Experiment: RCH2_defined_glucose with 2,2'-Dipyridyl 200 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16995 and BWI76_RS17000 are separated by 2 nucleotides BWI76_RS17000 and BWI76_RS17005 are separated by 442 nucleotides BWI76_RS17005 and BWI76_RS17010 are separated by 11 nucleotides BWI76_RS17010 and BWI76_RS17015 are separated by 2 nucleotides
BWI76_RS16995: BWI76_RS16995 - Fe-S cluster assembly protein SufB, at 3,524,329 to 3,525,816
_RS16995
BWI76_RS17000: BWI76_RS17000 - Fe-S cluster assembly scaffold SufA, at 3,525,819 to 3,526,196
_RS17000
BWI76_RS17005: BWI76_RS17005 - hypothetical protein, at 3,526,639 to 3,527,151
_RS17005
BWI76_RS17010: BWI76_RS17010 - fimbrial protein, at 3,527,163 to 3,528,110
_RS17010
BWI76_RS17015: BWI76_RS17015 - fimbrial assembly protein, at 3,528,113 to 3,530,656
_RS17015
Position (kb)
3526
3527
3528 Strain fitness (log2 ratio)
-1
0
1 at 3525.897 kb on + strand, within BWI76_RS17000 at 3525.998 kb on - strand, within BWI76_RS17000 at 3526.143 kb on - strand, within BWI76_RS17000 at 3526.205 kb on + strand at 3526.459 kb on + strand at 3526.630 kb on - strand at 3526.671 kb on + strand at 3526.854 kb on + strand, within BWI76_RS17005 at 3526.958 kb on + strand, within BWI76_RS17005 at 3526.965 kb on + strand, within BWI76_RS17005 at 3527.044 kb on + strand, within BWI76_RS17005 at 3527.050 kb on + strand, within BWI76_RS17005 at 3527.188 kb on + strand at 3527.203 kb on + strand at 3527.255 kb on + strand at 3527.344 kb on + strand, within BWI76_RS17010 at 3527.372 kb on - strand, within BWI76_RS17010 at 3527.391 kb on + strand, within BWI76_RS17010 at 3527.606 kb on + strand, within BWI76_RS17010 at 3527.614 kb on - strand, within BWI76_RS17010 at 3527.702 kb on - strand, within BWI76_RS17010 at 3527.712 kb on - strand, within BWI76_RS17010 at 3527.748 kb on - strand, within BWI76_RS17010 at 3527.870 kb on + strand, within BWI76_RS17010 at 3527.905 kb on - strand, within BWI76_RS17010 at 3527.987 kb on + strand, within BWI76_RS17010 at 3527.990 kb on + strand, within BWI76_RS17010 at 3527.995 kb on - strand, within BWI76_RS17010 at 3528.001 kb on + strand, within BWI76_RS17010 at 3528.001 kb on + strand, within BWI76_RS17010 at 3528.050 kb on - strand at 3528.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with 2,2'-Dipyridyl 200 uM remove 3,525,897 + BWI76_RS17000 0.21 -0.3 3,525,998 - BWI76_RS17000 0.47 +0.6 3,526,143 - BWI76_RS17000 0.86 -0.7 3,526,205 + -0.6 3,526,459 + +0.5 3,526,630 - +0.0 3,526,671 + -0.5 3,526,854 + BWI76_RS17005 0.42 +0.4 3,526,958 + BWI76_RS17005 0.62 +0.2 3,526,965 + BWI76_RS17005 0.64 +0.2 3,527,044 + BWI76_RS17005 0.79 -0.0 3,527,050 + BWI76_RS17005 0.80 +0.6 3,527,188 + -0.3 3,527,203 + -0.3 3,527,255 + +0.0 3,527,344 + BWI76_RS17010 0.19 -1.0 3,527,372 - BWI76_RS17010 0.22 -0.3 3,527,391 + BWI76_RS17010 0.24 -0.8 3,527,606 + BWI76_RS17010 0.47 -0.6 3,527,614 - BWI76_RS17010 0.48 +0.1 3,527,702 - BWI76_RS17010 0.57 -1.0 3,527,712 - BWI76_RS17010 0.58 +0.4 3,527,748 - BWI76_RS17010 0.62 +0.2 3,527,870 + BWI76_RS17010 0.75 +0.1 3,527,905 - BWI76_RS17010 0.78 -0.5 3,527,987 + BWI76_RS17010 0.87 +0.1 3,527,990 + BWI76_RS17010 0.87 +0.5 3,527,995 - BWI76_RS17010 0.88 -0.6 3,528,001 + BWI76_RS17010 0.88 -0.0 3,528,001 + BWI76_RS17010 0.88 +0.3 3,528,050 - -0.7 3,528,055 + +0.1
Or see this region's nucleotide sequence