Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0229

Experiment: KB with Ferulic Acid 180 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0228 and Psyr_0229 overlap by 4 nucleotidesPsyr_0229 and Psyr_0230 are separated by 72 nucleotides Psyr_0228: Psyr_0228 - Major facilitator superfamily, at 242,037 to 243,185 _0228 Psyr_0229: Psyr_0229 - Phospholipase D/Transphosphatidylase, at 243,182 to 244,762 _0229 Psyr_0230: Psyr_0230 - transcriptional regulator, GntR family, at 244,835 to 246,256 _0230 Position (kb) 243 244 245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 242.307 kb on + strand, within Psyr_0228at 242.310 kb on + strand, within Psyr_0228at 242.433 kb on + strand, within Psyr_0228at 242.445 kb on + strand, within Psyr_0228at 242.445 kb on + strand, within Psyr_0228at 242.446 kb on - strand, within Psyr_0228at 242.446 kb on - strand, within Psyr_0228at 242.446 kb on - strand, within Psyr_0228at 242.446 kb on - strand, within Psyr_0228at 242.703 kb on + strand, within Psyr_0228at 242.704 kb on - strand, within Psyr_0228at 242.711 kb on - strand, within Psyr_0228at 242.711 kb on - strand, within Psyr_0228at 243.184 kb on - strandat 243.257 kb on - strandat 243.257 kb on - strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.327 kb on + strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.328 kb on - strandat 243.633 kb on + strand, within Psyr_0229at 243.732 kb on + strand, within Psyr_0229at 243.732 kb on + strand, within Psyr_0229at 243.732 kb on + strand, within Psyr_0229at 243.732 kb on + strand, within Psyr_0229at 243.733 kb on - strand, within Psyr_0229at 243.733 kb on - strand, within Psyr_0229at 243.733 kb on - strand, within Psyr_0229at 243.762 kb on + strand, within Psyr_0229at 243.762 kb on + strand, within Psyr_0229at 243.762 kb on + strand, within Psyr_0229at 243.763 kb on - strand, within Psyr_0229at 243.763 kb on - strand, within Psyr_0229at 243.763 kb on - strand, within Psyr_0229at 243.860 kb on + strand, within Psyr_0229at 243.861 kb on - strand, within Psyr_0229at 243.861 kb on - strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.894 kb on + strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.895 kb on - strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.945 kb on + strand, within Psyr_0229at 243.946 kb on - strand, within Psyr_0229at 243.963 kb on + strand, within Psyr_0229at 243.963 kb on + strand, within Psyr_0229at 243.963 kb on + strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 243.964 kb on - strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.053 kb on + strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.054 kb on - strand, within Psyr_0229at 244.096 kb on - strand, within Psyr_0229at 244.188 kb on + strand, within Psyr_0229at 244.188 kb on + strand, within Psyr_0229at 244.189 kb on - strand, within Psyr_0229at 244.189 kb on - strand, within Psyr_0229at 244.189 kb on - strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.506 kb on + strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.507 kb on - strand, within Psyr_0229at 244.509 kb on + strand, within Psyr_0229at 244.509 kb on + strand, within Psyr_0229at 244.509 kb on + strand, within Psyr_0229at 244.510 kb on - strand, within Psyr_0229at 244.510 kb on - strand, within