Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24660

Experiment: RCH2_defined_glucose with 2,2'-Dipyridyl 200 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24655 and BWI76_RS24660 overlap by 4 nucleotidesBWI76_RS24660 and BWI76_RS24665 are separated by 219 nucleotides BWI76_RS24655: BWI76_RS24655 - autoinducer 2 ABC transporter permease LsrC, at 5,137,995 to 5,139,029 _RS24655 BWI76_RS24660: BWI76_RS24660 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 5,139,026 to 5,140,513 _RS24660 BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704 _RS24665 Position (kb) 5139 5140 5141Strain fitness (log2 ratio) -1 0 1at 5138.211 kb on - strand, within BWI76_RS24655at 5138.512 kb on - strand, within BWI76_RS24655at 5138.512 kb on - strand, within BWI76_RS24655at 5138.593 kb on - strand, within BWI76_RS24655at 5138.593 kb on - strand, within BWI76_RS24655at 5138.634 kb on - strand, within BWI76_RS24655at 5138.662 kb on - strand, within BWI76_RS24655at 5138.771 kb on + strand, within BWI76_RS24655at 5139.264 kb on - strand, within BWI76_RS24660at 5139.284 kb on - strand, within BWI76_RS24660at 5139.517 kb on + strand, within BWI76_RS24660at 5139.583 kb on - strand, within BWI76_RS24660at 5140.343 kb on + strand, within BWI76_RS24660at 5140.415 kb on - strandat 5140.494 kb on + strandat 5140.502 kb on + strandat 5140.506 kb on + strandat 5140.591 kb on - strandat 5140.846 kb on + strand, within BWI76_RS24665at 5140.846 kb on - strand, within BWI76_RS24665at 5141.088 kb on + strand, within BWI76_RS24665at 5141.126 kb on + strand, within BWI76_RS24665at 5141.143 kb on + strand, within BWI76_RS24665at 5141.438 kb on + strand, within BWI76_RS24665

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with 2,2'-Dipyridyl 200 uM
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5,138,211 - BWI76_RS24655 0.21 +0.3
5,138,512 - BWI76_RS24655 0.50 -0.2
5,138,512 - BWI76_RS24655 0.50 -0.1
5,138,593 - BWI76_RS24655 0.58 -0.1
5,138,593 - BWI76_RS24655 0.58 -0.2
5,138,634 - BWI76_RS24655 0.62 -0.7
5,138,662 - BWI76_RS24655 0.64 -0.1
5,138,771 + BWI76_RS24655 0.75 +0.3
5,139,264 - BWI76_RS24660 0.16 +0.5
5,139,284 - BWI76_RS24660 0.17 +0.2
5,139,517 + BWI76_RS24660 0.33 +0.6
5,139,583 - BWI76_RS24660 0.37 +0.2
5,140,343 + BWI76_RS24660 0.89 +0.7
5,140,415 - -0.3
5,140,494 + -0.4
5,140,502 + +0.2
5,140,506 + -0.8
5,140,591 - -0.3
5,140,846 + BWI76_RS24665 0.12 -0.5
5,140,846 - BWI76_RS24665 0.12 -0.1
5,141,088 + BWI76_RS24665 0.37 +0.0
5,141,126 + BWI76_RS24665 0.40 +0.1
5,141,143 + BWI76_RS24665 0.42 -0.3
5,141,438 + BWI76_RS24665 0.73 +0.3

Or see this region's nucleotide sequence