Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0308

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0307 and Psyr_0308 are separated by 288 nucleotidesPsyr_0308 and Psyr_0309 are separated by 47 nucleotidesPsyr_0309 and Psyr_0310 overlap by 11 nucleotides Psyr_0307: Psyr_0307 - hypothetical protein, at 327,895 to 328,398 _0307 Psyr_0308: Psyr_0308 - hypothetical protein, at 328,687 to 329,424 _0308 Psyr_0309: Psyr_0309 - Colicin immunity protein/pyocin immunity protein, at 329,472 to 329,744 _0309 Psyr_0310: Psyr_0310 - HNH endonuclease:S-type Pyocin, at 329,734 to 331,704 _0310 Position (kb) 328 329 330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 327.779 kb on + strandat 327.779 kb on + strandat 327.806 kb on + strandat 327.806 kb on + strandat 327.807 kb on - strandat 327.813 kb on + strandat 327.813 kb on + strandat 327.814 kb on - strandat 327.837 kb on - strandat 327.837 kb on - strandat 327.842 kb on - strandat 327.931 kb on - strandat 327.996 kb on - strand, within Psyr_0307at 328.012 kb on - strand, within Psyr_0307at 328.029 kb on - strand, within Psyr_0307at 328.044 kb on + strand, within Psyr_0307at 328.047 kb on + strand, within Psyr_0307at 328.047 kb on + strand, within Psyr_0307at 328.117 kb on + strand, within Psyr_0307at 328.121 kb on + strand, within Psyr_0307at 328.178 kb on - strand, within Psyr_0307at 328.214 kb on + strand, within Psyr_0307at 328.214 kb on + strandat 328.214 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.257 kb on + strand, within Psyr_0307at 328.258 kb on - strand, within Psyr_0307at 328.258 kb on - strand, within Psyr_0307at 328.294 kb on + strand, within Psyr_0307at 328.295 kb on - strand, within Psyr_0307at 328.321 kb on - strand, within Psyr_0307at 328.362 kb on + strandat 328.363 kb on - strandat 328.363 kb on - strandat 328.392 kb on + strandat 328.411 kb on - strandat 328.424 kb on + strandat 328.439 kb on + strandat 328.439 kb on + strandat 328.440 kb on - strandat 328.440 kb on - strandat 328.440 kb on - strandat 328.443 kb on + strandat 328.443 kb on + strandat 328.444 kb on - strandat 328.444 kb on - strandat 328.467 kb on - strandat 328.472 kb on - strandat 328.510 kb on - strandat 328.531 kb on - strandat 328.575 kb on - strandat 328.575 kb on - strandat 328.575 kb on - strandat 328.575 kb on - strandat 328.583 kb on + strandat 328.583 kb on + strandat 328.584 kb on - strandat 328.613 kb on + strandat 328.614 kb on - strandat 328.704 kb on + strandat 328.704 kb on + strandat 328.705 kb on - strandat 328.966 kb on + strand, within Psyr_0308at 328.966 kb on + strand, within Psyr_0308at 328.966 kb on + strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 328.967 kb on - strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.098 kb on + strand, within Psyr_0308at 329.099 kb on - strand, within Psyr_0308at 329.101 kb on + strand, within Psyr_0308at 329.101 kb on + strand, within Psyr_0308at 329.113 kb on + strand, within Psyr_0308at 329.113 kb on + strand, within Psyr_0308at 329.113 kb on + strand, within Psyr_0308at 329.114 kb on - strand, within Psyr_0308at 329.114 kb on - strand, within Psyr_0308at 329.114 kb on - strand, within Psyr_0308at 329.114 kb on - strand, within Psyr_0308at 329.114 kb on - strand, within Psyr_0308at 329.168 kb on + strand, within Psyr_0308at 329.168 kb on + strand, within Psyr_0308at 329.168 kb on + strand, within Psyr_0308at 329.169 kb on - strand, within Psyr_0308at 329.169 kb on - strand, within Psyr_0308at 329.221 kb on + strand, within Psyr_0308at 329.221 