Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005122

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
1,373,484	+				+2.1
1,373,484	+				+0.6
1,373,542	+				-0.6
1,373,542	+				+0.2
1,373,542	+				+1.5
1,373,542	+				+0.7
1,373,542	+				+1.2
1,373,542	+				+0.7
1,373,543	-				+0.2
1,373,543	-				+1.7
1,373,543	-				+1.2
1,373,543	-				+1.0
1,373,543	-				+1.9
1,373,543	-				-0.3
1,373,952	+		ABIE53_005121	0.57	-1.7
1,373,952	+		ABIE53_005121	0.57	+1.7
1,373,972	+		ABIE53_005121	0.60	+1.0
1,373,973	-		ABIE53_005121	0.60	+0.1
1,373,991	+		ABIE53_005121	0.63	+1.7
1,373,991	+		ABIE53_005121	0.63	+0.1
1,373,991	+		ABIE53_005121	0.63	+1.6
1,373,991	+		ABIE53_005121	0.63	+0.1
1,373,991	+		ABIE53_005121	0.63	+1.7
1,373,991	+		ABIE53_005121	0.63	+0.9
1,373,991	+		ABIE53_005121	0.63	+0.6
1,373,991	+		ABIE53_005121	0.63	+0.1
1,373,991	+		ABIE53_005121	0.63	+2.9
1,373,991	+		ABIE53_005121	0.63	+0.9
1,373,991	+		ABIE53_005121	0.63	+0.0
1,373,992	-		ABIE53_005121	0.63	+0.7
1,373,992	-		ABIE53_005121	0.63	+0.7
1,373,992	-		ABIE53_005121	0.63	-0.5
1,373,992	-		ABIE53_005121	0.63	-0.8
1,373,992	-		ABIE53_005121	0.63	+0.7
1,373,992	-		ABIE53_005121	0.63	+0.7
1,373,992	-		ABIE53_005121	0.63	-0.6
1,373,992	-		ABIE53_005121	0.63	-0.5
1,373,992	-		ABIE53_005121	0.63	+2.3
1,373,996	+		ABIE53_005121	0.64	-0.6
1,373,996	+		ABIE53_005121	0.64	-0.6
1,373,996	+		ABIE53_005121	0.64	-0.4
1,373,996	+		ABIE53_005121	0.64	-0.0
1,373,996	+		ABIE53_005121	0.64	+2.3
1,373,997	-		ABIE53_005121	0.64	+0.6
1,373,997	-		ABIE53_005121	0.64	+3.3
1,373,997	-		ABIE53_005121	0.64	-1.2
1,373,997	-		ABIE53_005121	0.64	-0.2
1,374,003	-		ABIE53_005121	0.65	-1.6
1,374,011	+		ABIE53_005121	0.66	+1.1
1,374,012	-		ABIE53_005121	0.66	-2.1
1,374,012	-		ABIE53_005121	0.66	+1.9
1,374,012	-		ABIE53_005121	0.66	-1.4
1,374,012	-		ABIE53_005121	0.66	-0.7
1,374,012	-		ABIE53_005121	0.66	+0.7
1,374,172	+				+1.1
1,374,173	-				-1.5
1,374,173	-				-2.1
1,374,173	-				-1.2
1,374,186	+				+0.3
1,374,186	+				+0.4
1,374,187	-				+1.0
1,374,187	-				+0.1
1,374,187	-				+0.2
1,374,352	+				+0.1
1,374,452	+				-3.9
1,374,453	-				-0.5
1,374,453	-				-1.4
1,374,453	-				+0.7
1,374,523	+				-0.0
1,374,523	+				-0.3
1,374,523	+				-1.2
1,374,523	+				+0.1
1,374,532	-				+0.3
1,374,565	+				-0.3
1,374,566	-				-1.7
1,374,735	+		ABIE53_005122	0.22	-0.7
1,374,735	+		ABIE53_005122	0.22	+1.0
1,374,735	+		ABIE53_005122	0.22	-1.8
1,374,735	+		ABIE53_005122	0.22	-1.0
1,374,736	-		ABIE53_005122	0.22	-1.1
1,374,736	-		ABIE53_005122	0.22	-0.3
