Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002548

Experiment: RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Indole-3-pyruvic 1 mM
2,873,246	+		ABIE53_002547	0.52	-1.9
2,873,246	+		ABIE53_002547	0.52	-0.9
2,873,247	-		ABIE53_002547	0.52	-0.2
2,873,247	-		ABIE53_002547	0.52	-1.6
2,873,247	-		ABIE53_002547	0.52	-0.0
2,873,556	-		ABIE53_002547	0.71	-0.7
2,873,687	+		ABIE53_002547	0.79	+2.7
2,873,688	-		ABIE53_002547	0.79	+1.2
2,874,305	+		ABIE53_002548	0.24	-0.7
2,874,306	-		ABIE53_002548	0.24	+0.0
2,874,306	-		ABIE53_002548	0.24	-1.3
2,874,306	-		ABIE53_002548	0.24	-1.2
2,874,306	-		ABIE53_002548	0.24	-0.3
2,874,391	+		ABIE53_002548	0.32	-2.6
2,874,391	+		ABIE53_002548	0.32	-0.8
2,874,392	-		ABIE53_002548	0.32	-2.2
2,874,392	-		ABIE53_002548	0.32	-0.6
2,874,392	-		ABIE53_002548	0.32	-2.7
2,874,430	+		ABIE53_002548	0.35	+2.4
2,874,430	+		ABIE53_002548	0.35	-3.3
2,874,431	-		ABIE53_002548	0.35	+0.9
2,874,572	+		ABIE53_002548	0.48	+0.1
2,874,593	-		ABIE53_002548	0.50	+0.3
2,874,791	-		ABIE53_002548	0.68	-0.6
2,874,793	+		ABIE53_002548	0.68	-1.3
2,874,793	+		ABIE53_002548	0.68	-1.3
2,874,849	-		ABIE53_002548	0.73	-2.0
2,874,849	-		ABIE53_002548	0.73	-2.2
2,874,850	+		ABIE53_002548	0.73	-0.3
2,874,851	-		ABIE53_002548	0.73	-1.4
2,874,851	-		ABIE53_002548	0.73	-0.6
2,874,851	-		ABIE53_002548	0.73	-0.1
2,874,907	+		ABIE53_002548	0.78	-2.6
2,874,929	-		ABIE53_002548	0.80	+0.7
2,875,014	+		ABIE53_002548	0.88	-1.8
2,875,015	-		ABIE53_002548	0.88	-2.2
2,875,015	-		ABIE53_002548	0.88	-1.7
2,875,015	-		ABIE53_002548	0.88	-1.6
2,875,062	+				-2.0
2,875,062	+				-0.8
2,875,194	+				-0.2
2,875,194	+				-2.5
2,875,194	+				-0.6
2,875,195	-				+0.1
2,875,195	-				-0.3
2,875,245	+				+0.7
2,875,245	+				-0.9
2,875,245	+				-3.1
2,875,293	+		ABIE53_002549	0.14	-1.5
2,875,294	-		ABIE53_002549	0.14	-0.3
2,875,473	+		ABIE53_002549	0.31	-1.1
2,875,474	-		ABIE53_002549	0.31	-1.9
2,875,579	-		ABIE53_002549	0.42	-0.2
2,875,595	+		ABIE53_002549	0.43	-0.9
2,875,806	+		ABIE53_002549	0.63	-2.9
2,875,807	-		ABIE53_002549	0.63	-2.3
2,875,827	-		ABIE53_002549	0.65	+1.1
2,875,827	-		ABIE53_002549	0.65	-0.9
2,875,893	+		ABIE53_002549	0.72	-2.1
2,875,941	+		ABIE53_002549	0.76	-0.5