Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0359 and Psyr_0360 are separated by 197 nucleotides Psyr_0360 and Psyr_0361 are separated by 12 nucleotides Psyr_0361 and Psyr_0362 overlap by 4 nucleotides
Psyr_0359: Psyr_0359 - D-cysteine desulfhydrase, at 384,416 to 385,414
_0359
Psyr_0360: Psyr_0360 - serine O-acetyltransferase, at 385,612 to 386,565
_0360
Psyr_0361: Psyr_0361 - conserved hypothetical protein, at 386,578 to 387,285
_0361
Psyr_0362: Psyr_0362 - Sigma-70 region 2, at 387,282 to 387,848
_0362
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 384.639 kb on + strand, within Psyr_0359 at 384.639 kb on + strand, within Psyr_0359 at 384.640 kb on - strand, within Psyr_0359 at 384.640 kb on - strand, within Psyr_0359 at 384.909 kb on + strand, within Psyr_0359 at 384.909 kb on + strand, within Psyr_0359 at 384.909 kb on + strand, within Psyr_0359 at 384.910 kb on - strand, within Psyr_0359 at 384.910 kb on - strand, within Psyr_0359 at 384.955 kb on - strand, within Psyr_0359 at 385.037 kb on + strand, within Psyr_0359 at 385.038 kb on - strand, within Psyr_0359 at 385.038 kb on - strand, within Psyr_0359 at 385.038 kb on - strand, within Psyr_0359 at 385.245 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.308 kb on + strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.309 kb on - strand, within Psyr_0359 at 385.312 kb on + strand, within Psyr_0359 at 385.312 kb on + strand, within Psyr_0359 at 385.312 kb on + strand, within Psyr_0359 at 385.434 kb on - strand at 385.434 kb on - strand at 385.450 kb on - strand at 385.451 kb on + strand at 385.451 kb on + strand at 385.451 kb on + strand at 385.452 kb on - strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.504 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.559 kb on + strand at 385.560 kb on - strand at 385.619 kb on - strand at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.858 kb on + strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.859 kb on - strand, within Psyr_0360 at 385.924 kb on + strand, within Psyr_0360 at 386.050 kb on + strand, within Psyr_0360 at 386.050 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.140 kb on + strand, within Psyr_0360 at 386.141 kb on - strand, within Psyr_0360 at 386.141 kb on - strand, within Psyr_0360 at 386.314 kb on + strand, within Psyr_0360 at 386.314 kb on + strand, within Psyr_0360 at 386.315 kb on - strand, within Psyr_0360 at 386.315 kb on - strand, within Psyr_0360 at 386.419 kb on + strand, within Psyr_0360 at 386.419 kb on + strand, within Psyr_0360 at 386.419 kb on + strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.420 kb on - strand, within Psyr_0360 at 386.563 kb on + strand at 386.563 kb on + strand at 386.564 kb on - strand at 386.564 kb on - strand at 386.564 kb on - strand at 386.564 kb on - strand at 386.829 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.836 kb on + strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.837 kb on - strand, within Psyr_0361 at 386.850 kb on + strand, within Psyr_0361 at 386.910 kb on - strand, within Psyr_0361 at 386.910 kb on - strand, within Psyr_0361 at 387.069 kb on + strand, within Psyr_0361 at 387.199 kb on + strand, within Psyr_0361 at 387.199 kb on + strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.200 kb on - strand, within Psyr_0361 at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.235 kb on + strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.236 kb on - strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.239 kb on + strand at 387.240 kb on - strand at 387.240 kb on - strand at 387.240 kb on - strand at 387.272 kb on - strand at 387.272 kb on - strand at 387.272 kb on - strand at 387.390 kb on + strand, within Psyr_0362 at 387.390 kb on + strand, within Psyr_0362 at 387.390 kb on + strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.391 kb on - strand, within Psyr_0362 at 387.394 kb on + strand, within Psyr_0362 at 387.394 kb on + strand, within Psyr_0362 at 387.394 kb on + strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.395 kb on - strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.407 kb on + strand, within Psyr_0362 at 387.408 kb on - strand, within Psyr_0362
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 384,639 + Psyr_0359 0.22 +0.6 384,639 + Psyr_0359 0.22 +1.0 384,640 - Psyr_0359 0.22 +2.6 384,640 - Psyr_0359 0.22 -1.3 384,909 + Psyr_0359 0.49 -0.4 384,909 + Psyr_0359 0.49 +0.9 384,909 + Psyr_0359 0.49 +0.3 384,910 - Psyr_0359 0.49 -2.5 384,910 - Psyr_0359 0.49 -1.0 384,955 - Psyr_0359 0.54 +0.3 385,037 + Psyr_0359 0.62 +0.6 385,038 - Psyr_0359 0.62 -2.2 385,038 - Psyr_0359 0.62 -1.2 385,038 - Psyr_0359 0.62 -0.6 385,245 + Psyr_0359 0.83 -0.6 385,308 + Psyr_0359 0.89 +0.6 385,308 + Psyr_0359 0.89 -0.1 385,308 + Psyr_0359 0.89 -0.5 385,308 + Psyr_0359 0.89 -1.3 385,308 + Psyr_0359 0.89 -1.0 385,308 + Psyr_0359 0.89 -0.9 385,308 + Psyr_0359 0.89 +0.3 385,308 + Psyr_0359 0.89 +0.5 385,308 + Psyr_0359 0.89 +0.5 385,308 + Psyr_0359 0.89 +1.2 385,308 + Psyr_0359 0.89 -0.6 385,308 + Psyr_0359 0.89 -0.4 385,308 + Psyr_0359 0.89 -0.5 385,308 + Psyr_0359 0.89 +0.9 385,308 + Psyr_0359 0.89 +0.2 385,308 + Psyr_0359 0.89 +0.4 385,308 + Psyr_0359 0.89 +1.4 385,308 + Psyr_0359 0.89 -0.9 385,308 + Psyr_0359 0.89 -1.6 385,309 - Psyr_0359 0.89 +0.8 385,309 - Psyr_0359 0.89 -0.1 385,309 - Psyr_0359 0.89 +1.1 385,309 - Psyr_0359 0.89 -1.0 385,309 - Psyr_0359 0.89 +1.7 385,309 - Psyr_0359 0.89 -0.5 385,309 - Psyr_0359 0.89 +0.2 385,309 - Psyr_0359 0.89 -1.2 385,309 - Psyr_0359 0.89 -0.3 385,309 - Psyr_0359 0.89 -0.4 385,309 - Psyr_0359 0.89 -1.1 385,312 + Psyr_0359 0.90 -0.8 385,312 + Psyr_0359 0.90 +0.2 385,312 + Psyr_0359 0.90 +0.6 385,434 - -1.3 385,434 - +1.6 385,450 - -0.0 385,451 + -1.6 385,451 + -0.1 385,451 + -0.3 385,452 - +0.4 385,478 + -0.7 385,478 + -0.2 385,478 + -0.8 385,478 + -1.3 385,478 + -0.2 385,478 + +0.2 385,478 + +0.4 385,478 + -2.2 385,478 + +0.1 385,479 - +1.3 385,479 - -1.3 385,479 - -1.3 385,479 - +0.3 385,479 - -1.0 385,479 - +0.1 385,479 - -0.1 385,479 - +0.3 385,504 + +1.2 385,559 + -0.2 385,559 + -1.8 385,559 + +0.6 385,559 + -0.0 385,559 + +0.3 385,559 + +1.1 385,559 + -0.0 385,560 - +0.4 385,619 - -1.3 385,858 + Psyr_0360 0.26 +0.4 385,858 + Psyr_0360 0.26 -0.1 385,858 + Psyr_0360 