1,374,736	-		ABIE53_005122	0.22	+0.8
1,374,874	+		ABIE53_005122	0.31	-1.5
1,374,874	+		ABIE53_005122	0.31	+0.1
1,374,875	-		ABIE53_005122	0.32	+0.7
1,374,943	+		ABIE53_005122	0.36	-1.5
1,374,943	+		ABIE53_005122	0.36	-1.3
1,374,943	+		ABIE53_005122	0.36	+0.2
1,374,944	-		ABIE53_005122	0.36	-2.8
1,374,944	-		ABIE53_005122	0.36	-0.6
1,374,944	-		ABIE53_005122	0.36	-0.6
1,374,944	-		ABIE53_005122	0.36	-0.8
1,375,000	+		ABIE53_005122	0.40	-1.1
1,375,000	+		ABIE53_005122	0.40	-1.1
1,375,031	-		ABIE53_005122	0.43	-0.9
1,375,031	-		ABIE53_005122	0.43	+0.1
1,375,085	-		ABIE53_005122	0.46	+0.7
1,375,085	-		ABIE53_005122	0.46	+0.7
1,375,087	-		ABIE53_005122	0.47	-0.6
1,375,117	+		ABIE53_005122	0.49	-0.6
1,375,117	+		ABIE53_005122	0.49	+0.7
1,375,117	+		ABIE53_005122	0.49	-2.4
1,375,117	+		ABIE53_005122	0.49	-1.9
1,375,117	+		ABIE53_005122	0.49	-0.9
1,375,117	+		ABIE53_005122	0.49	-4.2
1,375,117	+		ABIE53_005122	0.49	-0.5
1,375,117	+		ABIE53_005122	0.49	-1.5
1,375,117	+		ABIE53_005122	0.49	-1.2
1,375,117	+		ABIE53_005122	0.49	-1.1
1,375,118	-		ABIE53_005122	0.49	+0.2
1,375,118	-		ABIE53_005122	0.49	-2.8
1,375,118	-		ABIE53_005122	0.49	-3.0
1,375,118	-		ABIE53_005122	0.49	-3.6
1,375,118	-		ABIE53_005122	0.49	-1.4
1,375,411	+		ABIE53_005122	0.70	-2.6
1,375,411	+		ABIE53_005122	0.70	-1.9
1,375,411	+		ABIE53_005122	0.70	-2.0
1,375,411	+		ABIE53_005122	0.70	-0.6
1,375,411	+		ABIE53_005122	0.70	-0.6
1,375,412	-		ABIE53_005122	0.70	-2.1
1,375,412	-		ABIE53_005122	0.70	-1.3
1,375,412	-		ABIE53_005122	0.70	+1.1
1,375,432	+		ABIE53_005122	0.71	+0.1
1,375,433	-		ABIE53_005122	0.71	-2.6
1,375,474	+		ABIE53_005122	0.74	+0.1
1,375,474	+		ABIE53_005122	0.74	-1.3
1,375,474	+		ABIE53_005122	0.74	+0.2
1,375,474	+		ABIE53_005122	0.74	+0.2
1,375,474	+		ABIE53_005122	0.74	-2.0
1,375,474	+		ABIE53_005122	0.74	-2.6
1,375,475	-		ABIE53_005122	0.74	-1.8
1,375,475	-		ABIE53_005122	0.74	-1.8
1,375,475	-		ABIE53_005122	0.74	-0.1
1,375,475	-		ABIE53_005122	0.74	-0.8
1,375,527	+		ABIE53_005122	0.78	-3.1
1,375,527	+		ABIE53_005122	0.78	-2.8
1,375,527	+		ABIE53_005122	0.78	+0.7
1,375,527	+		ABIE53_005122	0.78	-0.4
1,375,527	+		ABIE53_005122	0.78	-1.3
1,375,527	+		ABIE53_005122	0.78	-2.2
1,375,528	-		ABIE53_005122	0.78	+0.1
1,375,528	-		ABIE53_005122	0.78	-0.9
1,375,528	-		ABIE53_005122	0.78	-1.1
1,375,528	-		ABIE53_005122	0.78	-0.2
1,375,528	-		ABIE53_005122	0.78	-1.1
1,375,528	-		ABIE53_005122	0.78	-3.5
1,375,528	-		ABIE53_005122	0.78	+0.7
1,375,528	-		ABIE53_005122	0.78	-1.3
1,375,567	+		ABIE53_005122	0.81	-0.3
1,375,609	+		ABIE53_005122	0.84	-0.9
