Experiment: RCH2_defined_glucose with 2,2'-Dipyridyl 200 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24655 and BWI76_RS24660 overlap by 4 nucleotides BWI76_RS24660 and BWI76_RS24665 are separated by 219 nucleotides
BWI76_RS24655: BWI76_RS24655 - autoinducer 2 ABC transporter permease LsrC, at 5,137,995 to 5,139,029
_RS24655
BWI76_RS24660: BWI76_RS24660 - autoinducer 2 ABC transporter ATP-binding protein LsrA, at 5,139,026 to 5,140,513
_RS24660
BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704
_RS24665
Position (kb)
5139
5140
5141 Strain fitness (log2 ratio)
-1
0
1 at 5138.211 kb on - strand, within BWI76_RS24655 at 5138.512 kb on - strand, within BWI76_RS24655 at 5138.512 kb on - strand, within BWI76_RS24655 at 5138.593 kb on - strand, within BWI76_RS24655 at 5138.593 kb on - strand, within BWI76_RS24655 at 5138.634 kb on - strand, within BWI76_RS24655 at 5138.662 kb on - strand, within BWI76_RS24655 at 5138.771 kb on + strand, within BWI76_RS24655 at 5139.264 kb on - strand, within BWI76_RS24660 at 5139.284 kb on - strand, within BWI76_RS24660 at 5139.517 kb on + strand, within BWI76_RS24660 at 5139.583 kb on - strand, within BWI76_RS24660 at 5140.343 kb on + strand, within BWI76_RS24660 at 5140.415 kb on - strand at 5140.494 kb on + strand at 5140.502 kb on + strand at 5140.506 kb on + strand at 5140.591 kb on - strand at 5140.846 kb on + strand, within BWI76_RS24665 at 5140.846 kb on - strand, within BWI76_RS24665 at 5141.088 kb on + strand, within BWI76_RS24665 at 5141.126 kb on + strand, within BWI76_RS24665 at 5141.143 kb on + strand, within BWI76_RS24665 at 5141.438 kb on + strand, within BWI76_RS24665
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with 2,2'-Dipyridyl 200 uM remove 5,138,211 - BWI76_RS24655 0.21 +0.3 5,138,512 - BWI76_RS24655 0.50 -0.2 5,138,512 - BWI76_RS24655 0.50 -0.1 5,138,593 - BWI76_RS24655 0.58 -0.1 5,138,593 - BWI76_RS24655 0.58 -0.2 5,138,634 - BWI76_RS24655 0.62 -0.7 5,138,662 - BWI76_RS24655 0.64 -0.1 5,138,771 + BWI76_RS24655 0.75 +0.3 5,139,264 - BWI76_RS24660 0.16 +0.5 5,139,284 - BWI76_RS24660 0.17 +0.2 5,139,517 + BWI76_RS24660 0.33 +0.6 5,139,583 - BWI76_RS24660 0.37 +0.2 5,140,343 + BWI76_RS24660 0.89 +0.7 5,140,415 - -0.3 5,140,494 + -0.4 5,140,502 + +0.2 5,140,506 + -0.8 5,140,591 - -0.3 5,140,846 + BWI76_RS24665 0.12 -0.5 5,140,846 - BWI76_RS24665 0.12 -0.1 5,141,088 + BWI76_RS24665 0.37 +0.0 5,141,126 + BWI76_RS24665 0.40 +0.1 5,141,143 + BWI76_RS24665 0.42 -0.3 5,141,438 + BWI76_RS24665 0.73 +0.3
Or see this region's nucleotide sequence