Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002989

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
3,379,664	+		ABIE53_002988	0.60	-1.5
3,379,711	-		ABIE53_002988	0.62	+0.7
3,379,797	+		ABIE53_002988	0.66	-1.4
3,379,797	+		ABIE53_002988	0.66	-2.7
3,379,797	+		ABIE53_002988	0.66	-0.3
3,379,797	+		ABIE53_002988	0.66	-2.1
3,379,798	-		ABIE53_002988	0.66	-1.2
3,379,798	-		ABIE53_002988	0.66	-0.8
3,379,821	+		ABIE53_002988	0.67	+1.7
3,379,821	+		ABIE53_002988	0.67	-1.2
3,379,821	+		ABIE53_002988	0.67	+0.1
3,379,821	+		ABIE53_002988	0.67	-0.5
3,379,821	+		ABIE53_002988	0.67	-0.3
3,379,821	+		ABIE53_002988	0.67	-0.8
3,379,821	+		ABIE53_002988	0.67	-2.1
3,379,821	+		ABIE53_002988	0.67	-0.6
3,379,821	+		ABIE53_002988	0.67	+0.2
3,379,822	-		ABIE53_002988	0.67	-1.4
3,379,903	+		ABIE53_002988	0.71	+1.0
3,379,903	+		ABIE53_002988	0.71	-0.3
3,379,904	-		ABIE53_002988	0.71	+0.2
3,379,904	-		ABIE53_002988	0.71	-0.3
3,379,904	-		ABIE53_002988	0.71	-0.7
3,379,904	-		ABIE53_002988	0.71	+1.3
3,379,904	-		ABIE53_002988	0.71	-0.3
3,380,091	+		ABIE53_002988	0.80	-0.6
3,380,091	+		ABIE53_002988	0.80	-1.4
3,380,091	+		ABIE53_002988	0.80	-0.1
3,380,091	+		ABIE53_002988	0.80	-3.3
3,380,092	-		ABIE53_002988	0.80	-0.3
3,380,092	-		ABIE53_002988	0.80	+0.2
3,380,092	-		ABIE53_002988	0.80	+0.9
3,380,092	-		ABIE53_002988	0.80	-1.8
3,380,140	+		ABIE53_002988	0.83	-1.4
3,380,140	+		ABIE53_002988	0.83	+0.3
3,380,141	-		ABIE53_002988	0.83	+0.0
3,380,141	-		ABIE53_002988	0.83	-1.1
3,380,141	-		ABIE53_002988	0.83	-0.3
3,380,141	-		ABIE53_002988	0.83	+0.2
3,380,141	-		ABIE53_002988	0.83	-2.4
3,380,229	+		ABIE53_002988	0.87	-1.8
3,380,229	+		ABIE53_002988	0.87	+1.6
3,380,229	+		ABIE53_002988	0.87	-0.6
3,380,229	+		ABIE53_002988	0.87	-1.6
3,380,229	+		ABIE53_002988	0.87	-1.3
3,380,230	-		ABIE53_002988	0.87	-0.0
3,380,230	-		ABIE53_002988	0.87	+0.2
3,380,230	-		ABIE53_002988	0.87	-0.1
3,380,230	-		ABIE53_002988	0.87	-2.1
3,380,230	-		ABIE53_002988	0.87	+1.7
3,380,230	-		ABIE53_002988	0.87	-0.8
3,380,230	-		ABIE53_002988	0.87	+0.1
3,380,233	-		ABIE53_002988	0.87	+0.7
3,380,233	-		ABIE53_002988	0.87	-0.6
3,380,233	-		ABIE53_002988	0.87	+0.6
3,380,233	-		ABIE53_002988	0.87	+2.7
3,380,233	-		ABIE53_002988	0.87	-0.5
3,380,262	+		ABIE53_002988	0.89	-0.4
3,380,262	+		ABIE53_002988	0.89	-0.8
3,380,262	+		ABIE53_002988	0.89	-1.1
3,380,262	+		ABIE53_002988	0.89	-0.1
3,380,262	+		ABIE53_002988	0.89	+0.3
3,380,262	+		ABIE53_002988	0.89	+0.2
3,380,262	+		ABIE53_002988	0.89	+0.5
3,380,263	-		ABIE53_002988	0.89	+0.5
3,380,263	-		ABIE53_002988	0.89	-0.5
3,380,263	-		ABIE53_002988	0.89	+0.7
3,380,263	-		ABIE53_002988	0.89	-1.0
3,380,263	-		ABIE53_002988	0.89	-0.4
