Experiment: KB with Ferulic Acid 180 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0056 and Psyr_0057 overlap by 10 nucleotides Psyr_0057 and Psyr_0058 are separated by 4 nucleotides Psyr_0058 and Psyr_0059 are separated by 216 nucleotides Psyr_0059 and Psyr_0060 overlap by 4 nucleotides
Psyr_0056: Psyr_0056 - Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ, at 56,893 to 57,393
_0056
Psyr_0057: Psyr_0057 - conserved hypothetical protein, at 57,384 to 57,536
_0057
Psyr_0058: Psyr_0058 - Disulfide bond formation protein DsbB, at 57,541 to 58,068
_0058
Psyr_0059: Psyr_0059 - HemY, N-terminal:HemY, N-terminal:HemY, N-terminal, at 58,285 to 59,529
_0059
Psyr_0060: Psyr_0060 - Protein of unknown function DUF513, at 59,526 to 60,701
_0060
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.438 kb on + strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.485 kb on + strand, within Psyr_0057 at 57.485 kb on + strand, within Psyr_0057 at 57.512 kb on + strand, within Psyr_0057 at 57.513 kb on - strand, within Psyr_0057 at 57.513 kb on - strand, within Psyr_0057 at 57.523 kb on + strand at 57.523 kb on + strand at 57.523 kb on + strand at 57.532 kb on + strand at 57.532 kb on + strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.624 kb on + strand, within Psyr_0058 at 57.624 kb on + strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.658 kb on - strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.746 kb on - strand, within Psyr_0058 at 57.746 kb on - strand, within Psyr_0058 at 57.976 kb on + strand, within Psyr_0058 at 57.977 kb on - strand, within Psyr_0058 at 57.992 kb on + strand, within Psyr_0058 at 57.992 kb on + strand, within Psyr_0058 at 57.993 kb on - strand, within Psyr_0058 at 57.993 kb on - strand, within Psyr_0058 at 57.993 kb on - strand, within Psyr_0058 at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.064 kb on + strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.065 kb on - strand at 58.099 kb on - strand at 58.194 kb on + strand at 58.194 kb on + strand at 58.194 kb on + strand at 58.194 kb on + strand at 58.195 kb on - strand at 58.195 kb on - strand at 58.195 kb on - strand at 58.206 kb on + strand at 58.206 kb on + strand at 58.206 kb on + strand at 58.206 kb on + strand at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.497 kb on + strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.498 kb on - strand, within Psyr_0059 at 58.601 kb on + strand, within Psyr_0059 at 58.625 kb on + strand, within Psyr_0059 at 58.625 kb on + strand, within Psyr_0059 at 58.625 kb on + strand, within Psyr_0059 at 58.625 kb on + strand, within Psyr_0059 at 58.625 kb on + strand, within Psyr_0059 at 58.700 kb on + strand, within Psyr_0059 at 58.938 kb on - strand, within Psyr_0059 at 58.938 kb on - strand, within Psyr_0059 at 59.165 kb on + strand, within Psyr_0059 at 59.165 kb on + strand, within Psyr_0059 at 59.165 kb on + strand, within Psyr_0059 at 59.165 kb on + strand, within Psyr_0059 at 59.165 kb on + strand, within Psyr_0059 at 59.166 kb on - strand, within Psyr_0059 at 59.166 kb on - strand, within Psyr_0059 at 59.166 kb on - strand, within Psyr_0059 at 