kb on + strand, within Psyr_0308at 329.221 kb on + strand, within Psyr_0308at 329.221 kb on + strand, within Psyr_0308at 329.222 kb on - strand, within Psyr_0308at 329.238 kb on + strand, within Psyr_0308at 329.254 kb on - strand, within Psyr_0308at 329.254 kb on - strand, within Psyr_0308at 329.256 kb on - strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.308 kb on + strand, within Psyr_0308at 329.309 kb on - strand, within Psyr_0308at 329.309 kb on - strand, within Psyr_0308at 329.330 kb on - strand, within Psyr_0308at 329.330 kb on - strand, within Psyr_0308at 329.333 kb on + strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.334 kb on - strand, within Psyr_0308at 329.361 kb on - strandat 329.381 kb on - strandat 329.381 kb on - strandat 329.381 kb on - strandat 329.392 kb on + strandat 329.413 kb on + strandat 329.414 kb on - strandat 329.414 kb on - strandat 329.571 kb on + strand, within Psyr_0309at 329.717 kb on - strandat 329.769 kb on + strandat 329.770 kb on - strandat 329.770 kb on - strandat 329.811 kb on - strandat 329.917 kb on + strandat 329.918 kb on - strandat 329.929 kb on - strandat 330.158 kb on + strand, within Psyr_0310at 330.158 kb on + strand, within Psyr_0310at 330.158 kb on + strand, within Psyr_0310at 330.159 kb on - strand, within Psyr_0310at 330.159 kb on - strand, within Psyr_0310at 330.159 kb on - strand, within Psyr_0310at 330.159 kb on - strand, within Psyr_0310at 330.159 kb on - strand, within Psyr_0310at 330.162 kb on + strand, within Psyr_0310at 330.163 kb on - strand, within Psyr_0310at 330.163 kb on - strand, within Psyr_0310at 330.163 kb on - strand, within Psyr_0310at 330.200 kb on + strand, within Psyr_0310at 330.200 kb on + strand, within Psyr_0310at 330.200 kb on + strand, within Psyr_0310at 330.201 kb on - strand, within Psyr_0310at 330.201 kb on - strand, within Psyr_0310at 330.201 kb on - strand, within Psyr_0310at 330.201 kb on - strand, within Psyr_0310at 330.233 kb on + strand, within Psyr_0310at 330.234 kb on - strand, within Psyr_0310at 330.250 kb on + strand, within Psyr_0310at 330.280 kb on + strand, within Psyr_0310at 330.281 kb on - strand, within Psyr_0310at 330.337 kb on + strand, within Psyr_0310at 330.338 kb on - strand, within Psyr_0310at 330.390 kb on - strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.410 kb on + strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310at 330.411 kb on - strand, within Psyr_0310

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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327,779 + -1.6
327,779 + +0.1
327,806 + -0.2
327,806 + +0.9
327,807 - +0.7
327,813 + -0.5
327,813 + +1.1
327,814 - -2.8
327,837 - -0.4
327,837 - +1.1
327,842 - +1.1
327,931 - -0.6
327,996 - Psyr_0307 0.20 +1.8
328,012 - Psyr_0307 0.23 +0.8
328,029 - Psyr_0307 0.27 -1.0
328,044 + Psyr_0307 0.30 +0.8
328,047 + Psyr_0307 0.30 +0.4
328,047 + Psyr_0307 0.30 +0.7
328,117 + Psyr_0307 0.44 -4.0
328,121 + Psyr_0307 0.45 -2.1
328,178 - Psyr_0307 0.56 -0.6
328,214 + Psyr_0307 0.63 -1.5
328,214 + -0.6
328,214 + Psyr_0307 0.63 -1.0
328,257 + Psyr_0307 0.72 +0.6
328,257 + Psyr_0307 0.72 +1.3
328,257 + Psyr_0307 0.72 +0.2
328,258 - Psyr_0307 0.72 +1.8
328,258 - Psyr_0307 0.72 +1.5
328,294 + Psyr_0307 0.79 +1.6
328,295 - Psyr_0307 0.79 -1.5
328,321 - Psyr_0307 0.85 -0.6
328,362 + +0.1
328,363 - -0.3
328,363 - +0.9
328,392 + +0.7
328,411 - +1.0
328,424 + +0.5
328,439 + -1.4
328,439 + -1.0
328,440 - +1.8
328,440 - -1.8
328,440 - -1.1
328,443 + -0.2
328,443 + +0.2
328,444 - +1.6
