Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0359

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0358 and Psyr_0359 are separated by 219 nucleotidesPsyr_0359 and Psyr_0360 are separated by 197 nucleotides Psyr_0358: Psyr_0358 - Diaminopimelate-binding protein / L-cystine-binding protein, at 383,399 to 384,196 _0358 Psyr_0359: Psyr_0359 - D-cysteine desulfhydrase, at 384,416 to 385,414 _0359 Psyr_0360: Psyr_0360 - serine O-acetyltransferase, at 385,612 to 386,565 _0360 Position (kb) 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 383.512 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.830 kb on - strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 383.848 kb on - strand, within Psyr_0358at 384.048 kb on + strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.172 kb on + strandat 384.173 kb on - strandat 384.173 kb on - strandat 384.287 kb on + strandat 384.287 kb on + strandat 384.287 kb on + strandat 384.288 kb on - strandat 384.298 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.336 kb on - strandat 384.409 kb on + strandat 384.546 kb on + strand, within Psyr_0359at 384.546 kb on + strand, within Psyr_0359at 384.547 kb on - strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.640 kb on - strand, within Psyr_0359at 384.640 kb on - strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.910 kb on - strand, within Psyr_0359at 384.910 kb on - strand, within Psyr_0359at 384.955 kb on - strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.245 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.312 kb on + strand, within Psyr_0359at 385.312 kb on + strand, within Psyr_0359at 385.312 kb on + strand, within Psyr_0359at 385.434 kb on - strandat 385.434 kb on - strandat 385.450 kb on - strandat 385.451 kb on + strandat 385.451 kb on + strandat 385.451 kb on + strandat 385.452 kb on - strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.504 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.560 kb on - strandat 385.619 kb on - strandat 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.924 kb on + strand, within Psyr_0360at 386.050 kb on + strand, within Psyr_0360at 386.050 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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383,512 + Psyr_0358 0.14 -1.0
383,636 + Psyr_0358 0.30 +0.4
383,636 + Psyr_0358 0.30 +0.7
383,636 + Psyr_0358 0.30 +1.5
383,636 + Psyr_0358 0.30 +0.4
383,636 + Psyr_0358 0.30 +0.2
383,637 - Psyr_0358 0.30 -0.1
383,637 - Psyr_0358 0.30 -0.9
383,637 - Psyr_0358 0.30 +0.1
383,637 - Psyr_0358 0.30 +1.0
383,674 - Psyr_0358 0.34 +0.7
383,674 - Psyr_0358 0.34 +0.8
383,674 - Psyr_0358 0.34 -0.8
383,674 - Psyr_0358 0.34 +0.9
383,721 + Psyr_0358 0.40 +0.5
383,721 + Psyr_0358 0.40 +0.4
383,721 + Psyr_0358 0.40 +0.6
383,722 - Psyr_0358 0.40 +1.3
383,722 - Psyr_0358 0.40 -0.3
383,830 - Psyr_0358 0.54 -1.9
383,847 + Psyr_0358 0.56 +0.3
383,847 + Psyr_0358 0.56 -0.6
383,847 + Psyr_0358 0.56 -2.2
383,847 + Psyr_0358 0.56 -0.0
383,847 + Psyr_0358 0.56 -0.7
383,848 - Psyr_0358 0.56 +0.6
383,848 - Psyr_0358 0.56 +0.4
383,848 - Psyr_0358 0.56 +1.0
383,848 - Psyr_0358 0.56 +2.1
384,048 + Psyr_0358 0.81 -0.2
384,049 - Psyr_0358 0.81 +0.1
384,049 - Psyr_0358 0.81 -0.5
384,172 + -0.0
384,173 - +0.8
384,173 - -0.2
384,287 + +2.2
384,287 + -0.1
384,287 + -1.1
384,288 - +1.0
384,298 + +0.9
384,331 + +1.0
384,331 + -0.2
384,331 + +1.3
384,331 + +1.5
384,331 + -0.1
384,331 + +0.3
384,331 + -2.2