1,375,610	-		ABIE53_005122	0.84	+0.7
1,375,610	-		ABIE53_005122	0.84	-0.7
1,375,610	-		ABIE53_005122	0.84	-0.5
1,375,610	-		ABIE53_005122	0.84	-1.8
1,375,633	+		ABIE53_005122	0.85	-1.3
1,375,633	+		ABIE53_005122	0.85	-0.0
1,375,633	+		ABIE53_005122	0.85	+0.3
1,375,633	+		ABIE53_005122	0.85	+0.7
1,375,633	+		ABIE53_005122	0.85	-0.3
1,375,633	+		ABIE53_005122	0.85	+0.7
1,375,634	-		ABIE53_005122	0.85	-0.1
1,375,634	-		ABIE53_005122	0.85	+0.1
1,375,634	-		ABIE53_005122	0.85	-2.3
1,375,714	+				-1.5
1,375,714	+				-0.8
1,375,714	+				+1.7
1,375,715	-				+0.1
1,375,715	-				-1.1
1,375,715	-				-2.2
1,375,715	-				+0.8
1,375,726	+				-3.4
1,375,726	+				-0.9
1,375,726	+				+0.5
1,375,726	+				+1.2
1,375,727	-				-1.4
1,375,788	+				-1.8
1,375,788	+				-1.5
1,375,789	-				-2.1
1,375,789	-				+0.7
1,375,789	-				-0.5
1,375,789	-				-1.2
1,375,789	-				-2.1
1,375,789	-				-1.8
1,375,816	-				-0.2
1,375,816	-				-1.1
1,375,909	+				+0.0
1,375,909	+				-1.9
1,375,910	-				-0.6
1,375,910	-				+2.0
1,375,954	-				+0.1
1,375,980	+				+0.7
1,376,008	+				-1.0
1,376,009	-				+0.4
1,376,025	+				+0.1
1,376,025	+				-0.8
1,376,026	-				-2.2
1,376,070	+				-0.6
1,376,070	+				+0.3
1,376,070	+				+0.3
1,376,070	+				+3.5
1,376,071	-				+0.4
1,376,136	+				+0.6
1,376,136	+				+1.0
1,376,136	+				-0.3
1,376,136	+				-2.8
1,376,136	+				-2.6
1,376,136	+				+1.3
1,376,136	+				-0.4
1,376,136	+				-0.8
1,376,136	+				-1.9
1,376,136	+				-2.1
1,376,136	+				-0.1
1,376,137	-				-0.3
1,376,137	-				-0.5
1,376,137	-				+0.2
1,376,137	-				-0.9
1,376,137	-				+0.3
1,376,137	-				+1.2
1,376,137	-				-1.1
1,376,137	-				-1.1
1,376,274	+		ABIE53_005123	0.40	-0.6
1,376,274	+		ABIE53_005123	0.40	-0.5
1,376,274	+		ABIE53_005123	0.40	-0.6
1,376,274	+		ABIE53_005123	0.40	+0.5
1,376,275	-		ABIE53_005123	0.41	-1.6
1,376,275	-		ABIE53_005123	0.41	+0.3
1,376,275	-		ABIE53_005123	0.41	+0.3
1,376,301	+		ABIE53_005123	0.49	-0.2
1,376,455	-				+0.6
1,376,466	+				+1.0
1,376,466	+				-0.1
1,376,466	+				+0.4
1,376,466	+				+0.8
1,376,466	+				-0.5
1,376,466	+				-1.5
1,376,466	+				+1.7
1,376,466	+				+0.4
1,376,466	+				+0.9
1,376,467	-				-1.1
1,376,467	-				-0.4
1,376,467	-				+0.7
1,376,467	-				-0.4
1,376,467	-				+0.7
1,376,467	-				-1.1
1,376,467	-				-0.1
1,376,467	-				+0.6
1,376,467	-				+1.5
1,376,499	+				-0.8
1,376,499	+				-0.3
1,376,499	+				-0.4
1,376,499	+				-0.3
1,376,500	-				+4.3
1,376,500	-				+0.5
1,376,500	-				-1.1
1,376,509	+				+1.9
1,376,509	+				+0.8
1,376,510	-				+2.4
1,376,510	-				-0.5
1,376,510	-				+0.9