0.26 +1.1 385,858 + Psyr_0360 0.26 +0.0 385,858 + Psyr_0360 0.26 +1.0 385,858 + Psyr_0360 0.26 +0.2 385,858 + Psyr_0360 0.26 -0.4 385,858 + Psyr_0360 0.26 -1.1 385,858 + Psyr_0360 0.26 +1.1 385,858 + Psyr_0360 0.26 +0.2 385,858 + Psyr_0360 0.26 -0.3 385,858 + Psyr_0360 0.26 -0.5 385,858 + Psyr_0360 0.26 -1.8 385,858 + Psyr_0360 0.26 -0.6 385,859 - Psyr_0360 0.26 -0.0 385,859 - Psyr_0360 0.26 +1.0 385,859 - Psyr_0360 0.26 +0.1 385,859 - Psyr_0360 0.26 -0.9 385,859 - Psyr_0360 0.26 -0.9 385,859 - Psyr_0360 0.26 -0.7 385,859 - Psyr_0360 0.26 -0.6 385,859 - Psyr_0360 0.26 -1.3 385,859 - Psyr_0360 0.26 -2.0 385,924 + Psyr_0360 0.33 +0.1 386,050 + Psyr_0360 0.46 -0.5 386,050 + Psyr_0360 0.46 +1.1 386,140 + Psyr_0360 0.55 +0.5 386,140 + Psyr_0360 0.55 -1.8 386,140 + Psyr_0360 0.55 -1.3 386,140 + Psyr_0360 0.55 +0.6 386,140 + Psyr_0360 0.55 -3.1 386,140 + Psyr_0360 0.55 +0.8 386,140 + Psyr_0360 0.55 -2.1 386,141 - Psyr_0360 0.55 -0.7 386,141 - Psyr_0360 0.55 -0.7 386,314 + Psyr_0360 0.74 +0.0 386,314 + Psyr_0360 0.74 -0.7 386,315 - Psyr_0360 0.74 -0.4 386,315 - Psyr_0360 0.74 -3.3 386,419 + Psyr_0360 0.85 +1.6 386,419 + Psyr_0360 0.85 -0.4 386,419 + Psyr_0360 0.85 +1.6 386,420 - Psyr_0360 0.85 -0.5 386,420 - Psyr_0360 0.85 +0.6 386,420 - Psyr_0360 0.85 -0.3 386,420 - Psyr_0360 0.85 +1.1 386,420 - Psyr_0360 0.85 -0.9 386,420 - Psyr_0360 0.85 +0.2 386,420 - Psyr_0360 0.85 -0.2 386,563 + +0.9 386,563 + +0.4 386,564 - +1.6 386,564 - +1.8 386,564 - +0.9 386,564 - +1.7 386,829 + Psyr_0361 0.35 +0.1 386,836 + Psyr_0361 0.36 +0.9 386,836 + Psyr_0361 0.36 +0.9 386,836 + Psyr_0361 0.36 +0.9 386,836 + Psyr_0361 0.36 -2.3 386,837 - Psyr_0361 0.37 +1.7 386,837 - Psyr_0361 0.37 +1.4 386,837 - Psyr_0361 0.37 -0.4 386,837 - Psyr_0361 0.37 -2.5 386,850 + Psyr_0361 0.38 -1.3 386,910 - Psyr_0361 0.47 +0.3 386,910 - Psyr_0361 0.47 +3.2 387,069 + Psyr_0361 0.69 -0.3 387,199 + Psyr_0361 0.88 -1.4 387,199 + Psyr_0361 0.88 -0.3 387,200 - Psyr_0361 0.88 +1.0 387,200 - Psyr_0361 0.88 +1.1 387,200 - Psyr_0361 0.88 -0.5 387,200 - Psyr_0361 0.88 +3.1 387,200 - Psyr_0361 0.88 +0.8 387,235 + -1.2 387,235 + +0.2 387,235 + +1.0 387,235 + +1.2 387,235 + +2.6 387,235 + +0.7 387,236 - +0.0 387,236 - +0.3 387,236 - -1.0 387,236 - -2.2 387,236 - -0.8 387,236 - -0.2 387,236 - +0.7 387,239 + -0.1 387,239 + +1.2 387,239 + +0.2 387,239 + -1.0 387,239 + +0.2 387,240 - +0.2 387,240 - +1.2 387,240 - +0.2 387,272 - +1.1 387,272 - +3.0 387,272 - +0.2 387,390 + Psyr_0362 0.19 -0.5 387,390 + Psyr_0362 0.19 -0.1 387,390 + Psyr_0362 0.19 +1.7 387,391 - Psyr_0362 0.19 +0.1 387,391 - Psyr_0362 0.19 +2.2 387,391 - Psyr_0362 0.19 +0.2 387,391 - Psyr_0362 0.19 -0.8 387,391 - Psyr_0362 0.19 -0.1 387,394 + Psyr_0362 0.20 +0.3 387,394 + Psyr_0362 0.20 +0.7 387,394 + Psyr_0362 0.20 -0.5 387,395 - Psyr_0362 0.20 -0.4 387,395 - Psyr_0362 0.20 -1.3 387,395 - Psyr_0362 0.20 +1.0 387,395 - Psyr_0362 0.20 +1.0 387,395 - Psyr_0362 0.20 -0.9 387,395 - Psyr_0362 0.20 +0.6 387,407 + Psyr_0362 0.22 -1.0 387,407 + Psyr_0362 0.22 -1.0 387,407 + Psyr_0362 0.22 +2.4 387,407 + Psyr_0362 0.22 -0.4 387,408 - Psyr_0362 0.22 -0.5
Or see this region's nucleotide sequence