Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004837

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
1,053,612	+				+0.4
1,053,612	+				+0.0
1,053,612	+				-1.4
1,053,612	+				-0.7
1,053,613	-				+1.9
1,053,613	-				-0.4
1,053,613	-				-1.7
1,053,613	-				-0.4
1,053,613	-				+0.5
1,053,613	-				+0.6
1,053,614	+				+2.0
1,053,614	+				-0.6
1,053,614	+				+0.0
1,053,614	+				+1.0
1,053,614	+				-0.1
1,053,614	+				+0.1
1,053,614	+				-1.8
1,053,614	+				-0.2
1,053,615	-				-1.2
1,053,615	-				-0.1
1,053,615	-				-1.4
1,053,615	-				+0.8
1,053,615	-				+2.6
1,053,615	-				-1.0
1,053,615	-				-0.0
1,053,836	+		ABIE53_004836	0.20	+1.6
1,053,836	+		ABIE53_004836	0.20	-1.0
1,053,836	+		ABIE53_004836	0.20	-1.5
1,053,836	+		ABIE53_004836	0.20	-0.7
1,053,836	+		ABIE53_004836	0.20	-1.0
1,053,836	+		ABIE53_004836	0.20	-1.4
1,053,836	+		ABIE53_004836	0.20	-0.1
1,053,836	+		ABIE53_004836	0.20	-0.8
1,053,836	+		ABIE53_004836	0.20	+0.4
1,053,837	-		ABIE53_004836	0.20	+2.0
1,053,837	-		ABIE53_004836	0.20	-0.1
1,053,837	-		ABIE53_004836	0.20	-3.2
1,053,837	-		ABIE53_004836	0.20	+1.2
1,053,837	-		ABIE53_004836	0.20	-1.4
1,053,837	-		ABIE53_004836	0.20	-1.2
1,053,837	-		ABIE53_004836	0.20	-1.1
1,053,837	-		ABIE53_004836	0.20	-1.2
1,054,092	+		ABIE53_004836	0.51	-0.4
1,054,092	+		ABIE53_004836	0.51	+0.0
1,054,092	+		ABIE53_004836	0.51	-1.0
1,054,092	+		ABIE53_004836	0.51	+1.0
1,054,092	+		ABIE53_004836	0.51	-0.7
1,054,092	+		ABIE53_004836	0.51	-2.0
1,054,092	+		ABIE53_004836	0.51	-1.8
1,054,092	+		ABIE53_004836	0.51	+0.0
1,054,092	+		ABIE53_004836	0.51	-0.1
1,054,092	+		ABIE53_004836	0.51	-0.4
1,054,092	+		ABIE53_004836	0.51	+3.0
1,054,092	+		ABIE53_004836	0.51	+2.2
1,054,092	+		ABIE53_004836	0.51	+3.8
1,054,092	+		ABIE53_004836	0.51	+0.4
1,054,092	+		ABIE53_004836	0.51	+0.4
1,054,092	+		ABIE53_004836	0.51	+1.7
1,054,092	+		ABIE53_004836	0.51	+1.0
1,054,092	+		ABIE53_004836	0.51	+0.6
1,054,092	+		ABIE53_004836	0.51	+0.3
1,054,093	-		ABIE53_004836	0.51	+0.9
1,054,093	-		ABIE53_004836	0.51	-1.0
1,054,093	-		ABIE53_004836	0.51	+0.2
1,054,093	-		ABIE53_004836	0.51	-1.4
1,054,093	-		ABIE53_004836	0.51	+2.4
1,054,093	-		ABIE53_004836	0.51	-2.0
1,054,093	-		ABIE53_004836	0.51	-1.2
1,054,093	-		ABIE53_004836	0.51	-0.7
1,054,094	+		ABIE53_004836	0.51	+1.3
1,054,095	-		ABIE53_004836	0.51	-0.2
1,054,095	-		ABIE53_004836	0.51	-0.2
1,054,095	-		ABIE53_004836	0.51	+0.1
1,054,095	-		ABIE53_004836	0.51	+1.8
1,054,165	+		ABIE53_004836	0.59	-1.0
1,054,165	+		ABIE53_004836	0.59	+0.5
1,054,166	-		ABIE53_004836	0.59	+0.3
1,054,166	-		ABIE53_004836	0.59	-1.1
1,054,166	-		ABIE53_004836	0.59	-0.7
1,054,485	+				+0.4
1,054,495	-				+1.3
1,054,618	+				-0.7
1,054,619	-				-1.9
1,054,619	-				+0.0
1,054,753	-		ABIE53_004837	0.22	-3.0
1,054,753	-		ABIE53_004837	0.22	-1.2
1,054,934	-		ABIE53_004837	0.48	-0.4