Psyr_0229at 244.756 kb on + strandat 244.756 kb on + strandat 244.801 kb on + strandat 244.802 kb on - strandat 244.945 kb on - strandat 244.966 kb on + strandat 244.967 kb on - strandat 245.100 kb on + strand, within Psyr_0230at 245.101 kb on - strand, within Psyr_0230at 245.101 kb on - strand, within Psyr_0230at 245.175 kb on + strand, within Psyr_0230at 245.175 kb on + strand, within Psyr_0230at 245.175 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.244 kb on + strand, within Psyr_0230at 245.245 kb on - strand, within Psyr_0230at 245.245 kb on - strand, within Psyr_0230at 245.245 kb on - strand, within Psyr_0230at 245.388 kb on + strand, within Psyr_0230at 245.388 kb on + strand, within Psyr_0230at 245.394 kb on + strand, within Psyr_0230at 245.394 kb on + strand, within Psyr_0230at 245.394 kb on + strand, within Psyr_0230at 245.395 kb on - strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.409 kb on + strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.410 kb on - strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.490 kb on + strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230at 245.491 kb on - strand, within Psyr_0230

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml
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242,307 + Psyr_0228 0.23 -0.3
242,310 + Psyr_0228 0.24 +0.2
242,433 + Psyr_0228 0.34 -0.0
242,445 + Psyr_0228 0.36 -1.4
242,445 + Psyr_0228 0.36 -1.6
242,446 - Psyr_0228 0.36 +0.3
242,446 - Psyr_0228 0.36 +0.7
242,446 - Psyr_0228 0.36 -1.8
242,446 - Psyr_0228 0.36 +0.4
242,703 + Psyr_0228 0.58 -0.6
242,704 - Psyr_0228 0.58 +1.4
242,711 - Psyr_0228 0.59 -1.8
242,711 - Psyr_0228 0.59 -3.3
243,184 - +1.6
243,257 - -0.1
243,257 - -0.4
243,327 + +1.7
243,327 + +1.7
243,327 + +0.9
243,327 + -0.4
243,327 + -0.7
243,327 + -0.1
243,327 + -0.2
243,327 + +3.0
243,327 + +0.2
243,327 + -0.3
243,328 - +0.0
243,328 - -0.7
243,328 - -1.7
243,328 - +1.0
243,328 - -1.6
243,328 - +3.6
243,633 + Psyr_0229 0.29 +0.6
243,732 + Psyr_0229 0.35 +0.3
243,732 + Psyr_0229 0.35 -1.1
243,732 + Psyr_0229 0.35 +0.1
243,732 + Psyr_0229 0.35 +0.8
243,733 - Psyr_0229 0.35 -0.9
243,733 - Psyr_0229 0.35 +1.4
243,733 - Psyr_0229 0.35 -0.1
243,762 + Psyr_0229 0.37 +1.9
243,762 + Psyr_0229 0.37 +0.5
243,762 + Psyr_0229 0.37 -0.4
243,763 - Psyr_0229 0.37 +0.8
243,763 - Psyr_0229 0.37 -0.7
243,763 - Psyr_0229 0.37 -1.4
243,860 + Psyr_0229 0.43 -0.1
243,861 - Psyr_0229 0.43 -0.7
243,861 - Psyr_0229 0.43 +0.2
243,894 + Psyr_0229 0.45 +0.5
243,894 + Psyr_0229 0.45 -0.1
243,894 + Psyr_0229 0.45 -0.6
243,894 + Psyr_0229 0.45 +1.7
243,895 - Psyr_0229 0.45 -0.4
243,895 - Psyr_0229 0.45 -0.2
243,895 - Psyr_0229 0.45 +0.8
243,895 - Psyr_0229 0.45 +0.9
243,895 - Psyr_0229 0.45 +0.4
243,945 + Psyr_0229 0.48 -0.0
243,945 + Psyr_0229 0.48 +0.9
243,945 + Psyr_0229 0.48 -2.4
243,945 + Psyr_0229 0.48 -0.1
243,946 - Psyr_0229 0.48 -0.9
243,963 + Psyr_0229 0.49 -2.4
243,963 + Psyr_0229 0.49 +0.2
243,963 + Psyr_0229 0.49 +0.1
243,964 - Psyr_0229 0.49 +0.5
243,964 - Psyr_0229 0.49 +0.4
243,964 - Psyr_0229 0.49 +1.8
243,964 - Psyr_0229 0.49 +0.1
244,053 + Psyr_0229 0.55 +1.0
244,053 + Psyr_0229 0.55 +1.4
244,053 + Psyr_0229 0.55 +1.4
244,053 + Psyr_0229 0.55 -1.2
244,054 - Psyr_0229 0.55 +0.5
244,054 - Psyr_0229 0.55 +2.2