384,331 + +0.8
384,333 + -0.1
384,333 + -0.5
384,333 + +1.0
384,333 + +0.7
384,333 + +1.4
384,335 + +0.6
384,335 + -0.4
384,335 + -1.8
384,335 + -1.1
384,335 + +0.5
384,336 - -2.0
384,409 + -0.1
384,546 + Psyr_0359 0.13 +0.4
384,546 + Psyr_0359 0.13 -2.3
384,547 - Psyr_0359 0.13 +2.2
384,639 + Psyr_0359 0.22 +0.6
384,639 + Psyr_0359 0.22 +1.0
384,640 - Psyr_0359 0.22 +2.6
384,640 - Psyr_0359 0.22 -1.3
384,909 + Psyr_0359 0.49 -0.4
384,909 + Psyr_0359 0.49 +0.9
384,909 + Psyr_0359 0.49 +0.3
384,910 - Psyr_0359 0.49 -2.5
384,910 - Psyr_0359 0.49 -1.0
384,955 - Psyr_0359 0.54 +0.3
385,037 + Psyr_0359 0.62 +0.6
385,038 - Psyr_0359 0.62 -2.2
385,038 - Psyr_0359 0.62 -1.2
385,038 - Psyr_0359 0.62 -0.6
385,245 + Psyr_0359 0.83 -0.6
385,308 + Psyr_0359 0.89 +0.6
385,308 + Psyr_0359 0.89 -0.1
385,308 + Psyr_0359 0.89 -0.5
385,308 + Psyr_0359 0.89 -1.3
385,308 + Psyr_0359 0.89 -1.0
385,308 + Psyr_0359 0.89 -0.9
385,308 + Psyr_0359 0.89 +0.3
385,308 + Psyr_0359 0.89 +0.5
385,308 + Psyr_0359 0.89 +0.5
385,308 + Psyr_0359 0.89 +1.2
385,308 + Psyr_0359 0.89 -0.6
385,308 + Psyr_0359 0.89 -0.4
385,308 + Psyr_0359 0.89 -0.5
385,308 + Psyr_0359 0.89 +0.9
385,308 + Psyr_0359 0.89 +0.2
385,308 + Psyr_0359 0.89 +0.4
385,308 + Psyr_0359 0.89 +1.4
385,308 + Psyr_0359 0.89 -0.9
385,308 + Psyr_0359 0.89 -1.6
385,309 - Psyr_0359 0.89 +0.8
385,309 - Psyr_0359 0.89 -0.1
385,309 - Psyr_0359 0.89 +1.1
385,309 - Psyr_0359 0.89 -1.0
385,309 - Psyr_0359 0.89 +1.7
385,309 - Psyr_0359 0.89 -0.5
385,309 - Psyr_0359 0.89 +0.2
385,309 - Psyr_0359 0.89 -1.2
385,309 - Psyr_0359 0.89 -0.3
385,309 - Psyr_0359 0.89 -0.4
385,309 - Psyr_0359 0.89 -1.1
385,312 + Psyr_0359 0.90 -0.8
385,312 + Psyr_0359 0.90 +0.2
385,312 + Psyr_0359 0.90 +0.6
385,434 - -1.3
385,434 - +1.6
385,450 - -0.0
385,451 + -1.6
385,451 + -0.1
385,451 + -0.3
385,452 - +0.4
385,478 + -0.7
385,478 + -0.2
385,478 + -0.8
385,478 + -1.3
385,478 + -0.2
385,478 + +0.2
385,478 + +0.4
385,478 + -2.2
385,478 + +0.1
385,479 - +1.3
385,479 - -1.3
385,479 - -1.3
385,479 - +0.3
385,479 - -1.0
385,479 - +0.1
385,479 - -0.1
385,479 - +0.3
385,504 + +1.2
385,559 + -0.2
385,559 + -1.8
385,559 + +0.6
385,559 + -0.0
385,559 + +0.3
385,559 + +1.1
385,559 + -0.0
385,560 - +0.4
385,619 - -1.3
385,858 + Psyr_0360 0.26 +0.4
385,858 + Psyr_0360 0.26 -0.1
385,858 + Psyr_0360 0.26 +1.1
385,858 + Psyr_0360 0.26 +0.0
385,858 + Psyr_0360 0.26 +1.0
385,858 + Psyr_0360 0.26 +0.2
385,858 + Psyr_0360 0.26 -0.4
385,858 + Psyr_0360 0.26 -1.1
385,858 + Psyr_0360 0.26 +1.1
385,858 + Psyr_0360 0.26 +0.2
385,858 + Psyr_0360 0.26 -0.3
385,858 + Psyr_0360 0.26 -0.5
385,858 + Psyr_0360 0.26 -1.8
385,858 + Psyr_0360 0.26 -0.6
385,859 - Psyr_0360 0.26 -0.0
385,859 - Psyr_0360 0.26 +1.0
385,859 - Psyr_0360 0.26 +0.1
385,859 - Psyr_0360 0.26 -0.9
385,859 - Psyr_0360 0.26 -0.9
385,859 - Psyr_0360 0.26 -0.7
385,859 - Psyr_0360 0.26 -0.6
385,859 - Psyr_0360 0.26 -1.3
385,859 - Psyr_0360 0.26 -2.0
385,924 + Psyr_0360 0.33 +0.1
386,050 + Psyr_0360 0.46 -0.5
386,050 + Psyr_0360 0.46 +1.1
386,140 + Psyr_0360 0.55 +0.5
386,140 + Psyr_0360 0.55 -1.8
386,140 + Psyr_0360 0.55 -1.3
386,140 + Psyr_0360 0.55 +0.6
386,140 + Psyr_0360 0.55 -3.1
386,140 + Psyr_0360 0.55 +0.8
386,140 + Psyr_0360 0.55 -2.1
386,141 - Psyr_0360 0.55 -0.7
386,141 - Psyr_0360 0.55 -0.7
386,314 + Psyr_0360 0.74 +0.0
386,314 + Psyr_0360 0.74 -0.7
386,315 - Psyr_0360 0.74 -0.4
386,315 - Psyr_0360 0.74 -3.3

Or see this region's nucleotide sequence