3,380,263	-		ABIE53_002988	0.89	+0.4
3,380,330	+				+0.6
3,380,424	+				-0.3
3,380,532	+				+1.3
3,380,595	+				+0.2
3,380,595	+				-0.2
3,380,595	+				-0.8
3,380,596	-				+0.7
3,380,628	+				-1.1
3,380,629	-				+0.7
3,380,647	+				+0.2
3,380,647	+				+1.7
3,380,653	+				+0.7
3,380,654	-				-0.5
3,380,654	-				-2.1
3,380,902	+		ABIE53_002989	0.23	+1.3
3,380,902	+		ABIE53_002989	0.23	-2.3
3,380,902	+		ABIE53_002989	0.23	-0.4
3,380,902	+		ABIE53_002989	0.23	+0.0
3,380,904	+		ABIE53_002989	0.24	+0.4
3,380,905	-		ABIE53_002989	0.24	+1.4
3,380,905	-		ABIE53_002989	0.24	+0.7
3,381,133	+		ABIE53_002989	0.41	-1.1
3,381,133	+		ABIE53_002989	0.41	-0.1
3,381,134	-		ABIE53_002989	0.41	-0.3
3,381,667	+		ABIE53_002989	0.82	+0.7
3,381,668	-		ABIE53_002989	0.82	-0.6
3,381,679	-		ABIE53_002989	0.83	+0.2
3,381,679	-		ABIE53_002989	0.83	+0.3
3,381,679	-		ABIE53_002989	0.83	+3.7
3,381,681	+		ABIE53_002989	0.83	-1.6
3,381,681	+		ABIE53_002989	0.83	+3.1
3,381,682	-		ABIE53_002989	0.83	-0.5
3,381,682	-		ABIE53_002989	0.83	+0.2
3,381,682	-		ABIE53_002989	0.83	-0.8
3,381,761	-		ABIE53_002989	0.89	+0.2
3,381,761	-		ABIE53_002989	0.89	+0.6
3,381,833	+				+0.3
3,381,833	+				-0.3
3,381,834	-				+1.6
3,381,834	-				+1.5
3,382,028	+				+0.2
3,382,028	+				-1.6
3,382,028	+				+0.2
3,382,028	+				-1.8
3,382,028	+				+3.0
3,382,029	-				+0.7
3,382,029	-				+0.6
3,382,029	-				-0.2
3,382,073	+		ABIE53_002990	0.14	+0.7
3,382,073	+		ABIE53_002990	0.14	-0.8
3,382,073	+		ABIE53_002990	0.14	-1.8
3,382,073	+		ABIE53_002990	0.14	-0.5
3,382,074	-		ABIE53_002990	0.14	-1.2
3,382,074	-		ABIE53_002990	0.14	-0.3
3,382,074	-		ABIE53_002990	0.14	-1.6
3,382,088	+		ABIE53_002990	0.16	-0.6
3,382,089	-		ABIE53_002990	0.16	+0.5
3,382,269	+		ABIE53_002990	0.41	-0.9
3,382,375	+		ABIE53_002990	0.57	-0.6
3,382,375	+		ABIE53_002990	0.57	+0.4
3,382,376	-		ABIE53_002990	0.57	-1.3
3,382,545	+		ABIE53_002990	0.81	-2.0
3,382,545	+		ABIE53_002990	0.81	-0.2
3,382,546	-		ABIE53_002990	0.81	-1.1
3,382,582	+		ABIE53_002990	0.86	-0.3
3,382,583	-		ABIE53_002990	0.86	+0.4
3,382,583	-		ABIE53_002990	0.86	+1.0
3,382,696	+				+0.7
3,382,697	-				-0.1
3,382,697	-				-0.3
3,382,697	-				-0.3
3,382,707	+				+0.7
3,382,708	-				+0.8
3,382,708	-				-0.4
3,382,773	+				-0.7
3,382,773	+				-2.2
3,382,773	+				+2.5
3,382,773	+				+0.8
3,382,773	+				-0.8
3,382,774	-				-0.3
3,382,774	-				-0.6
3,382,774	-				+0.7
3,382,777	+		ABIE53_002991	0.10	-0.5
3,382,777	+		ABIE53_002991	0.10	+0.1
3,382,781	-		ABIE53_002991	0.11	+0.4
3,382,884	+		ABIE53_002991	0.25	-0.8
3,382,884	+		ABIE53_002991	0.25	-3.6
3,382,884	+		ABIE53_002991	0.25	-1.1
3,382,885	-		ABIE53_002991	0.25	+0.8
3,382,885	-		ABIE53_002991	0.25	+0.7