244,054 - Psyr_0229 0.55 -0.8
244,054 - Psyr_0229 0.55 -1.8
244,054 - Psyr_0229 0.55 +0.5
244,054 - Psyr_0229 0.55 -0.6
244,096 - Psyr_0229 0.58 -2.4
244,188 + Psyr_0229 0.64 +1.8
244,188 + Psyr_0229 0.64 +2.4
244,189 - Psyr_0229 0.64 +0.3
244,189 - Psyr_0229 0.64 +0.9
244,189 - Psyr_0229 0.64 -0.5
244,506 + Psyr_0229 0.84 -0.5
244,506 + Psyr_0229 0.84 -0.6
244,506 + Psyr_0229 0.84 -0.0
244,506 + Psyr_0229 0.84 +0.2
244,506 + Psyr_0229 0.84 +1.9
244,506 + Psyr_0229 0.84 +1.6
244,506 + Psyr_0229 0.84 +0.7
244,506 + Psyr_0229 0.84 +1.0
244,506 + Psyr_0229 0.84 +0.0
244,506 + Psyr_0229 0.84 -0.9
244,506 + Psyr_0229 0.84 +1.9
244,506 + Psyr_0229 0.84 +0.0
244,506 + Psyr_0229 0.84 -0.4
244,506 + Psyr_0229 0.84 +0.4
244,506 + Psyr_0229 0.84 +0.5
244,506 + Psyr_0229 0.84 +0.6
244,506 + Psyr_0229 0.84 +2.3
244,506 + Psyr_0229 0.84 +2.2
244,506 + Psyr_0229 0.84 +0.3
244,506 + Psyr_0229 0.84 +0.7
244,506 + Psyr_0229 0.84 +0.6
244,506 + Psyr_0229 0.84 +0.8
244,506 + Psyr_0229 0.84 -0.8
244,507 - Psyr_0229 0.84 +1.0
244,507 - Psyr_0229 0.84 -1.6
244,507 - Psyr_0229 0.84 +0.7
244,507 - Psyr_0229 0.84 +0.2
244,507 - Psyr_0229 0.84 -0.3
244,507 - Psyr_0229 0.84 -0.5
244,507 - Psyr_0229 0.84 +0.1
244,507 - Psyr_0229 0.84 -0.4
244,507 - Psyr_0229 0.84 -0.4
244,507 - Psyr_0229 0.84 -0.1
244,507 - Psyr_0229 0.84 -3.8
244,507 - Psyr_0229 0.84 +1.4
244,507 - Psyr_0229 0.84 -0.1
244,507 - Psyr_0229 0.84 +1.4
244,507 - Psyr_0229 0.84 +1.0
244,507 - Psyr_0229 0.84 +2.6
244,507 - Psyr_0229 0.84 +0.8
244,507 - Psyr_0229 0.84 -0.2
244,507 - Psyr_0229 0.84 +0.3
244,507 - Psyr_0229 0.84 -2.0
244,507 - Psyr_0229 0.84 -0.4
244,507 - Psyr_0229 0.84 -1.4
244,507 - Psyr_0229 0.84 +1.0
244,507 - Psyr_0229 0.84 +0.7
244,509 + Psyr_0229 0.84 -0.4
244,509 + Psyr_0229 0.84 -1.3
244,509 + Psyr_0229 0.84 -1.9
244,510 - Psyr_0229 0.84 +0.0
244,510 - Psyr_0229 0.84 +1.8
244,756 + -0.7
244,756 + -0.6
244,801 + +0.3
244,802 - -0.9
244,945 - +1.0
244,966 + -0.0
244,967 - +0.6
245,100 + Psyr_0230 0.19 +0.7
245,101 - Psyr_0230 0.19 +0.2
245,101 - Psyr_0230 0.19 +1.3
245,175 + Psyr_0230 0.24 +1.4
245,175 + Psyr_0230 0.24 -1.0
245,175 + Psyr_0230 0.24 +1.6
245,244 + Psyr_0230 0.29 -2.4
245,244 + Psyr_0230 0.29 +0.7
245,244 + Psyr_0230 0.29 +1.0
245,244 + Psyr_0230 0.29 +2.5
245,244 + Psyr_0230 0.29 +0.3
245,244 + Psyr_0230 0.29 +1.6
245,244 + Psyr_0230 0.29 -0.2
245,244 + Psyr_0230 0.29 -0.6
245,244 + Psyr_0230 0.29 +0.3
245,245 - Psyr_0230 0.29 +0.1
245,245 - Psyr_0230 0.29 +2.0
245,245 - Psyr_0230 0.29 -0.5
245,388 + Psyr_0230 0.39 -1.6
245,388 + Psyr_0230 0.39 -0.1
245,394 + Psyr_0230 0.39 -2.8
245,394 + Psyr_0230 0.39 -0.6
245,394 + Psyr_0230 0.39 +0.3
245,395 - Psyr_0230 0.39 -0.3
245,409 + Psyr_0230 0.40 +1.4
245,409 + Psyr_0230 0.40 +0.5
245,409 + Psyr_0230 0.40 +1.0
245,409 + Psyr_0230 0.40 -1.0
245,409 + Psyr_0230 0.40 -0.3
245,409 + Psyr_0230 0.40 -1.8
245,410 - Psyr_0230 0.40 +0.4
245,410 - Psyr_0230 0.40 +1.1
245,410 - Psyr_0230 0.40 -0.0
245,410 - Psyr_0230 0.40 -3.3
245,410 - Psyr_0230 0.40 +0.8
245,410 - Psyr_0230 0.40 -0.7
245,490 + Psyr_0230 0.46 -0.3
245,490 + Psyr_0230 0.46 -0.2
245,490 + Psyr_0230 0.46 +0.4
245,491 - Psyr_0230 0.46 -0.6
245,491 - Psyr_0230 0.46 +0.3
245,491 - Psyr_0230 0.46 +1.7

Or see this region's nucleotide sequence