Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0361

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0360 and Psyr_0361 are separated by 12 nucleotidesPsyr_0361 and Psyr_0362 overlap by 4 nucleotidesPsyr_0362 and Psyr_0363 are separated by 103 nucleotides Psyr_0360: Psyr_0360 - serine O-acetyltransferase, at 385,612 to 386,565 _0360 Psyr_0361: Psyr_0361 - conserved hypothetical protein, at 386,578 to 387,285 _0361 Psyr_0362: Psyr_0362 - Sigma-70 region 2, at 387,282 to 387,848 _0362 Psyr_0363: Psyr_0363 - conserved hypothetical protein, at 387,952 to 388,485 _0363 Position (kb) 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 385.619 kb on - strandat 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.924 kb on + strand, within Psyr_0360at 386.050 kb on + strand, within Psyr_0360at 386.050 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.563 kb on + strandat 386.563 kb on + strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.829 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.850 kb on + strand, within Psyr_0361at 386.910 kb on - strand, within Psyr_0361at 386.910 kb on - strand, within Psyr_0361at 387.069 kb on + strand, within Psyr_0361at 387.199 kb on + strand, within Psyr_0361at 387.199 kb on + strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.240 kb on - strandat 387.240 kb on - strandat 387.240 kb on - strandat 387.272 kb on - strandat 387.272 kb on - strandat 387.272 kb on - strandat 387.390 kb on + strand, within Psyr_0362at 387.390 kb on + strand, within Psyr_0362at 387.390 kb on + strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.391 kb on - strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.408 kb on - strand, within Psyr_0362at 387.873 kb on + strandat 387.873 kb on + strandat 387.874 kb on - strandat 387.874 kb on - strandat 387.914 kb on - strandat 387.914 kb on - strandat 387.918 kb on + strandat 387.918 kb on + strandat 387.918 kb on + strandat 387.919 kb on - strandat 387.919 kb on - strandat 387.919 kb on - strandat 387.919 kb on - strandat 387.919 kb on - strandat 387.919 kb on - strandat 387.919 kb on - strandat 387.940 kb on + strandat 387.975 kb on - strandat 387.986 kb on + strandat 387.986 kb on + strandat 387.987 kb on - strandat 388.073 kb on + strand, within Psyr_0363at 388.073 kb on + strand, within Psyr_0363at 388.074 kb on - strand, within Psyr_0363at 388.074 kb on - strand, within Psyr_0363at 388.074 kb on - strand, within Psyr_0363at 388.074 kb on - strand, within Psyr_0363at 388.074 kb on - strand, within Psyr_0363at 388.130 kb on + strand, within Psyr_0363at 388.210 kb on - strand, within Psyr_0363at 388.223 kb on + strand, within Psyr_0363at 388.224 kb on - strand, within Psyr_0363at 388.226 kb on + strand, within Psyr_0363at 388.226 kb on + strand, within Psyr_0363at 388.226 kb on + strand, within Psyr_0363at 388.226 kb on + strand, within Psyr_0363at 388.227 kb on - strand, within Psyr_0363at 388.227 kb on - strand, within Psyr_0363at 388.227 kb on - strand, within Psyr_0363at 388.227 kb on - strand, within Psyr_0363at 388.227 kb on - strand, within Psyr_0363at 388.227 kb on - strand, within Psyr_0363

