - strand, within Psyr_0384 at 414.459 kb on - strand, within Psyr_0384 at 414.693 kb on - strand, within Psyr_0385
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 412,188 + +0.1 412,188 + -1.7 412,188 + -0.7 412,189 - +1.0 412,189 - -0.5 412,189 - -2.1 412,189 - +0.9 412,189 - -0.1 412,189 - +1.0 412,189 - +1.5 412,189 - -0.1 412,193 - +0.1 412,235 - -0.6 412,252 + -0.8 412,252 + +1.0 412,252 + +0.6 412,253 - +0.1 412,253 - -1.0 412,253 - +2.2 412,253 - +0.2 412,253 - +1.1 412,253 - -1.3 413,158 - Psyr_0382 0.25 -0.0 413,617 - Psyr_0382 0.83 -2.5 413,635 - Psyr_0382 0.85 +1.0 414,028 - Psyr_0383 0.58 -1.0 414,028 - Psyr_0383 0.58 -2.2 414,028 - Psyr_0383 0.58 -1.6 414,128 - Psyr_0383 0.79 -1.0 414,459 - Psyr_0384 0.82 -1.3 414,459 - Psyr_0384 0.82 +1.0 414,693 - Psyr_0385 0.42 -1.2
Or see this region's nucleotide sequence