328,444 - -0.4
328,467 - +0.9
328,472 - -1.3
328,510 - +1.0
328,531 - -3.0
328,575 - -0.1
328,575 - +2.1
328,575 - +0.4
328,575 - -0.1
328,583 + +1.8
328,583 + +1.6
328,584 - -0.1
328,613 + -1.0
328,614 - +0.4
328,704 + -0.4
328,704 + +1.4
328,705 - +0.2
328,966 + Psyr_0308 0.38 +0.6
328,966 + Psyr_0308 0.38 -0.3
328,966 + Psyr_0308 0.38 -0.1
328,967 - Psyr_0308 0.38 -0.1
328,967 - Psyr_0308 0.38 -0.4
328,967 - Psyr_0308 0.38 -2.4
328,967 - Psyr_0308 0.38 +0.6
328,967 - Psyr_0308 0.38 +1.7
328,967 - Psyr_0308 0.38 -1.3
328,967 - Psyr_0308 0.38 -1.8
329,098 + Psyr_0308 0.56 -0.2
329,098 + Psyr_0308 0.56 +0.4
329,098 + Psyr_0308 0.56 -2.8
329,098 + Psyr_0308 0.56 +1.4
329,098 + Psyr_0308 0.56 -0.8
329,099 - Psyr_0308 0.56 -0.3
329,101 + Psyr_0308 0.56 +0.5
329,101 + Psyr_0308 0.56 +0.4
329,113 + Psyr_0308 0.58 -0.6
329,113 + Psyr_0308 0.58 -0.6
329,113 + Psyr_0308 0.58 +0.0
329,114 - Psyr_0308 0.58 -0.2
329,114 - Psyr_0308 0.58 +0.5
329,114 - Psyr_0308 0.58 +1.2
329,114 - Psyr_0308 0.58 +0.7
329,114 - Psyr_0308 0.58 -0.7
329,168 + Psyr_0308 0.65 +0.2
329,168 + Psyr_0308 0.65 -0.5
329,168 + Psyr_0308 0.65 +0.6
329,169 - Psyr_0308 0.65 -2.6
329,169 - Psyr_0308 0.65 -0.6
329,221 + Psyr_0308 0.72 -0.1
329,221 + Psyr_0308 0.72 +1.0
329,221 + Psyr_0308 0.72 +0.7
329,221 + Psyr_0308 0.72 +1.1
329,222 - Psyr_0308 0.72 +0.5
329,238 + Psyr_0308 0.75 +0.0
329,254 - Psyr_0308 0.77 +0.4
329,254 - Psyr_0308 0.77 +0.6
329,256 - Psyr_0308 0.77 +1.6
329,308 + Psyr_0308 0.84 +1.7
329,308 + Psyr_0308 0.84 +1.0
329,308 + Psyr_0308 0.84 +1.7
329,308 + Psyr_0308 0.84 +0.4
329,309 - Psyr_0308 0.84 -0.6
329,309 - Psyr_0308 0.84 -0.0
329,330 - Psyr_0308 0.87 -0.8
329,330 - Psyr_0308 0.87 -0.6
329,333 + Psyr_0308 0.88 -0.6
329,334 - Psyr_0308 0.88 +2.5
329,334 - Psyr_0308 0.88 -2.6
329,334 - Psyr_0308 0.88 -0.3
329,334 - Psyr_0308 0.88 +0.4
329,334 - Psyr_0308 0.88 +0.5
329,361 - -0.2
329,381 - +1.0
329,381 - -2.7
329,381 - -1.1
329,392 + -0.8
329,413 + -2.6
329,414 - +0.4
329,414 - -0.9
329,571 + Psyr_0309 0.36 -0.1
329,717 - -3.1
329,769 + -0.2
329,770 - -1.0
329,770 - -0.5
329,811 - +1.2
329,917 + -0.1
329,918 - -1.4
329,929 - +0.5
330,158 + Psyr_0310 0.22 -0.9
330,158 + Psyr_0310 0.22 +0.9
330,158 + Psyr_0310 0.22 +0.1
330,159 - Psyr_0310 0.22 +0.0
330,159 - Psyr_0310 0.22 +0.6
330,159 - Psyr_0310 0.22 +0.9
330,159 - Psyr_0310 0.22 +0.5
330,159 - Psyr_0310 0.22 +0.5
330,162 + Psyr_0310 0.22 +3.3
330,163 - Psyr_0310 0.22 -2.0
330,163 - Psyr_0310 0.22 -3.1
330,163 - Psyr_0310 0.22 +1.1
330,200 + Psyr_0310 0.24 -0.4
330,200 + Psyr_0310 0.24 +0.0
330,200 + Psyr_0310 0.24 -0.4
330,201 - Psyr_0310 0.24 +2.0
330,201 - Psyr_0310 0.24 -0.2
330,201 - Psyr_0310 0.24 -0.6
330,201 - Psyr_0310 0.24 -0.6
330,233 + Psyr_0310 0.25 -1.0
330,234 - Psyr_0310 0.25 -0.7
330,250 + Psyr_0310 0.26 +0.5
330,280 + Psyr_0310 0.28 -0.6
330,281 - Psyr_0310 0.28 +0.7
330,337 + Psyr_0310 0.31 +0.4
330,338 - Psyr_0310 0.31 +1.1
330,390 - Psyr_0310 0.33 -0.3
330,410 + Psyr_0310 0.34 +0.7
330,410 + Psyr_0310 0.34 -0.4
330,410 + Psyr_0310 0.34 -1.3
330,410 + Psyr_0310 0.34 +1.4
330,410 + Psyr_0310 0.34 +0.2
330,410 + Psyr_0310 0.34 -0.7
330,410 + Psyr_0310 0.34 +0.1
330,410 + Psyr_0310 0.34 +0.8
330,411 - Psyr_0310 0.34 -0.7
330,411 - Psyr_0310 0.34 -0.8
330,411 - Psyr_0310 0.34 -0.6
330,411 - Psyr_0310 0.34 -0.1
330,411 - Psyr_0310 0.34 +0.6
330,411 - Psyr_0310 0.34 -0.0
330,411 - Psyr_0310 0.34 -1.6
330,411 - Psyr_0310 0.34 +1.0
330,411 - Psyr_0310 0.34 +0.4
330,411 - Psyr_0310 0.34 -2.3

Or see this region's nucleotide sequence