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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385,619 - -1.3
385,858 + Psyr_0360 0.26 +0.4
385,858 + Psyr_0360 0.26 -0.1
385,858 + Psyr_0360 0.26 +1.1
385,858 + Psyr_0360 0.26 +0.0
385,858 + Psyr_0360 0.26 +1.0
385,858 + Psyr_0360 0.26 +0.2
385,858 + Psyr_0360 0.26 -0.4
385,858 + Psyr_0360 0.26 -1.1
385,858 + Psyr_0360 0.26 +1.1
385,858 + Psyr_0360 0.26 +0.2
385,858 + Psyr_0360 0.26 -0.3
385,858 + Psyr_0360 0.26 -0.5
385,858 + Psyr_0360 0.26 -1.8
385,858 + Psyr_0360 0.26 -0.6
385,859 - Psyr_0360 0.26 -0.0
385,859 - Psyr_0360 0.26 +1.0
385,859 - Psyr_0360 0.26 +0.1
385,859 - Psyr_0360 0.26 -0.9
385,859 - Psyr_0360 0.26 -0.9
385,859 - Psyr_0360 0.26 -0.7
385,859 - Psyr_0360 0.26 -0.6
385,859 - Psyr_0360 0.26 -1.3
385,859 - Psyr_0360 0.26 -2.0
385,924 + Psyr_0360 0.33 +0.1
386,050 + Psyr_0360 0.46 -0.5
386,050 + Psyr_0360 0.46 +1.1
386,140 + Psyr_0360 0.55 +0.5
386,140 + Psyr_0360 0.55 -1.8
386,140 + Psyr_0360 0.55 -1.3
386,140 + Psyr_0360 0.55 +0.6
386,140 + Psyr_0360 0.55 -3.1
386,140 + Psyr_0360 0.55 +0.8
386,140 + Psyr_0360 0.55 -2.1
386,141 - Psyr_0360 0.55 -0.7
386,141 - Psyr_0360 0.55 -0.7
386,314 + Psyr_0360 0.74 +0.0
386,314 + Psyr_0360 0.74 -0.7
386,315 - Psyr_0360 0.74 -0.4
386,315 - Psyr_0360 0.74 -3.3
386,419 + Psyr_0360 0.85 +1.6
386,419 + Psyr_0360 0.85 -0.4
386,419 + Psyr_0360 0.85 +1.6
386,420 - Psyr_0360 0.85 -0.5
386,420 - Psyr_0360 0.85 +0.6
386,420 - Psyr_0360 0.85 -0.3
386,420 - Psyr_0360 0.85 +1.1
386,420 - Psyr_0360 0.85 -0.9
386,420 - Psyr_0360 0.85 +0.2
386,420 - Psyr_0360 0.85 -0.2
386,563 + +0.9
386,563 + +0.4
386,564 - +1.6
386,564 - +1.8
386,564 - +0.9
386,564 - +1.7
386,829 + Psyr_0361 0.35 +0.1
386,836 + Psyr_0361 0.36 +0.9
386,836 + Psyr_0361 0.36 +0.9
386,836 + Psyr_0361 0.36 +0.9
386,836 + Psyr_0361 0.36 -2.3
386,837 - Psyr_0361 0.37 +1.7
386,837 - Psyr_0361 0.37 +1.4
386,837 - Psyr_0361 0.37 -0.4
386,837 - Psyr_0361 0.37 -2.5
386,850 + Psyr_0361 0.38 -1.3
386,910 - Psyr_0361 0.47 +0.3
386,910 - Psyr_0361 0.47 +3.2
387,069 + Psyr_0361 0.69 -0.3
387,199 + Psyr_0361 0.88 -1.4
387,199 + Psyr_0361 0.88 -0.3
387,200 - Psyr_0361 0.88 +1.0
387,200 - Psyr_0361 0.88 +1.1
387,200 - Psyr_0361 0.88 -0.5
387,200 - Psyr_0361 0.88 +3.1
387,200 - Psyr_0361 0.88 +0.8
387,235 + -1.2
387,235 + +0.2
387,235 + +1.0
387,235 + +1.2
387,235 + +2.6
387,235 + +0.7
387,236 - +0.0
387,236 - +0.3
387,236 - -1.0
387,236 - -2.2
387,236 - -0.8
387,236 - -0.2
387,236 - +0.7
387,239 + -0.1
387,239 + +1.2
387,239 + +0.2
387,239 + -1.0
387,239 + +0.2
387,240 - +0.2
387,240 - +1.2
387,240 - +0.2
387,272 - +1.1
387,272 - +3.0
387,272 - +0.2
387,390 + Psyr_0362 0.19 -0.5
387,390 + Psyr_0362 0.19 -0.1
387,390 + Psyr_0362 0.19 +1.7
387,391 - Psyr_0362 0.19 +0.1
387,391 - Psyr_0362 0.19 +2.2
387,391 - Psyr_0362 0.19 +0.2
387,391 - Psyr_0362 0.19 -0.8
387,391 - Psyr_0362 0.19 -0.1
387,394 + Psyr_0362 0.20 +0.3
387,394 + Psyr_0362 0.20 +0.7
387,394 + Psyr_0362 0.20 -0.5
387,395 - Psyr_0362 0.20 -0.4
387,395 - Psyr_0362 0.20 -1.3
387,395 - Psyr_0362 0.20 +1.0
387,395 - Psyr_0362 0.20 +1.0
387,395 - Psyr_0362 0.20 -0.9
387,395 - Psyr_0362 0.20 +0.6
387,407 + Psyr_0362 0.22 -1.0
387,407 + Psyr_0362 0.22 -1.0
387,407 + Psyr_0362 0.22 +2.4
387,407 + Psyr_0362 0.22 -0.4
387,408 - Psyr_0362 0.22 -0.5
387,873 + -0.6
387,873 + +0.5
387,874 - -0.3
387,874 - -0.1
387,914 - +1.1
387,914 - -0.7
387,918 + -0.3
387,918 + +1.5
387,918 + -0.2
387,919 - +0.5
387,919 - -0.8
387,919 - -0.6
387,919 - +0.8
387,919 - -2.1
387,919 - +1.5
387,919 - -0.1
387,940 + -0.0
387,975 - +0.4
387,986 + +0.5
387,986 + +1.3
387,987 - -0.2
388,073 + Psyr_0363 0.23 +0.9
388,073 + Psyr_0363 0.23 -0.4
388,074 - Psyr_0363 0.23 +0.1
388,074 - Psyr_0363 0.23 +0.6
388,074 - Psyr_0363 0.23 +1.0
388,074 - Psyr_0363 0.23 -2.0
388,074 - Psyr_0363 0.23 +1.3
388,130 + Psyr_0363 0.33 -0.0
388,210 - Psyr_0363 0.48 +0.6
388,223 + Psyr_0363 0.51 -1.5
388,224 - Psyr_0363 0.51 -2.7
388,226 + Psyr_0363 0.51 -1.9
388,226 + Psyr_0363 0.51 -0.6
388,226 + Psyr_0363 0.51 -0.1
388,226 + Psyr_0363 0.51 +1.6
388,227 - Psyr_0363 0.51 -1.9
388,227 - Psyr_0363 0.51 +1.5
388,227 - Psyr_0363 0.51 +0.6
388,227 - Psyr_0363 0.51 -0.3
388,227 - Psyr_0363 0.51 +1.0
388,227 - Psyr_0363 0.51 -0.8

Or see this region's nucleotide sequence