1,055,035	+		ABIE53_004837	0.62	+1.6
1,055,035	+		ABIE53_004837	0.62	-1.7
1,055,035	+		ABIE53_004837	0.62	-0.9
1,055,035	+		ABIE53_004837	0.62	-0.9
1,055,036	-		ABIE53_004837	0.62	-0.1
1,055,036	-		ABIE53_004837	0.62	-2.2
1,055,050	+		ABIE53_004837	0.64	+1.6
1,055,050	+		ABIE53_004837	0.64	+0.9
1,055,050	+		ABIE53_004837	0.64	-2.0
1,055,050	+		ABIE53_004837	0.64	-0.5
1,055,050	+		ABIE53_004837	0.64	+0.5
1,055,050	+		ABIE53_004837	0.64	-1.5
1,055,050	+		ABIE53_004837	0.64	-1.7
1,055,051	-		ABIE53_004837	0.64	-0.6
1,055,051	-		ABIE53_004837	0.64	-0.7
1,055,051	-		ABIE53_004837	0.64	+1.6
1,055,051	-		ABIE53_004837	0.64	-0.4
1,055,293	-				-0.1
1,055,300	+				-0.7
1,055,300	+				-1.0
1,055,300	+				-0.1
1,055,300	+				-1.0
1,055,300	+				-0.5
1,055,301	-				-1.4
1,055,301	-				-0.1
1,055,301	-				+0.8
1,055,301	-				+2.6
1,055,432	+		ABIE53_004838	0.19	-3.2
1,055,433	-		ABIE53_004838	0.19	-2.0
1,055,433	-		ABIE53_004838	0.19	-2.8
1,055,792	+		ABIE53_004838	0.73	-0.7
1,055,792	+		ABIE53_004838	0.73	-1.7
1,055,792	+		ABIE53_004838	0.73	-0.4
1,055,792	+		ABIE53_004838	0.73	-1.0
1,055,793	-		ABIE53_004838	0.73	-0.7
1,055,793	-		ABIE53_004838	0.73	-0.7
1,055,793	-		ABIE53_004838	0.73	-1.3
1,055,793	-		ABIE53_004838	0.73	-2.3
1,055,796	-		ABIE53_004838	0.73	-1.4
1,055,998	+				-1.7
1,055,998	+				+1.4
1,055,999	-				-1.1
1,055,999	-				-0.2
1,056,046	-				+0.6
1,056,046	-				-0.7
1,056,046	-				-0.3
1,056,144	+		ABIE53_004839	0.16	+0.6
1,056,145	-		ABIE53_004839	0.16	-0.9
1,056,145	-		ABIE53_004839	0.16	-1.5
1,056,145	-		ABIE53_004839	0.16	-1.4
1,056,145	-		ABIE53_004839	0.16	-1.2
1,056,148	+		ABIE53_004839	0.16	-1.5
1,056,148	+		ABIE53_004839	0.16	+0.8
1,056,148	+		ABIE53_004839	0.16	-2.1
1,056,148	+		ABIE53_004839	0.16	+1.1
1,056,148	+		ABIE53_004839	0.16	-0.1
1,056,148	+		ABIE53_004839	0.16	-0.4
1,056,149	-		ABIE53_004839	0.16	+1.6
1,056,149	-		ABIE53_004839	0.16	+0.0
1,056,149	-		ABIE53_004839	0.16	-0.7
1,056,149	-		ABIE53_004839	0.16	+1.6
1,056,149	-		ABIE53_004839	0.16	-2.8
1,056,149	-		ABIE53_004839	0.16	-0.4
1,056,149	-		ABIE53_004839	0.16	-1.2
1,056,149	-		ABIE53_004839	0.16	+0.9
1,056,149	-		ABIE53_004839	0.16	+0.9
1,056,149	-		ABIE53_004839	0.16	+0.4
1,056,185	+		ABIE53_004839	0.21	+0.6
1,056,185	+		ABIE53_004839	0.21	-1.7
1,056,186	-		ABIE53_004839	0.21	-0.6
1,056,186	-		ABIE53_004839	0.21	-0.7
1,056,255	+		ABIE53_004839	0.30	-0.5
1,056,255	+		ABIE53_004839	0.30	-0.7
1,056,255	+		ABIE53_004839	0.30	-2.8
1,056,255	+		ABIE53_004839	0.30	+1.0
1,056,255	+		ABIE53_004839	0.30	+0.2
1,056,255	+		ABIE53_004839	0.30	-1.7
1,056,255	+		ABIE53_004839	0.30	+0.4
1,056,255	+		ABIE53_004839	0.30	+2.6
1,056,255	+		ABIE53_004839	0.30	-2.8
1,056,255	+		ABIE53_004839	0.30	+2.6
1,056,256	-		ABIE53_004839	0.30	-0.6
1,056,256	-		ABIE53_004839	0.30	+0.5
1,056,256	-		ABIE53_004839	0.30	-1.4
1,056,256	-		ABIE53_004839	0.30	-1.5