59.166 kb on - strand, within Psyr_0059 at 59.166 kb on - strand, within Psyr_0059 at 59.166 kb on - strand, within Psyr_0059 at 59.169 kb on - strand, within Psyr_0059 at 59.169 kb on - strand, within Psyr_0059 at 59.169 kb on - strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.269 kb on + strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.270 kb on - strand, within Psyr_0059 at 59.448 kb on - strand at 59.506 kb on + strand at 59.506 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.516 kb on + strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.517 kb on - strand at 59.587 kb on + strand at 59.588 kb on - strand at 59.887 kb on + strand, within Psyr_0060 at 59.888 kb on - strand, within Psyr_0060 at 59.888 kb on - strand, within Psyr_0060 at 59.888 kb on - strand, within Psyr_0060 at 60.003 kb on + strand, within Psyr_0060 at 60.003 kb on + strand, within Psyr_0060 at 60.003 kb on + strand, within Psyr_0060 at 60.003 kb on + strand, within Psyr_0060 at 60.004 kb on - strand, within Psyr_0060 at 60.004 kb on - strand, within Psyr_0060 at 60.004 kb on - strand, within Psyr_0060 at 60.372 kb on - strand, within Psyr_0060 at 60.372 kb on - strand, within Psyr_0060
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Ferulic Acid 180 ug/ml remove 57,416 - Psyr_0057 0.21 -1.0 57,416 - Psyr_0057 0.21 +0.9 57,416 - Psyr_0057 0.21 +0.6 57,416 - Psyr_0057 0.21 +1.5 57,416 - Psyr_0057 0.21 +0.4 57,438 + Psyr_0057 0.35 +1.0 57,439 - Psyr_0057 0.36 -0.0 57,439 - Psyr_0057 0.36 -0.1 57,439 - Psyr_0057 0.36 -0.9 57,439 - Psyr_0057 0.36 +0.5 57,457 + Psyr_0057 0.48 +0.1 57,457 + Psyr_0057 0.48 +1.2 57,457 + Psyr_0057 0.48 -1.3 57,457 + Psyr_0057 0.48 +2.5 57,457 + Psyr_0057 0.48 +0.6 57,457 + Psyr_0057 0.48 +0.7 57,457 + Psyr_0057 0.48 -0.2 57,457 + Psyr_0057 0.48 -1.0 57,457 + Psyr_0057 0.48 +0.1 57,458 - Psyr_0057 0.48 +1.4 57,458 - Psyr_0057 0.48 -0.4 57,458 - Psyr_0057 0.48 -0.4 57,458 - Psyr_0057 0.48 +0.4 57,485 + Psyr_0057 0.66 +0.1 57,485 + Psyr_0057 0.66 +0.9 57,512 + Psyr_0057 0.84 -2.0 57,513 - Psyr_0057 0.84 +0.0 57,513 - Psyr_0057 0.84 +0.4 57,523 + +0.5 57,523 + +0.3 57,523 + +0.4 57,532 + +3.3 57,532 + +0.6 57,533 - +1.4 57,533 - +0.5 57,533 - -2.3 57,533 - +0.6 57,533 - -0.0 57,533 - -0.1 57,624 + Psyr_0058 0.16 -0.6 57,624 + Psyr_0058 0.16 -1.9 57,625 - Psyr_0058 0.16 +0.3 57,625 - Psyr_0058 0.16 +1.2 57,625 - Psyr_0058 0.16 +0.1 57,625 - Psyr_0058 0.16 -1.8 57,625 - Psyr_0058 0.16 -1.4 57,625 - Psyr_0058 0.16 +2.9 57,625 - Psyr_0058 0.16 +0.8 57,625 - Psyr_0058 0.16 +0.3 57,658 - Psyr_0058 0.22 -0.2 57,723 + Psyr_0058 0.34 -0.9 57,723 + Psyr_0058 0.34 +0.1 57,723 + Psyr_0058 0.34 -2.0 57,724 - Psyr_0058 0.35 -2.7 57,724 - Psyr_0058 0.35 -0.8 57,724 - Psyr_0058 0.35 +0.3 57,746 - Psyr_0058 0.39 -1.5 57,746 - Psyr_0058 0.39 -1.2 57,976 + Psyr_0058 0.82 -1.2 57,977 - Psyr_0058 0.83 -0.3 57,992 + Psyr_0058 0.85 +0.3 57,992 + Psyr_0058 0.85 +1.1 57,993 - Psyr_0058 0.86 +0.3 57,993 - Psyr_0058 0.86 -0.4 57,993 - Psyr_0058 0.86 +0.7 58,064 + +0.1 58,064 + +0.6 58,064 + +2.0 58,064 + -0.2 58,064 + +0.8 58,064 + +0.0 58,064 + -0.5 58,064 + +2.0 58,064 + +0.5 58,064 + +0.7 58,064 + +1.6 58,065 - +0.6 58,065 - +0.3 58,065 - +0.5 58,065 - +0.8 58,065 - +0.6 58,065 - +2.0 58,065 - -1.2 58,065 - +0.7 58,065 - +0.5 58,065 - -0.3 58,065 - +1.3 58,065 - +1.5 58,065 - +0.5 58,065 - -0.5 58,065 - -0.4 58,065 - -1.1 58,065 - +0.3 58,065 - -0.5 58,099 - -1.0 58,194 + +0.4 58,194 + +0.5 58,194 + +1.2 58,194 + +1.0 58,195 - -1.0 58,195 - -1.5 58,195 - -0.8 58,206 + +4.2 58,206 + +1.0 58,206 + +0.2 58,206 + +0.3 58,497 + Psyr_0059 0.17 -1.1 58,497 + Psyr_0059 0.17 -0.1 58,497 + Psyr_0059 0.17 +0.1 58,497 + Psyr_0059 0.17 -0.7 58,497 + Psyr_0059 0.17 -1.3 58,497 + Psyr_0059 0.17 +0.3 58,497 + Psyr_0059 0.17 -0.6 58,497 + Psyr_0059 0.17 -0.7 58,497 + Psyr_0059 0.17 -0.5 58,498 - Psyr_0059 0.17 -1.5 58,498 - Psyr_0059 0.17 +1.6 58,498 - Psyr_0059 0.17 +0.0 58,498 - Psyr_0059 0.17 +1.0 58,498 - Psyr_0059 0.17 +1.9 58,498 - Psyr_0059 0.17 +0.2 58,498 - Psyr_0059 0.17 +0.5 58,498 - Psyr_0059 0.17 +0.6 58,498 - Psyr_0059 0.17 -0.6 58,498 - Psyr_0059 0.17 -2.7 58,498 - Psyr_0059 0.17 -1.9 58,498 - Psyr_0059 0.17 +0.5 58,498 - Psyr_0059 0.17 -1.5 58,601 + Psyr_0059 0.25 -2.0 58,625 + Psyr_0059 0.27 -0.9 58,625 + Psyr_0059 0.27 -0.3 58,625 + Psyr_0059 0.27 +0.2 58,625 + Psyr_0059 0.27 -0.8 58,625 + Psyr_0059 0.27 +1.0 58,700 + Psyr_0059 0.33 +0.1 58,938 - Psyr_0059 0.52 +0.0 58,938 - Psyr_0059 0.52 -0.3 59,165 + Psyr_0059 0.71 -0.9 59,165 + Psyr_0059 0.71 -0.5 59,165 + Psyr_0059 0.71 -3.3 59,165 + Psyr_0059 0.71 +1.9 59,165 + Psyr_0059 0.71 +1.7 59,166 - Psyr_0059 0.71 +2.5 59,166 - Psyr_0059 0.71 -2.3 59,166 - Psyr_0059 0.71 -0.5 59,166 - Psyr_0059 0.71 -1.3 59,166 - Psyr_0059 0.71 +0.4 59,166 - Psyr_0059 0.71 -3.3 59,169 - Psyr_0059 0.71 -0.8 59,169 - Psyr_0059 0.71 +0.8 59,169 - Psyr_0059 0.71 -0.4 59,269 + Psyr_0059 0.79 -1.0 59,269 + Psyr_0059 0.79 -0.8 59,269 + Psyr_0059 0.79 +0.5 59,269 + Psyr_0059 0.79 -3.3 59,269 + Psyr_0059 0.79 -0.1 59,269 + Psyr_0059 0.79 -0.7 59,269 + Psyr_0059 0.79 +2.0 59,269 + Psyr_0059 0.79 +0.7 59,270 - Psyr_0059 0.79 +0.0 59,270 - Psyr_0059 0.79 -0.5 59,270 - Psyr_0059 0.79 +1.0 59,270 - Psyr_0059 0.79 -0.4 59,270 - Psyr_0059 0.79 -1.5 59,270 - Psyr_0059 0.79 -0.2 59,270 - Psyr_0059 0.79 -2.9 59,270 - Psyr_0059 0.79 +1.4 59,270 - Psyr_0059 0.79 +1.0 59,270 - Psyr_0059 0.79 -1.8 59,270 - Psyr_0059 0.79 -1.1 59,448 - +0.1 59,506 + -1.0 59,506 + +0.2 59,516 + +0.7 59,516 + +0.1 59,516 + -1.1 59,516 + -1.0 59,516 + -1.0 59,516 + +1.0 59,516 + +0.2 59,516 + +2.6 59,516 + +0.7 59,516 + +0.0 59,516 + +0.8 59,516 + +0.3 59,516 + +0.5 59,516 + +0.9 59,516 + -0.0 59,517 - -3.1 59,517 - +0.9 59,517 - +1.4 59,517 - -1.1 59,517 - +1.0 59,517 - -0.5 59,517 - -1.3 59,517 - +1.7 59,517 - +0.3 59,517 - -0.9 59,517 - -0.0 59,517 - +1.4 59,517 - +0.9 59,517 - -0.1 59,587 + +0.7 59,588 - +0.8 59,887 + Psyr_0060 0.31 +0.0 59,888 - Psyr_0060 0.31 -1.2 59,888 - Psyr_0060 0.31 +0.4 59,888 - Psyr_0060 0.31 -0.4 60,003 + Psyr_0060 0.41 +0.0 60,003 + Psyr_0060 0.41 +1.0 60,003 + Psyr_0060 0.41 +0.0 60,003 + Psyr_0060 0.41 -2.0 60,004 - Psyr_0060 0.41 -1.5 60,004 - Psyr_0060 0.41 -0.0 60,004 - Psyr_0060 0.41 +0.2 60,372 - Psyr_0060 0.72 -0.3 60,372 - Psyr_0060 0.72 +0.1
Or see this region's nucleotide sequence